Wall clock time and date at job start Fri Apr 10 2020 17:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99895 * 2 1 4 4 O 1.21277 * 120.00181 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00109 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47442 * 54.99443 * 5 3 2 7 7 O 1.42901 * 109.47485 * 174.99995 * 5 3 2 8 8 C 1.53003 * 109.46705 * 294.99737 * 5 3 2 9 9 N 1.46508 * 109.47059 * 180.02562 * 8 5 3 10 10 C 1.34775 * 119.99759 * 180.02562 * 9 8 5 11 11 O 1.21581 * 120.00221 * 359.97438 * 10 9 8 12 12 C 1.47538 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.39667 * 120.19899 * 359.97438 * 12 10 9 14 14 C 1.37827 * 119.91974 * 180.02562 * 13 12 10 15 15 C 1.38567 * 120.32168 * 359.97438 * 14 13 12 16 16 C 1.38018 * 120.40588 * 0.02562 * 15 14 13 17 17 C 1.38838 * 120.06990 * 0.02562 * 16 15 14 18 18 O 1.35520 * 120.15763 * 179.97438 * 17 16 15 19 19 C 1.34814 * 117.00329 * 354.39850 * 18 17 16 20 20 H 1.07997 * 119.99773 * 5.06346 * 19 18 17 21 21 C 1.38697 * 119.99986 * 185.06090 * 19 18 17 22 22 N 1.31519 * 120.00268 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00152 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46992 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47402 * 120.00114 * 23 21 19 26 26 H 1.48499 * 109.47443 * 240.00616 * 23 21 19 27 27 H 1.08999 * 109.47513 * 59.99817 * 1 2 3 28 28 H 1.08998 * 109.46931 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46969 * 299.99972 * 1 2 3 30 30 H 0.96999 * 120.00385 * 180.02562 * 2 1 3 31 31 H 0.96695 * 113.99891 * 59.99651 * 7 5 3 32 32 H 1.08998 * 109.47235 * 60.00192 * 8 5 3 33 33 H 1.08996 * 109.47440 * 299.99470 * 8 5 3 34 34 H 0.97000 * 119.99779 * 359.97438 * 9 8 5 35 35 H 1.08005 * 120.03846 * 0.02562 * 13 12 10 36 36 H 1.08006 * 119.83463 * 180.02562 * 14 13 12 37 37 H 1.08006 * 119.79500 * 179.74838 * 15 14 13 38 38 H 1.08006 * 119.96945 * 180.02562 * 16 15 14 39 39 H 0.97004 * 120.00647 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0089 0.5779 -0.8426 7 8 4.1222 2.5094 -0.1179 8 6 4.1563 0.5574 1.3065 9 7 5.6214 0.5580 1.3063 10 6 6.2955 0.0641 2.3637 11 8 5.6880 -0.3814 3.3179 12 6 7.7709 0.0652 2.3636 13 6 8.4731 0.5765 1.2699 14 6 9.8513 0.5742 1.2757 15 6 10.5454 0.0672 2.3626 16 6 9.8651 -0.4413 3.4505 17 6 8.4768 -0.4482 3.4616 18 8 7.8070 -0.9475 4.5287 19 6 8.5438 -1.5284 5.4967 20 1 9.6221 -1.5076 5.4405 21 6 7.9170 -2.1527 6.5649 22 7 6.6038 -2.1785 6.6332 23 14 8.9378 -2.9570 7.9067 24 1 10.3808 -2.7899 7.5981 25 1 8.6338 -2.3162 9.2114 26 1 8.6107 -4.4037 7.9776 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.8371 3.0920 0.5993 32 1 3.7930 -0.4664 1.3960 33 1 3.7933 1.1467 2.1486 34 1 6.1061 0.9131 0.5448 35 1 7.9366 0.9732 0.4206 36 1 10.3929 0.9703 0.4294 37 1 11.6255 0.0659 2.3564 38 1 10.4132 -0.8344 4.2940 39 1 6.1654 -2.6154 7.3801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364067323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:41 Heat of formation + Delta-G solvation = -115.803714 kcal Electronic energy + Delta-G solvation = -24873.674349 eV Core-core repulsion = 20975.555565 eV Total energy + Delta-G solvation = -3898.118784 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36683 -39.55305 -38.17252 -36.81283 -36.34924 -34.99020 -33.83568 -32.36322 -31.01135 -29.62674 -28.93570 -26.77225 -25.40899 -24.11811 -22.63937 -21.34970 -20.96112 -19.98097 -18.38986 -18.09617 -17.79911 -16.84581 -16.37699 -15.92949 -15.43443 -15.20796 -15.06456 -14.63547 -14.32041 -14.20820 -14.15250 -13.90431 -13.70113 -13.44440 -13.09173 -12.66890 -12.59713 -12.51765 -12.26424 -12.01387 -11.74031 -11.34125 -11.15978 -11.00918 -10.93408 -10.78512 -10.46255 -9.94131 -9.59956 -9.47209 -8.92100 -8.90157 -8.69420 -8.29364 -7.33320 -6.47255 -4.07061 1.68876 2.21722 2.30316 2.81824 3.10188 3.10747 3.16610 3.51081 3.69224 3.91344 4.15117 4.41003 4.51780 4.60461 4.75907 4.95942 5.04801 5.15293 5.21436 5.38907 5.50113 5.51341 5.57047 5.65793 5.77434 6.02568 6.05587 6.10329 6.54504 6.66152 6.78434 6.89513 7.03222 7.04758 7.21701 7.27483 7.30242 7.67511 7.83495 7.89076 8.04679 8.92596 9.01810 9.64906 10.66691 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014579 B = 0.003592 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.114244 B = 7794.194464 C = 9473.677197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.730 5.730 3 C 0.490 3.510 4 O -0.530 6.530 5 C 0.083 3.917 6 H 0.131 0.869 7 O -0.534 6.534 8 C 0.100 3.900 9 N -0.738 5.738 10 C 0.555 3.445 11 O -0.501 6.501 12 C -0.228 4.228 13 C -0.037 4.037 14 C -0.230 4.230 15 C -0.050 4.050 16 C -0.238 4.238 17 C 0.190 3.810 18 O -0.125 6.125 19 C -0.403 4.403 20 H 0.095 0.905 21 C 0.045 3.955 22 N -0.833 5.833 23 Si 0.941 3.059 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.406 0.594 31 H 0.388 0.612 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.398 0.602 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 2.491 -13.228 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.384 5.384 3 C 0.275 3.725 4 O -0.406 6.406 5 C 0.020 3.980 6 H 0.148 0.852 7 O -0.339 6.339 8 C -0.025 4.025 9 N -0.396 5.396 10 C 0.345 3.655 11 O -0.375 6.375 12 C -0.233 4.233 13 C -0.056 4.056 14 C -0.249 4.249 15 C -0.069 4.069 16 C -0.257 4.257 17 C 0.130 3.870 18 O -0.023 6.023 19 C -0.479 4.479 20 H 0.112 0.888 21 C -0.163 4.163 22 N -0.465 5.465 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.240 0.760 31 H 0.238 0.762 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.234 0.766 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.359 2.584 -12.769 14.086 hybrid contribution 0.710 -0.482 0.739 1.133 sum -4.649 2.101 -12.029 13.066 Atomic orbital electron populations 1.21580 0.79314 1.02536 1.02429 1.45870 1.08142 1.08867 1.75520 1.21440 0.90918 0.84091 0.76041 1.90730 1.69898 1.31261 1.48705 1.22105 0.89462 0.86427 1.00031 0.85153 1.86568 1.74924 1.19112 1.53281 1.21720 0.82897 1.01825 0.96086 1.45735 1.05071 1.66776 1.21983 1.18256 0.87525 0.77794 0.81921 1.90954 1.69367 1.44025 1.33153 1.18789 0.91574 1.16136 0.96790 1.20787 0.94254 0.95267 0.95258 1.20477 0.93789 1.10470 1.00184 1.20907 0.98722 0.94466 0.92778 1.21165 0.93780 1.09572 1.01217 1.19272 0.90202 0.90551 0.86945 1.84168 1.34194 1.60299 1.23641 1.21551 0.91218 1.34717 1.00424 0.88798 1.25381 0.96117 0.96657 0.98145 1.70134 1.07803 1.38504 1.30046 0.85661 0.79278 0.78846 0.79708 1.18953 1.20012 1.20009 0.92155 0.90369 0.91986 0.75968 0.76245 0.90433 0.90897 0.76598 0.86886 0.87210 0.87163 0.85058 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.85 0.64 1.27 16 2 N -0.73 -6.14 5.67 -67.08 -0.38 -6.52 16 3 C 0.49 5.49 7.17 -10.99 -0.08 5.41 16 4 O -0.53 -7.89 16.32 -14.30 -0.23 -8.13 16 5 C 0.08 0.83 3.47 -27.88 -0.10 0.74 16 6 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 7 O -0.53 -6.02 12.74 -55.09 -0.70 -6.72 16 8 C 0.10 1.27 5.29 -4.04 -0.02 1.25 16 9 N -0.74 -11.06 5.40 -61.34 -0.33 -11.39 16 10 C 0.56 11.71 7.76 -12.47 -0.10 11.62 16 11 O -0.50 -13.24 15.17 -16.56 -0.25 -13.49 16 12 C -0.23 -4.83 5.89 -104.81 -0.62 -5.44 16 13 C -0.04 -0.62 9.53 -39.20 -0.37 -0.99 16 14 C -0.23 -3.70 10.02 -39.61 -0.40 -4.10 16 15 C -0.05 -0.87 10.03 -39.54 -0.40 -1.27 16 16 C -0.24 -5.04 9.16 -39.44 -0.36 -5.40 16 17 C 0.19 4.63 6.66 -38.60 -0.26 4.38 16 18 O -0.12 -3.63 7.84 -21.05 -0.16 -3.80 16 19 C -0.40 -11.27 9.49 30.90 0.29 -10.98 16 20 H 0.09 2.39 5.21 -52.49 -0.27 2.11 16 21 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 22 N -0.83 -24.81 13.67 55.48 0.76 -24.05 16 23 Si 0.94 20.28 29.55 -169.99 -5.02 15.25 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.41 2.44 8.61 -40.82 -0.35 2.09 16 31 H 0.39 3.88 8.79 45.56 0.40 4.28 16 32 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.40 4.95 6.38 -40.82 -0.26 4.69 16 35 H 0.11 1.46 6.40 -52.48 -0.34 1.12 16 36 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 37 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -37.51 342.43 -6.65 -44.16 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -3.62 Total: 11.90 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.86 Total: -2.38 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.05 Total: -41.96 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.35 Total: -32.14 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.51 -6.65 -44.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364067323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.646 kcal (2) G-P(sol) polarization free energy of solvation -37.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds