Wall clock time and date at job start Fri Apr 10 2020 17:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.48015 * 2 1 4 4 C 1.53092 * 109.48669 * 120.02555 * 2 1 3 5 5 C 1.53181 * 109.15879 * 62.37200 * 4 2 1 6 6 C 1.50698 * 109.54863 * 297.02612 * 5 4 2 7 7 H 1.07996 * 120.00208 * 143.28726 * 6 5 4 8 8 C 1.37882 * 119.99842 * 323.29453 * 6 5 4 9 9 N 1.31517 * 120.00165 * 163.10373 * 8 6 5 10 10 Si 1.86800 * 119.99792 * 343.10268 * 8 6 5 11 11 H 1.48506 * 109.47112 * 95.75749 * 10 8 6 12 12 H 1.48503 * 109.46885 * 215.75336 * 10 8 6 13 13 H 1.48496 * 109.47540 * 335.75378 * 10 8 6 14 14 C 1.53006 * 109.53969 * 176.84815 * 5 4 2 15 15 C 1.50700 * 109.47100 * 185.60939 * 14 5 4 16 16 C 1.38233 * 120.01202 * 271.72821 * 15 14 5 17 17 C 1.38225 * 120.01131 * 180.25668 * 16 15 14 18 18 C 1.38260 * 120.02787 * 359.73894 * 17 16 15 19 19 C 1.38196 * 120.01163 * 359.97438 * 18 17 16 20 20 C 1.38335 * 120.00282 * 91.44810 * 15 14 5 21 21 Cl 1.73602 * 120.01184 * 0.02562 * 20 15 14 22 22 C 1.53177 * 109.03775 * 56.98732 * 5 4 2 23 23 C 1.53093 * 109.15854 * 303.01532 * 22 5 4 24 24 O 1.42901 * 109.41718 * 57.61250 * 23 22 5 25 25 H 1.09002 * 109.46871 * 288.84598 * 1 2 3 26 26 H 1.08996 * 109.47708 * 48.84616 * 1 2 3 27 27 H 1.09004 * 109.47198 * 168.84915 * 1 2 3 28 28 H 1.08996 * 109.47091 * 184.91123 * 3 2 1 29 29 H 1.08999 * 109.47018 * 304.91198 * 3 2 1 30 30 H 1.09002 * 109.46356 * 64.91213 * 3 2 1 31 31 H 1.09001 * 109.51731 * 302.47085 * 4 2 1 32 32 H 1.08993 * 109.52612 * 182.27793 * 4 2 1 33 33 H 0.96996 * 120.00169 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.46925 * 65.62042 * 14 5 4 35 35 H 1.08994 * 109.47408 * 305.61871 * 14 5 4 36 36 H 1.07999 * 119.99103 * 359.96741 * 16 15 14 37 37 H 1.07998 * 119.98313 * 179.76551 * 17 16 15 38 38 H 1.07998 * 119.99406 * 180.02562 * 18 17 16 39 39 H 1.07997 * 120.00363 * 180.02562 * 19 18 17 40 40 H 1.09003 * 109.52396 * 62.91808 * 22 5 4 41 41 H 1.09003 * 109.52266 * 183.11159 * 22 5 4 42 42 H 1.08994 * 109.48290 * 297.62235 * 23 22 5 43 43 H 1.09003 * 109.48971 * 177.59860 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0407 -0.7222 1.2496 5 6 1.5758 -2.1813 1.2122 6 6 0.0703 -2.2320 1.2541 7 1 -0.4609 -2.9796 0.6838 8 6 -0.6291 -1.3239 2.0205 9 7 -1.9148 -1.1407 1.8133 10 14 0.2497 -0.3538 3.3532 11 1 0.6537 0.9706 2.8165 12 1 -0.6626 -0.1621 4.5091 13 1 1.4566 -1.0986 3.7934 14 6 2.1470 -2.9313 2.4173 15 6 1.8041 -4.3947 2.3068 16 6 0.6135 -4.8670 2.8265 17 6 0.3015 -6.2101 2.7298 18 6 1.1774 -7.0809 2.1085 19 6 2.3653 -6.6088 1.5833 20 6 2.6783 -5.2645 1.6800 21 17 4.1708 -4.6709 1.0212 22 6 2.0765 -2.8322 -0.0808 23 6 1.5645 -2.0285 -1.2790 24 8 2.0065 -0.6743 -1.1664 25 1 -0.3633 0.3320 0.9726 26 1 -0.3634 0.6762 -0.7737 27 1 -0.3634 -1.0083 -0.1987 28 1 3.1266 1.4436 -0.0880 29 1 1.6069 1.9811 -0.8427 30 1 1.7505 1.9302 0.9308 31 1 1.6422 -0.2356 2.1398 32 1 3.1298 -0.6873 1.2709 33 1 -2.4069 -0.5021 2.3527 34 1 1.7184 -2.5261 3.3339 35 1 3.2302 -2.8125 2.4392 36 1 -0.0709 -4.1873 3.3123 37 1 -0.6271 -6.5793 3.1393 38 1 0.9329 -8.1302 2.0329 39 1 3.0492 -7.2891 1.0977 40 1 3.1665 -2.8399 -0.0864 41 1 1.7037 -3.8547 -0.1419 42 1 0.4750 -2.0551 -1.2957 43 1 1.9528 -2.4622 -2.2005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005478244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:04 Heat of formation + Delta-G solvation = 6.564881 kcal Electronic energy + Delta-G solvation = -25608.391983 eV Core-core repulsion = 22259.829008 eV Total energy + Delta-G solvation = -3348.562975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97467 -38.65685 -35.99781 -35.04804 -33.26540 -31.98713 -30.80254 -30.20342 -27.95160 -26.54938 -25.60559 -24.73999 -22.83030 -22.07055 -21.21514 -19.28682 -18.75905 -16.64796 -15.87966 -15.77777 -15.34439 -15.02029 -14.79817 -14.57299 -13.91734 -13.67366 -13.30729 -13.18361 -12.94110 -12.63305 -12.45040 -12.14510 -12.02258 -11.74631 -11.65881 -11.33253 -11.20535 -11.00297 -10.93537 -10.69598 -10.45409 -10.41662 -10.12649 -10.07578 -9.85567 -9.77660 -9.36214 -8.93583 -8.62186 -8.48201 -8.30734 -8.04696 -7.82682 -6.23085 -4.05815 1.63710 1.79321 2.59956 3.14506 3.24185 3.32627 4.13034 4.24841 4.64509 5.05713 5.20167 5.25679 5.42916 5.61809 5.71746 5.78721 5.85443 5.91860 5.96019 6.07186 6.12779 6.20491 6.26332 6.27494 6.36724 6.41889 6.47072 6.54060 6.58319 6.65867 6.67919 6.81901 6.87028 6.91089 6.97665 7.01812 7.09671 7.12218 7.23596 7.30876 7.43083 7.72111 8.00310 8.23897 8.45684 8.84443 9.42097 10.87137 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.007626 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.714071 B = 3670.853521 C = 4549.806929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.124 3.876 3 C -0.138 4.138 4 C -0.134 4.134 5 C 0.055 3.945 6 C -0.507 4.507 7 H 0.078 0.922 8 C 0.090 3.910 9 N -0.882 5.882 10 Si 0.862 3.138 11 H -0.281 1.281 12 H -0.305 1.305 13 H -0.249 1.249 14 C -0.096 4.096 15 C -0.027 4.027 16 C -0.080 4.080 17 C -0.120 4.120 18 C -0.129 4.129 19 C -0.121 4.121 20 C -0.041 4.041 21 Cl -0.080 7.080 22 C -0.131 4.131 23 C 0.067 3.933 24 O -0.388 6.388 25 H 0.067 0.933 26 H 0.014 0.986 27 H 0.124 0.876 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.837 -5.749 0.390 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.085 3.915 3 C -0.195 4.195 4 C -0.171 4.171 5 C 0.055 3.945 6 C -0.543 4.543 7 H 0.096 0.904 8 C -0.113 4.113 9 N -0.518 5.518 10 Si 0.695 3.305 11 H -0.210 1.210 12 H -0.234 1.234 13 H -0.175 1.175 14 C -0.134 4.134 15 C -0.028 4.028 16 C -0.098 4.098 17 C -0.138 4.138 18 C -0.148 4.148 19 C -0.140 4.140 20 C -0.067 4.067 21 Cl -0.051 7.051 22 C -0.169 4.169 23 C -0.010 4.010 24 O -0.308 6.308 25 H 0.086 0.914 26 H 0.033 0.967 27 H 0.142 0.858 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.153 0.847 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.904 -5.514 0.237 8.838 hybrid contribution 0.312 0.577 0.924 1.133 sum 7.216 -4.936 1.161 8.820 Atomic orbital electron populations 1.23315 0.93255 1.05766 1.00664 1.21272 0.95137 0.90336 0.84783 1.21812 1.00758 0.95459 1.01502 1.22440 0.98774 0.98627 0.97272 1.18445 0.96422 0.89524 0.90156 1.20614 0.87986 1.16618 1.29125 0.90358 1.24821 0.94642 0.95407 0.96395 1.69988 1.08103 1.34941 1.38773 0.87655 0.79727 0.80944 0.82128 1.20966 1.23448 1.17537 1.21452 0.99329 0.90283 1.02288 1.19758 0.92824 0.95886 0.94346 1.21130 0.95361 0.94795 0.98500 1.21205 0.99254 0.93803 0.99542 1.20893 0.94313 0.99462 1.00092 1.20839 0.97975 0.93419 1.01735 1.20808 0.89454 0.93784 1.02660 1.98317 1.33573 1.88642 1.84579 1.22275 0.99438 0.99013 0.96143 1.22458 0.99876 0.81812 0.96834 1.87750 1.74164 1.25126 1.43794 0.91398 0.96721 0.85831 0.92864 0.92572 0.92068 0.93238 0.93372 0.92570 0.90242 0.92970 0.84704 0.86223 0.86212 0.86043 0.92709 0.92185 0.91789 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 6.37 37.16 0.24 -3.75 16 2 C 0.12 2.62 1.11 -90.57 -0.10 2.52 16 3 C -0.14 -2.57 8.83 37.16 0.33 -2.24 16 4 C -0.13 -2.87 3.46 -26.59 -0.09 -2.96 16 5 C 0.06 1.17 0.28 -155.47 -0.04 1.12 16 6 C -0.51 -11.97 3.69 -34.44 -0.13 -12.10 16 7 H 0.08 2.07 8.05 -52.49 -0.42 1.65 16 8 C 0.09 2.22 2.75 -17.82 -0.05 2.17 16 9 N -0.88 -23.44 13.12 55.43 0.73 -22.71 16 10 Si 0.86 19.76 21.73 -169.99 -3.69 16.07 16 11 H -0.28 -6.45 6.74 56.52 0.38 -6.07 16 12 H -0.31 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.25 -5.35 4.60 56.52 0.26 -5.09 16 14 C -0.10 -1.91 3.86 -27.88 -0.11 -2.02 16 15 C -0.03 -0.50 4.11 -104.59 -0.43 -0.93 16 16 C -0.08 -1.43 8.80 -39.59 -0.35 -1.78 16 17 C -0.12 -1.83 10.05 -39.58 -0.40 -2.22 16 18 C -0.13 -1.80 10.05 -39.59 -0.40 -2.20 16 19 C -0.12 -1.78 9.83 -39.55 -0.39 -2.17 16 20 C -0.04 -0.68 5.08 -39.50 -0.20 -0.88 16 21 Cl -0.08 -1.27 24.28 -51.86 -1.26 -2.53 16 22 C -0.13 -2.59 3.37 -26.59 -0.09 -2.68 16 23 C 0.07 1.33 6.43 37.21 0.24 1.57 16 24 O -0.39 -8.25 10.24 -35.23 -0.36 -8.61 16 25 H 0.07 1.65 3.80 -51.93 -0.20 1.45 16 26 H 0.01 0.31 8.07 -51.93 -0.42 -0.11 16 27 H 0.12 3.06 3.21 -51.93 -0.17 2.90 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.98 8.11 -51.93 -0.42 0.55 16 30 H 0.06 1.11 8.08 -51.93 -0.42 0.70 16 31 H 0.05 1.10 1.75 -51.93 -0.09 1.01 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.08 1.66 4.45 -51.93 -0.23 1.42 16 35 H 0.05 0.99 6.84 -51.93 -0.36 0.64 16 36 H 0.14 2.57 7.95 -52.49 -0.42 2.15 16 37 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.05 1.05 6.11 -51.93 -0.32 0.73 16 41 H 0.06 1.21 6.44 -51.93 -0.33 0.87 16 42 H 0.06 1.38 5.73 -51.93 -0.30 1.08 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -25.42 311.39 -7.79 -33.21 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.92 Total: 8.42 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -1.97 Total: -28.55 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.73 Total: -22.71 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.36 Total: -8.61 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -3.69 Total: 16.07 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.26 Total: -2.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -25.42 -7.79 -33.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005478244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.776 kcal (2) G-P(sol) polarization free energy of solvation -25.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds