Wall clock time and date at job start Fri Apr 10 2020 17:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48502 * 109.47181 * 270.00402 * 3 2 1 5 5 H 1.48500 * 109.46992 * 30.00184 * 3 2 1 6 6 H 1.48498 * 109.47273 * 150.00458 * 3 2 1 7 7 C 1.38814 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99889 * 196.90109 * 7 2 1 9 9 N 1.36936 * 120.00292 * 16.89863 * 7 2 1 10 10 C 1.47157 * 120.97999 * 26.26899 * 9 7 2 11 11 C 1.53291 * 108.38659 * 129.44216 * 10 9 7 12 12 O 1.42954 * 109.26457 * 52.27371 * 11 10 9 13 13 C 1.42959 * 114.17456 * 297.50253 * 12 11 10 14 14 H 1.09003 * 109.51259 * 302.55040 * 13 12 11 15 15 C 1.52993 * 109.51551 * 182.44901 * 13 12 11 16 16 N 1.46502 * 109.47548 * 65.09891 * 15 13 12 17 17 C 1.34769 * 120.00380 * 179.97438 * 16 15 13 18 18 O 1.21593 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.47536 * 120.00275 * 180.02562 * 17 16 15 20 20 C 1.39801 * 120.97702 * 359.72110 * 19 17 16 21 21 N 1.32188 * 118.97979 * 180.29576 * 20 19 17 22 22 C 1.31930 * 121.14216 * 359.95315 * 21 20 19 23 23 N 1.31734 * 122.19594 * 0.04636 * 22 21 20 24 24 C 1.32774 * 120.87080 * 359.97438 * 23 22 21 25 25 O 1.35275 * 120.61419 * 180.02562 * 24 23 22 26 26 C 1.47147 * 120.98826 * 206.24235 * 9 7 2 27 27 H 0.96995 * 120.00003 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.67962 * 249.16567 * 10 9 7 29 29 H 1.09004 * 109.68054 * 9.67615 * 10 9 7 30 30 H 1.08995 * 109.51284 * 172.22492 * 11 10 9 31 31 H 1.09004 * 109.51406 * 292.37687 * 11 10 9 32 32 H 1.09008 * 109.47230 * 305.10047 * 15 13 12 33 33 H 1.09005 * 109.47117 * 185.10537 * 15 13 12 34 34 H 0.96999 * 119.99392 * 0.02562 * 16 15 13 35 35 H 1.08004 * 120.51296 * 0.24535 * 20 19 17 36 36 H 1.07997 * 118.90698 * 180.02562 * 22 21 20 37 37 H 0.96707 * 114.00015 * 269.97421 * 25 24 23 38 38 H 1.08995 * 109.68464 * 110.82953 * 26 9 7 39 39 H 1.09012 * 109.70840 * 350.30066 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0553 -1.2225 0.2714 9 7 1.3700 -2.3623 -0.3458 10 6 0.1978 -2.3448 -1.2352 11 6 0.4254 -3.3660 -2.3554 12 8 0.7667 -4.6293 -1.7799 13 6 1.9821 -4.6205 -1.0272 14 1 2.8019 -4.2869 -1.6634 15 6 2.2754 -6.0315 -0.5136 16 7 2.5321 -6.9210 -1.6490 17 6 2.8157 -8.2212 -1.4359 18 8 2.8581 -8.6561 -0.3012 19 6 3.0748 -9.1168 -2.5793 20 6 3.0258 -8.6398 -3.8925 21 7 3.2587 -9.4783 -4.8876 22 6 3.5353 -10.7479 -4.6594 23 7 3.5933 -11.2457 -3.4411 24 6 3.3730 -10.4781 -2.3804 25 8 3.4344 -10.9946 -1.1316 26 6 1.8341 -3.6635 0.1611 27 1 -0.4850 0.8400 0.0004 28 1 -0.6955 -2.6122 -0.6705 29 1 0.0769 -1.3498 -1.6636 30 1 -0.4855 -3.4687 -2.9451 31 1 1.2390 -3.0274 -2.9970 32 1 1.4172 -6.3991 0.0491 33 1 3.1515 -6.0074 0.1345 34 1 2.4987 -6.5739 -2.5542 35 1 2.8002 -7.6024 -4.0910 36 1 3.7200 -11.4011 -5.4994 37 1 2.5912 -11.3389 -0.8064 38 1 1.1057 -4.0637 0.8663 39 1 2.7972 -3.5425 0.6572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035407192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:02 Heat of formation + Delta-G solvation = -36.627102 kcal Electronic energy + Delta-G solvation = -24971.984374 eV Core-core repulsion = 21109.591696 eV Total energy + Delta-G solvation = -3862.392677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.71102 -39.58128 -38.51236 -37.92088 -35.05476 -34.40803 -33.81891 -32.37158 -31.45973 -30.58925 -27.67895 -26.17233 -25.12466 -24.38607 -23.24884 -21.99985 -21.11874 -19.77925 -19.60622 -18.38777 -18.03041 -16.96176 -16.83950 -16.13519 -15.90259 -15.42543 -15.11045 -14.84877 -14.61406 -14.42276 -14.23304 -14.20575 -13.83131 -13.31447 -13.15306 -12.81532 -12.56507 -12.48204 -11.68429 -11.64254 -11.18309 -11.11527 -10.92006 -10.79464 -10.48897 -10.31067 -10.10466 -10.05505 -10.02716 -9.81664 -9.73104 -9.17195 -9.14308 -8.60624 -6.82994 -5.90455 -3.34600 -0.03437 0.45570 2.58380 2.78481 2.98690 3.30530 3.34717 3.37801 3.39050 3.57162 3.85036 4.12207 4.31201 4.37660 4.45597 4.79444 4.99678 5.03877 5.26853 5.37423 5.43089 5.65345 5.70130 5.74623 5.92330 6.05757 6.17581 6.28769 6.31120 6.35106 6.40633 6.67250 7.02241 7.02606 7.28809 7.44769 7.49557 7.64737 7.75992 7.98422 8.26869 9.04946 9.67451 10.23796 11.17700 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.002701 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.969566 B =10363.573993 C =10679.974909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.391 6.391 13 C 0.064 3.936 14 H 0.060 0.940 15 C 0.131 3.869 16 N -0.713 5.713 17 C 0.564 3.436 18 O -0.520 6.520 19 C -0.257 4.257 20 C 0.199 3.801 21 N -0.528 5.528 22 C 0.338 3.662 23 N -0.545 5.545 24 C 0.418 3.582 25 O -0.454 6.454 26 C 0.122 3.878 27 H 0.256 0.744 28 H 0.029 0.971 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.401 0.599 35 H 0.177 0.823 36 H 0.207 0.793 37 H 0.415 0.585 38 H 0.031 0.969 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 -18.021 -9.168 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.310 6.310 13 C 0.004 3.996 14 H 0.078 0.922 15 C 0.008 3.992 16 N -0.364 5.364 17 C 0.349 3.651 18 O -0.397 6.397 19 C -0.266 4.266 20 C 0.033 3.967 21 N -0.243 5.243 22 C 0.052 3.948 23 N -0.269 5.269 24 C 0.230 3.770 25 O -0.262 6.262 26 C -0.005 4.005 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.236 0.764 35 H 0.194 0.806 36 H 0.223 0.777 37 H 0.277 0.723 38 H 0.048 0.952 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.524 -18.764 -9.008 21.300 hybrid contribution -0.116 1.738 0.327 1.772 sum 4.408 -17.027 -8.681 19.614 Atomic orbital electron populations 1.70033 1.05282 1.25749 1.53581 1.25059 0.95363 0.98532 1.00644 0.86227 0.79090 0.83333 0.77746 1.21345 1.21642 1.20344 1.19208 0.92669 0.84437 1.42309 0.91268 1.44072 1.33592 1.00988 1.53115 1.21451 0.89135 0.98359 0.89733 1.23336 0.99077 0.84796 0.96618 1.87779 1.41274 1.32673 1.69278 1.22821 0.87628 0.93698 0.95489 0.92226 1.21496 1.01972 0.87746 0.87990 1.45845 1.70801 1.08630 1.11142 1.17552 0.77801 0.81932 0.87840 1.90836 1.50902 1.75334 1.22619 1.22098 1.10634 0.97051 0.96848 1.23557 0.86655 1.00133 0.86381 1.68445 1.14963 1.04787 1.36143 1.25098 0.87372 0.89673 0.92701 1.68164 1.18015 1.40863 0.99901 1.19482 0.85201 0.86733 0.85590 1.84643 1.37819 1.80229 1.23540 1.21432 0.99051 0.87218 0.92847 0.93438 0.95336 0.88716 0.89959 0.94028 0.90261 0.89722 0.76382 0.80593 0.77679 0.72334 0.95156 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 11.14 55.49 0.62 -24.78 16 2 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 3 Si 0.91 20.99 29.59 -169.99 -5.03 15.97 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.79 9.65 -15.06 -0.15 -6.94 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.31 3.05 -171.83 -0.52 -14.84 16 10 C 0.14 3.17 5.45 -3.53 -0.02 3.15 16 11 C 0.04 0.71 6.98 37.31 0.26 0.97 16 12 O -0.39 -6.74 10.33 -35.23 -0.36 -7.10 16 13 C 0.06 1.02 2.81 -26.58 -0.07 0.95 16 14 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 15 C 0.13 1.79 5.34 -4.04 -0.02 1.77 16 16 N -0.71 -8.31 5.46 -61.35 -0.34 -8.65 16 17 C 0.56 7.10 7.78 -12.47 -0.10 7.01 16 18 O -0.52 -8.13 15.32 -15.86 -0.24 -8.38 16 19 C -0.26 -2.71 5.92 -104.56 -0.62 -3.33 16 20 C 0.20 1.73 10.80 -16.81 -0.18 1.55 16 21 N -0.53 -4.71 10.42 -14.29 -0.15 -4.86 16 22 C 0.34 2.71 12.27 -92.09 -1.13 1.58 16 23 N -0.54 -5.47 10.45 -14.32 -0.15 -5.62 16 24 C 0.42 4.56 7.85 -16.19 -0.13 4.43 16 25 O -0.45 -4.90 11.81 -38.66 -0.46 -5.35 16 26 C 0.12 2.41 6.02 -3.54 -0.02 2.39 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 2.39 6.14 -51.93 -0.32 2.07 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.40 3.85 6.60 -40.82 -0.27 3.58 16 35 H 0.18 1.08 6.53 -52.48 -0.34 0.74 16 36 H 0.21 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.41 2.66 9.06 45.56 0.41 3.07 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 1.22 7.96 -51.92 -0.41 0.81 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -33.57 332.24 -7.75 -41.32 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.86 Total: 3.76 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: -2.26 Total: 13.53 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.54 Total: -58.75 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -1.06 Total: -20.83 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.57 -7.75 -41.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035407192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.690 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds