Wall clock time and date at job start Fri Apr 10 2020 17:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 119.99742 * 2 1 4 4 C 1.50699 * 109.47415 * 275.00244 * 3 2 1 5 5 H 1.07998 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00227 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00268 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00167 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47489 * 59.99701 * 8 6 4 10 10 H 1.48504 * 109.47241 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47032 * 299.99681 * 8 6 4 12 12 S 1.65599 * 119.99877 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.39905 * 156.45647 * 12 2 1 14 14 O 1.42095 * 106.40452 * 23.53916 * 12 2 1 15 15 N 1.65602 * 107.21657 * 269.99379 * 12 2 1 16 16 C 1.46498 * 119.99612 * 65.28266 * 15 12 2 17 17 C 1.53786 * 113.61223 * 243.85742 * 16 15 12 18 18 C 1.53962 * 87.01837 * 220.04986 * 17 16 15 19 19 C 1.53000 * 113.53260 * 270.81178 * 18 17 16 20 20 O 1.42904 * 109.47001 * 277.49639 * 19 18 17 21 21 C 1.52994 * 113.66336 * 139.93424 * 18 17 16 22 22 O 1.42900 * 109.47316 * 82.44206 * 21 18 17 23 23 C 1.53776 * 113.61544 * 146.25205 * 16 15 12 24 24 H 1.09000 * 109.46746 * 269.99398 * 1 2 3 25 25 H 1.08995 * 109.47307 * 29.99413 * 1 2 3 26 26 H 1.09005 * 109.46998 * 149.99889 * 1 2 3 27 27 H 1.09002 * 109.47321 * 35.00301 * 3 2 1 28 28 H 1.09000 * 109.46992 * 155.00115 * 3 2 1 29 29 H 0.97000 * 120.00438 * 180.02562 * 7 6 4 30 30 H 0.97001 * 119.99942 * 244.99790 * 15 12 2 31 31 H 1.09002 * 112.85017 * 15.05428 * 16 15 12 32 32 H 1.08996 * 113.61299 * 334.56860 * 17 16 15 33 33 H 1.08992 * 113.61144 * 105.46931 * 17 16 15 34 34 H 1.08998 * 109.47705 * 37.49297 * 19 18 17 35 35 H 1.09002 * 109.46788 * 157.50114 * 19 18 17 36 36 H 0.96704 * 113.99834 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.46940 * 202.43655 * 21 18 17 38 38 H 1.09002 * 109.47419 * 322.43496 * 21 18 17 39 39 H 0.96699 * 114.00159 * 180.02562 * 22 21 18 40 40 H 1.09006 * 113.61692 * 254.52705 * 23 16 15 41 41 H 1.09006 * 113.61630 * 25.34107 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7658 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 3.0005 2.9504 -1.6664 7 7 3.5041 3.6465 -0.6707 8 14 3.1782 3.5669 -3.4207 9 1 1.8317 3.7734 -4.0117 10 1 3.9219 4.8523 -3.4208 11 1 3.9231 2.5647 -4.2245 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5451 14 8 1.4114 -2.4063 -0.5455 15 7 2.5382 -1.8593 1.5810 16 6 1.3952 -2.1847 2.4376 17 6 1.2097 -1.2111 3.6135 18 6 0.8623 -2.4409 4.4722 19 6 -0.6266 -2.7928 4.4611 20 8 -1.3167 -1.9736 5.4072 21 6 1.4522 -2.3912 5.8830 22 8 0.6090 -1.6017 6.7243 23 6 1.6986 -3.2703 3.4836 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6501 2.0043 0.5895 28 1 3.1857 1.1177 0.4343 29 1 3.9676 4.4801 -0.8472 30 1 3.4389 -1.8968 1.9391 31 1 0.4809 -2.3662 1.8725 32 1 2.1303 -0.7126 3.9169 33 1 0.3770 -0.5204 3.4812 34 1 -1.0338 -2.6191 3.4651 35 1 -0.7539 -3.8419 4.7279 36 1 -2.2676 -2.1430 5.4543 37 1 1.5209 -3.4025 6.2838 38 1 2.4468 -1.9468 5.8455 39 1 0.9227 -1.5262 7.6359 40 1 1.2600 -4.2397 3.2467 41 1 2.7534 -3.3369 3.7504 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364026735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:38 Heat of formation + Delta-G solvation = -181.946526 kcal Electronic energy + Delta-G solvation = -24907.439239 eV Core-core repulsion = 21141.896238 eV Total energy + Delta-G solvation = -3765.543000 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04959 -38.27088 -37.30816 -37.18240 -36.84829 -36.76242 -34.50670 -34.11671 -29.67477 -28.84842 -26.81964 -26.77757 -26.70208 -24.20935 -22.89373 -20.58383 -19.48825 -18.98309 -18.41881 -18.35292 -18.10946 -17.74215 -17.35196 -16.81480 -16.24419 -16.19613 -15.69384 -15.11025 -14.95937 -14.86542 -14.39537 -14.13425 -14.00791 -13.73816 -13.64053 -13.34740 -13.31741 -13.15788 -13.04985 -12.92510 -12.89889 -12.55979 -12.47867 -12.37856 -12.02129 -11.81677 -11.73312 -11.62191 -11.26045 -10.60865 -10.60519 -10.56252 -10.32843 -9.77982 -8.20395 -6.32662 -0.30244 1.39044 1.42668 1.49788 2.04220 2.40410 2.64635 3.08361 3.10424 3.34881 3.49636 3.53668 3.79548 4.01530 4.08608 4.10321 4.22846 4.38022 4.53577 4.60499 4.66565 4.67890 4.75503 4.79573 4.82037 4.87672 5.03550 5.06186 5.15877 5.18213 5.20577 5.42448 5.50650 5.69298 5.86245 6.09169 6.17197 6.75546 7.11485 7.12782 7.36260 8.86980 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.003909 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.488987 B = 7161.398069 C = 7606.283440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.002 6.002 3 C 0.275 3.725 4 C -0.551 4.551 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.957 3.043 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.277 1.277 12 S 2.796 3.204 13 O -1.013 7.013 14 O -1.008 7.008 15 N -1.105 6.105 16 C 0.117 3.883 17 C -0.138 4.138 18 C -0.082 4.082 19 C 0.098 3.902 20 O -0.562 6.562 21 C 0.097 3.903 22 O -0.564 6.564 23 C -0.113 4.113 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.016 0.984 29 H 0.267 0.733 30 H 0.423 0.577 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.382 0.618 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.380 0.620 40 H 0.098 0.902 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 -14.838 15.097 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.843 5.843 3 C 0.151 3.849 4 C -0.591 4.591 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.203 1.203 12 S 2.804 3.196 13 O -0.997 6.997 14 O -0.992 6.992 15 N -0.866 5.866 16 C 0.009 3.991 17 C -0.177 4.177 18 C -0.083 4.083 19 C 0.020 3.980 20 O -0.368 6.368 21 C 0.019 3.981 22 O -0.369 6.369 23 C -0.152 4.152 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.258 0.742 31 H 0.132 0.868 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.230 0.770 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.228 0.772 40 H 0.116 0.884 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.180 -14.862 13.804 21.517 hybrid contribution 0.433 0.681 -0.117 0.815 sum -6.747 -14.181 13.687 20.832 Atomic orbital electron populations 1.21568 0.78317 1.03621 1.02208 1.57443 1.15578 1.21953 1.89351 1.18556 0.90313 0.80260 0.95769 1.21826 1.36332 1.06715 0.94203 0.92968 1.25748 0.94747 0.96732 1.01492 1.70004 1.37783 1.15746 1.32884 0.85637 0.78822 0.77573 0.79860 1.18811 1.20093 1.20255 1.01258 0.72084 0.72473 0.73774 1.93574 1.42929 1.85439 1.77723 1.93500 1.67695 1.60073 1.77910 1.55760 1.15530 1.84511 1.30787 1.22544 0.88639 0.97556 0.90325 1.23563 1.02083 0.96876 0.95208 1.21796 0.95308 0.97233 0.93943 1.21866 0.89998 0.94057 0.92069 1.86742 1.24802 1.63366 1.61854 1.21986 0.92149 0.94711 0.89281 1.86758 1.51767 1.73582 1.24793 1.23334 1.01702 0.97889 0.92319 0.91337 0.91199 0.90484 0.95629 0.96631 0.92365 0.74157 0.86774 0.89818 0.91845 0.93366 0.92087 0.77013 0.92513 0.93564 0.77245 0.88387 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.97 10.68 127.77 1.36 4.34 16 2 N -1.00 -41.63 3.23 -543.23 -1.75 -43.39 16 3 C 0.27 14.16 5.08 85.63 0.43 14.60 16 4 C -0.55 -31.72 9.38 25.60 0.24 -31.48 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.71 5.46 84.65 0.46 1.17 16 7 N -0.92 -54.93 13.29 21.45 0.28 -54.64 16 8 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 9 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 S 2.80 109.48 6.08 -56.49 -0.34 109.14 16 13 O -1.01 -49.29 17.11 -128.00 -2.19 -51.48 16 14 O -1.01 -40.50 16.24 -128.00 -2.08 -42.58 16 15 N -1.10 -30.85 5.85 -167.20 -0.98 -31.83 16 16 C 0.12 2.63 4.09 45.52 0.19 2.82 16 17 C -0.14 -3.16 7.00 31.18 0.22 -2.95 16 18 C -0.08 -1.46 1.08 -51.60 -0.06 -1.52 16 19 C 0.10 1.62 6.39 71.98 0.46 2.08 16 20 O -0.56 -10.88 11.12 -126.46 -1.41 -12.28 16 21 C 0.10 1.59 6.52 71.98 0.47 2.06 16 22 O -0.56 -11.03 11.12 -126.46 -1.41 -12.44 16 23 C -0.11 -1.78 7.01 31.12 0.22 -1.56 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 26 H 0.08 2.39 7.02 -2.38 -0.02 2.38 16 27 H 0.03 1.35 8.11 -2.39 -0.02 1.33 16 28 H 0.02 0.87 7.61 -2.39 -0.02 0.85 16 29 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.42 10.21 8.93 -96.74 -0.86 9.35 16 31 H 0.11 2.55 7.27 -2.39 -0.02 2.54 16 32 H 0.08 2.02 7.97 -2.39 -0.02 2.00 16 33 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 34 H 0.05 0.76 7.34 -2.39 -0.02 0.75 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.38 4.19 9.12 -74.05 -0.68 3.52 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 0.72 7.95 -2.39 -0.02 0.70 16 39 H 0.38 4.28 9.12 -74.06 -0.68 3.61 16 40 H 0.10 1.22 8.10 -2.38 -0.02 1.21 16 41 H 0.11 1.43 8.10 -2.38 -0.02 1.41 16 Total: -1.00 -78.89 350.94 -4.99 -83.89 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -1.15 Total: 18.94 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 4.00 Total: -10.45 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -2.45 Total: -129.86 kcal Atomic # 8 Polarization: -111.70 SS G_CDS: -7.08 Total: -118.78 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 109.48 SS G_CDS: -0.34 Total: 109.14 kcal Total: -78.89 -4.99 -83.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364026735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.061 kcal (2) G-P(sol) polarization free energy of solvation -78.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds