Wall clock time and date at job start Fri Apr 10 2020 17:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00222 * 2 1 4 4 C 1.50699 * 109.46947 * 275.00019 * 3 2 1 5 5 H 1.08005 * 120.00266 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00069 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99877 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00104 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47075 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47113 * 120.00138 * 8 6 4 11 11 H 1.48504 * 109.47080 * 240.00110 * 8 6 4 12 12 S 1.65609 * 119.99875 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40185 * 343.12063 * 12 2 1 14 14 O 1.42100 * 106.39993 * 210.19992 * 12 2 1 15 15 N 1.65602 * 107.21443 * 96.65876 * 12 2 1 16 16 C 1.47424 * 125.64742 * 83.27341 * 15 12 2 17 17 C 1.54906 * 104.83140 * 204.15998 * 16 15 12 18 18 H 1.09000 * 111.00667 * 81.06328 * 17 16 15 19 19 O 1.42903 * 111.00487 * 204.87667 * 17 16 15 20 20 C 1.55153 * 101.61754 * 322.97025 * 17 16 15 21 21 C 1.47017 * 125.64667 * 263.30992 * 15 12 2 22 22 C 1.52994 * 109.88582 * 59.33655 * 21 15 12 23 23 C 1.53002 * 109.88464 * 298.32219 * 21 15 12 24 24 O 1.42898 * 109.47293 * 179.97438 * 23 21 15 25 25 H 1.09000 * 109.46961 * 274.95810 * 1 2 3 26 26 H 1.09000 * 109.47258 * 34.95685 * 1 2 3 27 27 H 1.09002 * 109.47548 * 154.96239 * 1 2 3 28 28 H 1.09002 * 109.47287 * 34.99880 * 3 2 1 29 29 H 1.08997 * 109.47342 * 155.00297 * 3 2 1 30 30 H 0.97000 * 119.99933 * 179.97438 * 7 6 4 31 31 H 1.08998 * 110.36921 * 85.31830 * 16 15 12 32 32 H 1.09003 * 110.46232 * 323.04812 * 16 15 12 33 33 H 0.96698 * 114.00172 * 295.41870 * 19 17 16 34 34 H 1.09000 * 110.72115 * 153.87897 * 20 17 16 35 35 H 1.08993 * 110.72355 * 277.16076 * 20 17 16 36 36 H 1.08999 * 109.47071 * 53.93438 * 22 21 15 37 37 H 1.08995 * 109.47631 * 173.93379 * 22 21 15 38 38 H 1.08997 * 109.47257 * 293.93896 * 22 21 15 39 39 H 1.08996 * 109.47214 * 300.00839 * 23 21 15 40 40 H 1.09006 * 109.46971 * 60.00254 * 23 21 15 41 41 H 0.96700 * 113.99845 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9289 1.1934 -2.2333 6 6 2.9998 2.9507 -1.6664 7 7 3.5017 3.6478 -0.6705 8 14 3.1775 3.5671 -3.4208 9 1 2.5302 2.6071 -4.3507 10 1 2.5260 4.8954 -3.5472 11 1 4.6184 3.6882 -3.7593 12 16 2.2930 -1.4342 0.0006 13 8 1.3639 -2.4337 0.3969 14 8 3.5139 -1.1923 0.6862 15 7 2.6969 -1.7677 -1.5704 16 6 3.8670 -1.2313 -2.2891 17 6 3.4797 -1.3038 -3.7872 18 1 2.8521 -0.4587 -4.0699 19 8 4.6430 -1.3737 -4.6142 20 6 2.6798 -2.6323 -3.8391 21 6 1.9475 -2.6470 -2.4796 22 6 0.5193 -2.1251 -2.6487 23 6 1.9181 -4.0707 -1.9199 24 8 1.1876 -4.9173 -2.8096 25 1 -0.3633 0.0888 1.0238 26 1 -0.3634 0.8422 -0.5888 27 1 -0.3634 -0.9311 -0.4349 28 1 1.6502 2.0043 0.5894 29 1 3.1858 1.1176 0.4342 30 1 3.9652 4.4814 -0.8471 31 1 4.7461 -1.8455 -2.0943 32 1 4.0541 -0.1984 -1.9952 33 1 5.2005 -0.5845 -4.5763 34 1 1.9657 -2.6205 -4.6625 35 1 3.3534 -3.4850 -3.9236 36 1 0.5485 -1.0815 -2.9620 37 1 0.0032 -2.7170 -3.4045 38 1 -0.0114 -2.2048 -1.7000 39 1 2.9377 -4.4425 -1.8190 40 1 1.4344 -4.0672 -0.9431 41 1 1.1286 -5.8372 -2.5174 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414310331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:03 Heat of formation + Delta-G solvation = -165.738250 kcal Electronic energy + Delta-G solvation = -26545.959060 eV Core-core repulsion = 22781.118904 eV Total energy + Delta-G solvation = -3764.840157 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.50635 -37.00496 -36.50978 -35.57395 -35.37761 -35.31050 -32.59362 -31.13502 -29.66838 -27.87065 -26.51972 -25.22675 -24.72067 -22.38969 -21.50040 -20.44433 -18.14119 -17.42887 -17.25962 -17.01085 -16.79036 -16.32968 -15.66102 -14.94832 -14.77774 -14.55665 -14.36403 -13.73002 -13.58146 -13.29856 -13.23829 -13.04550 -12.58971 -12.42783 -12.27069 -12.15894 -11.95234 -11.76336 -11.60551 -11.40446 -11.25014 -11.21674 -11.14737 -10.82695 -10.71588 -10.63167 -10.28210 -10.17080 -9.90795 -9.81741 -9.75297 -8.78273 -8.60111 -8.10726 -6.20930 -4.28150 1.12765 3.14506 3.23426 3.25201 3.31004 3.90785 4.24774 4.27257 4.39265 4.54657 4.83914 5.00489 5.08138 5.12784 5.26282 5.38112 5.47817 5.52943 5.63358 5.75078 5.85633 5.99081 6.03224 6.04308 6.06965 6.21467 6.22158 6.31123 6.41819 6.48776 6.56986 6.74992 7.26386 7.34848 7.54856 7.61065 7.76328 7.76480 8.05581 8.77917 9.37833 10.86899 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.007646 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.173742 B = 3661.051206 C = 4717.078312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.993 5.993 3 C 0.243 3.757 4 C -0.540 4.540 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.890 3.110 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.798 3.202 13 O -0.993 6.993 14 O -0.976 6.976 15 N -0.999 5.999 16 C 0.091 3.909 17 C 0.091 3.909 18 H 0.079 0.921 19 O -0.563 6.563 20 C -0.099 4.099 21 C 0.187 3.813 22 C -0.167 4.167 23 C 0.054 3.946 24 O -0.567 6.567 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.382 0.618 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -11.219 -4.749 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.835 5.835 3 C 0.120 3.880 4 C -0.579 4.579 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.717 3.283 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 S 2.807 3.193 13 O -0.978 6.978 14 O -0.960 6.960 15 N -0.838 5.838 16 C -0.034 4.034 17 C 0.031 3.969 18 H 0.097 0.903 19 O -0.368 6.368 20 C -0.138 4.138 21 C 0.099 3.901 22 C -0.225 4.225 23 C -0.025 4.025 24 O -0.371 6.371 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.230 0.770 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.234 -11.569 -4.306 12.761 hybrid contribution 0.351 0.913 -0.734 1.223 sum -2.883 -10.656 -5.040 12.135 Atomic orbital electron populations 1.21343 0.79984 1.02230 1.00983 1.57615 1.14273 1.23361 1.88299 1.19231 0.92051 0.79065 0.97606 1.21591 1.36580 1.06822 0.92924 0.91689 1.24972 0.95294 0.96477 0.97154 1.69942 1.36593 1.15106 1.30859 0.86585 0.77975 0.79122 0.84618 1.19577 1.20866 1.20756 1.01428 0.73001 0.72707 0.72116 1.93494 1.64486 1.58561 1.81240 1.93582 1.45910 1.85845 1.70634 1.59052 1.35842 1.58243 1.30655 1.22710 0.87535 1.01197 0.92006 1.23043 0.86864 0.98217 0.88769 0.90330 1.86419 1.37644 1.45158 1.67564 1.22573 0.98396 0.97196 0.95644 1.20384 0.92527 0.88021 0.89161 1.22380 0.94796 1.02099 1.03251 1.22893 0.95569 0.90123 0.93940 1.86388 1.77039 1.23334 1.50319 0.93716 0.90987 0.92070 0.94289 0.93395 0.92534 0.91410 0.88013 0.77023 0.89774 0.90008 0.91198 0.90548 0.91602 0.93587 0.90473 0.77548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.40 59.85 0.62 2.34 16 2 N -0.99 -20.15 3.23 -123.06 -0.40 -20.55 16 3 C 0.24 5.82 5.45 -5.20 -0.03 5.79 16 4 C -0.54 -13.22 8.38 -34.44 -0.29 -13.51 16 5 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 6 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 7 N -0.89 -24.30 13.29 55.43 0.74 -23.56 16 8 Si 0.89 19.44 29.54 -169.99 -5.02 14.42 16 9 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 S 2.80 55.60 5.89 -107.50 -0.63 54.96 16 13 O -0.99 -19.38 13.27 -57.17 -0.76 -20.14 16 14 O -0.98 -22.62 16.52 -57.17 -0.94 -23.56 16 15 N -1.00 -17.27 3.17 -97.66 -0.31 -17.58 16 16 C 0.09 1.53 6.79 -2.53 -0.02 1.52 16 17 C 0.09 1.37 4.43 -24.59 -0.11 1.26 16 18 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 19 O -0.56 -7.86 13.47 -35.23 -0.47 -8.34 16 20 C -0.10 -1.40 5.50 -24.84 -0.14 -1.53 16 21 C 0.19 2.82 0.66 -130.79 -0.09 2.74 16 22 C -0.17 -2.41 8.01 37.15 0.30 -2.12 16 23 C 0.05 0.75 5.84 37.16 0.22 0.97 16 24 O -0.57 -6.76 12.78 -35.23 -0.45 -7.21 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 27 H 0.06 0.94 5.19 -51.93 -0.27 0.67 16 28 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 29 H 0.05 1.27 7.01 -51.93 -0.36 0.91 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.92 7.11 -51.93 -0.37 1.55 16 33 H 0.38 4.08 9.12 45.56 0.42 4.50 16 34 H 0.08 1.11 7.81 -51.93 -0.41 0.70 16 35 H 0.08 1.14 7.84 -51.93 -0.41 0.73 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.00 7.81 -51.93 -0.41 0.59 16 38 H 0.07 0.98 5.20 -51.93 -0.27 0.71 16 39 H 0.05 0.61 8.13 -51.93 -0.42 0.18 16 40 H 0.08 1.18 5.83 -51.93 -0.30 0.88 16 41 H 0.38 2.79 9.12 45.56 0.42 3.20 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -31.16 338.46 -7.24 -38.40 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.46 Total: 9.05 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 0.37 Total: -1.00 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: 0.03 Total: -61.69 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -2.63 Total: -59.25 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: 55.60 SS G_CDS: -0.63 Total: 54.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.16 -7.24 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414310331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.339 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds