Wall clock time and date at job start Fri Apr 10 2020 17:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00222 * 2 1 4 4 C 1.50699 * 109.46947 * 275.00019 * 3 2 1 5 5 H 1.08005 * 120.00266 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00069 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99877 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00104 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47075 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47113 * 120.00138 * 8 6 4 11 11 H 1.48504 * 109.47080 * 240.00110 * 8 6 4 12 12 S 1.65609 * 119.99875 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40185 * 343.12063 * 12 2 1 14 14 O 1.42100 * 106.39993 * 210.19992 * 12 2 1 15 15 N 1.65602 * 107.21443 * 96.65876 * 12 2 1 16 16 C 1.47424 * 125.64742 * 83.27341 * 15 12 2 17 17 C 1.54906 * 104.83140 * 204.15998 * 16 15 12 18 18 H 1.09000 * 111.00667 * 81.06328 * 17 16 15 19 19 O 1.42903 * 111.00487 * 204.87667 * 17 16 15 20 20 C 1.55153 * 101.61754 * 322.97025 * 17 16 15 21 21 C 1.47017 * 125.64667 * 263.30992 * 15 12 2 22 22 C 1.52994 * 109.88582 * 59.33655 * 21 15 12 23 23 C 1.53002 * 109.88464 * 298.32219 * 21 15 12 24 24 O 1.42898 * 109.47293 * 179.97438 * 23 21 15 25 25 H 1.09000 * 109.46961 * 274.95810 * 1 2 3 26 26 H 1.09000 * 109.47258 * 34.95685 * 1 2 3 27 27 H 1.09002 * 109.47548 * 154.96239 * 1 2 3 28 28 H 1.09002 * 109.47287 * 34.99880 * 3 2 1 29 29 H 1.08997 * 109.47342 * 155.00297 * 3 2 1 30 30 H 0.97000 * 119.99933 * 179.97438 * 7 6 4 31 31 H 1.08998 * 110.36921 * 85.31830 * 16 15 12 32 32 H 1.09003 * 110.46232 * 323.04812 * 16 15 12 33 33 H 0.96698 * 114.00172 * 295.41870 * 19 17 16 34 34 H 1.09000 * 110.72115 * 153.87897 * 20 17 16 35 35 H 1.08993 * 110.72355 * 277.16076 * 20 17 16 36 36 H 1.08999 * 109.47071 * 53.93438 * 22 21 15 37 37 H 1.08995 * 109.47631 * 173.93379 * 22 21 15 38 38 H 1.08997 * 109.47257 * 293.93896 * 22 21 15 39 39 H 1.08996 * 109.47214 * 300.00839 * 23 21 15 40 40 H 1.09006 * 109.46971 * 60.00254 * 23 21 15 41 41 H 0.96700 * 113.99845 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9289 1.1934 -2.2333 6 6 2.9998 2.9507 -1.6664 7 7 3.5017 3.6478 -0.6705 8 14 3.1775 3.5671 -3.4208 9 1 2.5302 2.6071 -4.3507 10 1 2.5260 4.8954 -3.5472 11 1 4.6184 3.6882 -3.7593 12 16 2.2930 -1.4342 0.0006 13 8 1.3639 -2.4337 0.3969 14 8 3.5139 -1.1923 0.6862 15 7 2.6969 -1.7677 -1.5704 16 6 3.8670 -1.2313 -2.2891 17 6 3.4797 -1.3038 -3.7872 18 1 2.8521 -0.4587 -4.0699 19 8 4.6430 -1.3737 -4.6142 20 6 2.6798 -2.6323 -3.8391 21 6 1.9475 -2.6470 -2.4796 22 6 0.5193 -2.1251 -2.6487 23 6 1.9181 -4.0707 -1.9199 24 8 1.1876 -4.9173 -2.8096 25 1 -0.3633 0.0888 1.0238 26 1 -0.3634 0.8422 -0.5888 27 1 -0.3634 -0.9311 -0.4349 28 1 1.6502 2.0043 0.5894 29 1 3.1858 1.1176 0.4342 30 1 3.9652 4.4814 -0.8471 31 1 4.7461 -1.8455 -2.0943 32 1 4.0541 -0.1984 -1.9952 33 1 5.2005 -0.5845 -4.5763 34 1 1.9657 -2.6205 -4.6625 35 1 3.3534 -3.4850 -3.9236 36 1 0.5485 -1.0815 -2.9620 37 1 0.0032 -2.7170 -3.4045 38 1 -0.0114 -2.2048 -1.7000 39 1 2.9377 -4.4425 -1.8190 40 1 1.4344 -4.0672 -0.9431 41 1 1.1286 -5.8372 -2.5174 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414310331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:03 Heat of formation + Delta-G solvation = -193.374790 kcal Electronic energy + Delta-G solvation = -26547.157471 eV Core-core repulsion = 22781.118904 eV Total energy + Delta-G solvation = -3766.038567 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70259 -38.51120 -37.68036 -37.25809 -36.98022 -36.47730 -34.49528 -32.36901 -30.87552 -29.66847 -27.64900 -26.81397 -25.98714 -24.20995 -22.75320 -21.71312 -19.65955 -18.75099 -18.59482 -18.42571 -18.23950 -17.90234 -17.22825 -16.48499 -16.07927 -15.86567 -15.56354 -15.18760 -15.08641 -14.77469 -14.46481 -14.33406 -14.05427 -13.99107 -13.72206 -13.46195 -13.35318 -13.26676 -13.04314 -12.96917 -12.92420 -12.76255 -12.54790 -12.44073 -12.14244 -11.98156 -11.84392 -11.68790 -11.45433 -11.01075 -10.82983 -10.59333 -10.12434 -9.78789 -8.16388 -6.30227 -0.44016 1.42698 1.46367 1.56318 1.82340 2.39916 2.44488 3.12382 3.13763 3.16355 3.29998 3.67429 3.76176 3.91280 4.04723 4.14959 4.20518 4.32402 4.45136 4.60616 4.61283 4.71222 4.75847 4.84982 4.86391 4.94332 5.00445 5.04396 5.13286 5.15733 5.26253 5.37702 5.42075 5.52330 5.75176 5.90949 6.09777 6.79520 6.82562 6.88529 7.39954 8.92192 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.007646 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.173742 B = 3661.051206 C = 4717.078312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.999 5.999 3 C 0.257 3.743 4 C -0.534 4.534 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.930 5.930 8 Si 0.954 3.046 9 H -0.253 1.253 10 H -0.287 1.287 11 H -0.278 1.278 12 S 2.808 3.192 13 O -0.990 6.990 14 O -1.015 7.015 15 N -0.998 5.998 16 C 0.088 3.912 17 C 0.101 3.899 18 H 0.074 0.926 19 O -0.565 6.565 20 C -0.091 4.091 21 C 0.178 3.822 22 C -0.165 4.165 23 C 0.060 3.940 24 O -0.568 6.568 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.020 0.980 29 H 0.015 0.985 30 H 0.265 0.735 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.396 0.604 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 -12.507 -7.063 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.841 5.841 3 C 0.133 3.867 4 C -0.573 4.573 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.569 5.569 8 Si 0.779 3.221 9 H -0.177 1.177 10 H -0.214 1.214 11 H -0.204 1.204 12 S 2.818 3.182 13 O -0.974 6.974 14 O -0.999 6.999 15 N -0.839 5.839 16 C -0.038 4.038 17 C 0.040 3.960 18 H 0.092 0.908 19 O -0.372 6.372 20 C -0.130 4.130 21 C 0.090 3.910 22 C -0.223 4.223 23 C -0.020 4.020 24 O -0.376 6.376 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.246 0.754 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.102 -12.895 -6.617 15.063 hybrid contribution 0.591 1.222 0.008 1.357 sum -3.511 -11.673 -6.609 13.866 Atomic orbital electron populations 1.21563 0.77989 1.03413 1.02139 1.57538 1.15627 1.22091 1.88800 1.18810 0.90590 0.80123 0.97189 1.21798 1.35713 1.06587 0.93167 0.90586 1.25797 0.95028 0.96789 1.01026 1.70080 1.37927 1.15700 1.33227 0.85558 0.78028 0.78400 0.80075 1.17650 1.21372 1.20401 1.00917 0.72254 0.72468 0.72515 1.93495 1.64191 1.58076 1.81679 1.93530 1.47732 1.86337 1.72294 1.58796 1.36294 1.58627 1.30143 1.22760 0.87721 0.99777 0.93497 1.22897 0.87202 0.98663 0.87256 0.90806 1.86399 1.37528 1.46325 1.66978 1.22555 0.98485 0.96682 0.95253 1.20663 0.92759 0.88319 0.89231 1.22369 0.94412 1.02089 1.03426 1.22674 0.96005 0.89956 0.93350 1.86337 1.76606 1.24798 1.49822 0.92514 0.90683 0.90120 0.96198 0.96706 0.92603 0.90745 0.90616 0.75401 0.88261 0.89527 0.91707 0.88790 0.92275 0.92977 0.92038 0.75113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.11 10.40 127.77 1.33 4.44 16 2 N -1.00 -40.71 3.23 -543.24 -1.75 -42.46 16 3 C 0.26 12.64 5.45 85.63 0.47 13.11 16 4 C -0.53 -26.20 8.38 25.60 0.21 -25.99 16 5 H 0.08 3.50 7.81 -2.91 -0.02 3.48 16 6 C 0.01 0.67 5.46 84.66 0.46 1.13 16 7 N -0.93 -52.03 13.29 21.45 0.28 -51.74 16 8 Si 0.95 39.39 29.54 68.60 2.03 41.42 16 9 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 10 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 12 S 2.81 111.69 5.89 -56.49 -0.33 111.35 16 13 O -0.99 -37.85 13.27 -128.00 -1.70 -39.54 16 14 O -1.01 -48.34 16.52 -128.00 -2.12 -50.45 16 15 N -1.00 -33.59 3.17 -462.88 -1.47 -35.06 16 16 C 0.09 2.90 6.79 86.85 0.59 3.49 16 17 C 0.10 2.79 4.43 31.98 0.14 2.93 16 18 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 19 O -0.57 -14.33 13.47 -148.98 -2.01 -16.34 16 20 C -0.09 -2.29 5.50 31.82 0.17 -2.12 16 21 C 0.18 4.96 0.66 3.99 0.00 4.97 16 22 C -0.16 -4.34 8.01 71.98 0.58 -3.77 16 23 C 0.06 1.53 5.84 71.98 0.42 1.95 16 24 O -0.57 -11.73 12.78 -148.98 -1.90 -13.64 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 2.42 8.11 -2.39 -0.02 2.40 16 27 H 0.08 2.34 5.19 -2.39 -0.01 2.32 16 28 H 0.02 1.04 8.11 -2.39 -0.02 1.02 16 29 H 0.01 0.83 7.01 -2.39 -0.02 0.81 16 30 H 0.26 14.05 8.31 -92.71 -0.77 13.27 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.08 2.88 7.11 -2.39 -0.02 2.86 16 33 H 0.40 7.54 9.12 -74.06 -0.68 6.86 16 34 H 0.10 2.23 7.81 -2.39 -0.02 2.21 16 35 H 0.09 2.12 7.84 -2.39 -0.02 2.11 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.09 2.14 7.81 -2.39 -0.02 2.12 16 38 H 0.06 1.62 5.20 -2.39 -0.01 1.61 16 39 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 40 H 0.06 1.77 5.83 -2.38 -0.01 1.76 16 41 H 0.40 4.59 9.12 -74.06 -0.68 3.91 16 Total: -1.00 -66.39 338.46 -4.88 -71.27 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.29 Total: 25.05 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 4.38 Total: 0.15 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -2.94 Total: -129.26 kcal Atomic # 8 Polarization: -112.25 SS G_CDS: -7.72 Total: -119.97 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 16 Polarization: 111.69 SS G_CDS: -0.33 Total: 111.35 kcal Total: -66.39 -4.88 -71.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414310331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.110 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds