Wall clock time and date at job start Fri Apr 10 2020 17:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99895 * 2 1 4 4 O 1.21277 * 120.00181 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00109 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47442 * 54.99443 * 5 3 2 7 7 O 1.42901 * 109.47485 * 174.99995 * 5 3 2 8 8 C 1.53003 * 109.46705 * 294.99737 * 5 3 2 9 9 N 1.46508 * 109.47059 * 180.02562 * 8 5 3 10 10 C 1.34775 * 119.99759 * 180.02562 * 9 8 5 11 11 O 1.21581 * 120.00221 * 359.97438 * 10 9 8 12 12 C 1.47538 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.39667 * 120.19899 * 359.97438 * 12 10 9 14 14 C 1.37827 * 119.91974 * 180.02562 * 13 12 10 15 15 C 1.38567 * 120.32168 * 359.97438 * 14 13 12 16 16 C 1.38018 * 120.40588 * 0.02562 * 15 14 13 17 17 C 1.38838 * 120.06990 * 0.02562 * 16 15 14 18 18 O 1.35520 * 120.15763 * 179.97438 * 17 16 15 19 19 C 1.34814 * 117.00329 * 354.39850 * 18 17 16 20 20 H 1.07997 * 119.99773 * 5.06346 * 19 18 17 21 21 C 1.38697 * 119.99986 * 185.06090 * 19 18 17 22 22 N 1.31519 * 120.00268 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00152 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46992 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47402 * 120.00114 * 23 21 19 26 26 H 1.48499 * 109.47443 * 240.00616 * 23 21 19 27 27 H 1.08999 * 109.47513 * 59.99817 * 1 2 3 28 28 H 1.08998 * 109.46931 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46969 * 299.99972 * 1 2 3 30 30 H 0.96999 * 120.00385 * 180.02562 * 2 1 3 31 31 H 0.96695 * 113.99891 * 59.99651 * 7 5 3 32 32 H 1.08998 * 109.47235 * 60.00192 * 8 5 3 33 33 H 1.08996 * 109.47440 * 299.99470 * 8 5 3 34 34 H 0.97000 * 119.99779 * 359.97438 * 9 8 5 35 35 H 1.08005 * 120.03846 * 0.02562 * 13 12 10 36 36 H 1.08006 * 119.83463 * 180.02562 * 14 13 12 37 37 H 1.08006 * 119.79500 * 179.74838 * 15 14 13 38 38 H 1.08006 * 119.96945 * 180.02562 * 16 15 14 39 39 H 0.97004 * 120.00647 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0089 0.5779 -0.8426 7 8 4.1222 2.5094 -0.1179 8 6 4.1563 0.5574 1.3065 9 7 5.6214 0.5580 1.3063 10 6 6.2955 0.0641 2.3637 11 8 5.6880 -0.3814 3.3179 12 6 7.7709 0.0652 2.3636 13 6 8.4731 0.5765 1.2699 14 6 9.8513 0.5742 1.2757 15 6 10.5454 0.0672 2.3626 16 6 9.8651 -0.4413 3.4505 17 6 8.4768 -0.4482 3.4616 18 8 7.8070 -0.9475 4.5287 19 6 8.5438 -1.5284 5.4967 20 1 9.6221 -1.5076 5.4405 21 6 7.9170 -2.1527 6.5649 22 7 6.6038 -2.1785 6.6332 23 14 8.9378 -2.9570 7.9067 24 1 10.3808 -2.7899 7.5981 25 1 8.6338 -2.3162 9.2114 26 1 8.6107 -4.4037 7.9776 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.8371 3.0920 0.5993 32 1 3.7930 -0.4664 1.3960 33 1 3.7933 1.1467 2.1486 34 1 6.1061 0.9131 0.5448 35 1 7.9366 0.9732 0.4206 36 1 10.3929 0.9703 0.4294 37 1 11.6255 0.0659 2.3564 38 1 10.4132 -0.8344 4.2940 39 1 6.1654 -2.6154 7.3801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364067323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:41 Heat of formation + Delta-G solvation = -147.619079 kcal Electronic energy + Delta-G solvation = -24875.053967 eV Core-core repulsion = 20975.555565 eV Total energy + Delta-G solvation = -3899.498402 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45993 -41.02299 -39.77342 -38.02980 -37.81735 -35.90116 -35.17165 -34.30646 -32.41996 -30.75108 -30.53569 -27.73344 -27.26245 -25.26391 -24.03518 -22.93768 -21.91919 -21.38911 -19.84966 -19.42052 -19.24540 -18.01250 -17.69888 -17.21308 -16.60842 -16.36613 -16.21715 -16.16590 -15.87568 -15.65612 -15.52393 -15.28149 -15.01607 -14.88247 -14.32142 -14.15285 -13.89223 -13.59719 -13.53682 -13.11979 -13.01824 -12.95817 -12.67704 -12.53112 -12.31331 -12.09052 -11.93352 -11.42623 -10.95743 -10.83120 -10.55739 -10.25586 -10.15728 -9.77518 -9.01896 -8.43882 -6.14368 0.13950 0.74858 1.29907 1.33702 1.43765 1.52970 1.98202 2.09654 2.16553 2.33427 2.88979 3.23232 3.25627 3.46924 3.48728 3.67451 3.89332 4.01704 4.11173 4.30831 4.42093 4.50060 4.55420 4.58186 4.62895 4.70168 4.90741 4.99929 5.09456 5.16133 5.29898 5.43320 5.50327 5.62863 5.72203 5.97440 6.18848 6.26759 6.48907 6.66745 6.96047 7.04222 7.46300 7.81399 8.76756 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014579 B = 0.003592 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.114244 B = 7794.194464 C = 9473.677197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.719 5.719 3 C 0.487 3.513 4 O -0.572 6.572 5 C 0.101 3.899 6 H 0.165 0.835 7 O -0.541 6.541 8 C 0.100 3.900 9 N -0.710 5.710 10 C 0.550 3.450 11 O -0.566 6.566 12 C -0.244 4.244 13 C -0.028 4.028 14 C -0.201 4.201 15 C -0.040 4.040 16 C -0.259 4.259 17 C 0.150 3.850 18 O -0.188 6.188 19 C -0.427 4.427 20 H 0.106 0.894 21 C -0.021 4.021 22 N -0.905 5.905 23 Si 1.020 2.980 24 H -0.246 1.246 25 H -0.270 1.270 26 H -0.268 1.268 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.419 0.581 31 H 0.392 0.608 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.415 0.585 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.152 0.848 38 H 0.122 0.878 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 3.064 -16.681 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.372 5.372 3 C 0.273 3.727 4 O -0.451 6.451 5 C 0.038 3.962 6 H 0.182 0.818 7 O -0.347 6.347 8 C -0.025 4.025 9 N -0.366 5.366 10 C 0.340 3.660 11 O -0.445 6.445 12 C -0.249 4.249 13 C -0.046 4.046 14 C -0.220 4.220 15 C -0.058 4.058 16 C -0.278 4.278 17 C 0.095 3.905 18 O -0.091 6.091 19 C -0.502 4.502 20 H 0.123 0.877 21 C -0.220 4.220 22 N -0.540 5.540 23 Si 0.839 3.161 24 H -0.169 1.169 25 H -0.195 1.195 26 H -0.193 1.193 27 H 0.076 0.924 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.256 0.744 31 H 0.242 0.758 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.254 0.746 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.170 0.830 38 H 0.140 0.860 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.909 3.178 -16.337 16.896 hybrid contribution 0.061 -0.456 1.365 1.441 sum -2.848 2.722 -14.972 15.482 Atomic orbital electron populations 1.21726 0.78542 1.04432 1.01641 1.45873 1.08814 1.08760 1.73779 1.21613 0.91337 0.84156 0.75634 1.90717 1.70653 1.32793 1.50950 1.22071 0.88716 0.86161 0.99260 0.81832 1.86541 1.75012 1.19536 1.53598 1.21820 0.81292 1.02179 0.97231 1.45412 1.06055 1.64547 1.20609 1.18484 0.87939 0.77324 0.82206 1.90940 1.70526 1.47126 1.35929 1.19259 0.92072 1.16152 0.97434 1.21321 0.95094 0.93488 0.94740 1.21179 0.93556 1.06688 1.00533 1.21428 1.00929 0.92128 0.91341 1.21302 0.92684 1.11001 1.02827 1.20072 0.92088 0.91044 0.87284 1.84169 1.35618 1.63697 1.25622 1.22061 0.91945 1.35194 1.01041 0.87657 1.26706 0.97361 0.97176 1.00742 1.70315 1.10242 1.41811 1.31680 0.84522 0.78133 0.77586 0.75840 1.16943 1.19506 1.19329 0.92350 0.87171 0.93393 0.74392 0.75789 0.89929 0.92954 0.74570 0.82158 0.81930 0.82990 0.86004 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.70 127.77 1.37 2.46 16 2 N -0.72 -11.05 5.67 -484.53 -2.75 -13.80 16 3 C 0.49 10.36 7.17 87.66 0.63 10.99 16 4 O -0.57 -16.89 16.32 15.97 0.26 -16.63 16 5 C 0.10 1.81 3.47 29.85 0.10 1.91 16 6 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 7 O -0.54 -11.03 12.74 -129.99 -1.66 -12.68 16 8 C 0.10 2.47 5.29 86.38 0.46 2.92 16 9 N -0.71 -20.23 5.40 -466.26 -2.52 -22.75 16 10 C 0.55 23.64 7.76 86.70 0.67 24.31 16 11 O -0.57 -31.95 15.17 16.92 0.26 -31.69 16 12 C -0.24 -10.23 5.89 -19.99 -0.12 -10.35 16 13 C -0.03 -0.81 9.53 22.52 0.21 -0.60 16 14 C -0.20 -5.20 10.02 22.25 0.22 -4.98 16 15 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 16 C -0.26 -10.86 9.16 22.36 0.20 -10.66 16 17 C 0.15 7.57 6.66 22.91 0.15 7.73 16 18 O -0.19 -11.78 7.84 0.84 0.01 -11.78 16 19 C -0.43 -25.46 9.49 67.93 0.64 -24.81 16 20 H 0.11 5.66 5.21 -2.91 -0.02 5.64 16 21 C -0.02 -1.21 5.49 84.85 0.47 -0.74 16 22 N -0.90 -58.24 13.67 21.62 0.30 -57.94 16 23 Si 1.02 43.66 29.55 68.60 2.03 45.68 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.42 4.18 8.61 -92.71 -0.80 3.39 16 31 H 0.39 7.45 8.79 -74.06 -0.65 6.80 16 32 H 0.08 2.01 7.92 -2.39 -0.02 1.99 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.42 8.79 6.38 -92.71 -0.59 8.20 16 35 H 0.16 3.08 6.40 -2.91 -0.02 3.06 16 36 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 38 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 39 H 0.27 15.90 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -92.99 342.43 0.26 -92.73 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.90 Total: 31.66 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.24 Total: -2.80 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -4.97 Total: -94.50 kcal Atomic # 8 Polarization: -71.64 SS G_CDS: -1.13 Total: -72.77 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -92.99 0.26 -92.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364067323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.892 kcal (2) G-P(sol) polarization free energy of solvation -92.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds