Wall clock time and date at job start Fri Apr 10 2020 17:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.50701 * 109.46892 * 274.99996 * 3 2 1 5 5 H 1.08001 * 120.00365 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00124 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99899 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00292 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46838 * 60.00206 * 8 6 4 10 10 H 1.48501 * 109.47258 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47477 * 300.00298 * 8 6 4 12 12 S 1.65599 * 119.99727 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40241 * 156.45875 * 12 2 1 14 14 O 1.42096 * 106.40379 * 23.53497 * 12 2 1 15 15 N 1.65608 * 107.21718 * 269.99659 * 12 2 1 16 16 C 1.47018 * 125.64670 * 90.00175 * 15 12 2 17 17 C 1.54320 * 107.27210 * 181.02466 * 16 15 12 18 18 H 1.08998 * 110.72003 * 263.82662 * 17 16 15 19 19 C 1.52996 * 110.72306 * 140.73408 * 17 16 15 20 20 O 1.42905 * 109.47470 * 66.45260 * 19 17 16 21 21 C 1.55159 * 102.94349 * 22.19183 * 17 16 15 22 22 H 1.09000 * 111.00432 * 206.42652 * 21 17 16 23 23 C 1.52999 * 111.00268 * 82.61068 * 21 17 16 24 24 O 1.42901 * 109.47127 * 175.00294 * 23 21 17 25 25 C 1.47421 * 125.64895 * 269.69755 * 15 12 2 26 26 H 1.09004 * 109.46955 * 270.00024 * 1 2 3 27 27 H 1.09003 * 109.47115 * 30.00071 * 1 2 3 28 28 H 1.08994 * 109.47486 * 150.00176 * 1 2 3 29 29 H 1.08997 * 109.47561 * 34.99712 * 3 2 1 30 30 H 1.09003 * 109.47156 * 155.00554 * 3 2 1 31 31 H 0.96993 * 119.99941 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.88359 * 300.44466 * 16 15 12 33 33 H 1.09004 * 109.88434 * 61.44888 * 16 15 12 34 34 H 1.09001 * 109.47608 * 186.44983 * 19 17 16 35 35 H 1.09004 * 109.47281 * 306.45724 * 19 17 16 36 36 H 0.96693 * 114.00457 * 180.02562 * 20 19 17 37 37 H 1.08998 * 109.47249 * 295.00460 * 23 21 17 38 38 H 1.08999 * 109.47368 * 54.99934 * 23 21 17 39 39 H 0.96697 * 114.00325 * 180.02562 * 24 23 21 40 40 H 1.09005 * 110.36058 * 274.74508 * 25 15 12 41 41 H 1.08997 * 110.36930 * 37.06636 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9289 1.1934 -2.2333 6 6 3.0006 2.9503 -1.6666 7 7 3.5042 3.6464 -0.6708 8 14 3.1796 3.5659 -3.4211 9 1 1.8333 3.7720 -4.0131 10 1 3.9220 4.8520 -3.4211 11 1 3.9251 2.5635 -4.2238 12 16 2.2929 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4112 -2.4063 -0.5454 15 7 2.5381 -1.8594 1.5810 16 6 1.6303 -2.6767 2.3991 17 6 2.2556 -2.7877 3.8056 18 1 2.8225 -3.7135 3.9036 19 6 1.1764 -2.6992 4.8864 20 8 0.3268 -3.8454 4.8063 21 6 3.1992 -1.5574 3.8645 22 1 4.0254 -1.7313 4.5539 23 6 2.4277 -0.2923 4.2457 24 8 3.3425 0.7940 4.4040 25 6 3.7058 -1.4863 2.4000 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6502 2.0043 0.5894 30 1 3.1858 1.1177 0.4342 31 1 3.9683 4.4796 -0.8475 32 1 0.6547 -2.1948 2.4642 33 1 1.5251 -3.6680 1.9583 34 1 1.6478 -2.6644 5.8687 35 1 0.5841 -1.7967 4.7354 36 1 -0.3825 -3.8560 5.4634 37 1 1.7116 -0.0527 3.4596 38 1 1.8962 -0.4593 5.1826 39 1 2.9219 1.6302 4.6469 40 1 4.5205 -2.1933 2.2431 41 1 4.0296 -0.4736 2.1598 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475606798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:15 Heat of formation + Delta-G solvation = -167.405512 kcal Electronic energy + Delta-G solvation = -25550.512393 eV Core-core repulsion = 21785.599938 eV Total energy + Delta-G solvation = -3764.912455 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.60159 -36.78999 -36.57518 -36.09258 -35.45957 -35.11663 -32.41330 -31.98406 -29.65116 -27.75347 -25.70364 -25.49186 -24.98819 -22.30315 -21.68819 -19.60663 -18.67280 -17.90897 -17.28383 -17.04330 -16.80605 -16.27545 -16.13230 -15.42949 -15.03330 -14.61606 -14.48742 -13.89116 -13.61919 -13.42129 -13.36103 -13.03191 -12.82194 -12.50718 -12.27066 -12.15109 -11.95135 -11.60468 -11.46773 -11.25736 -11.18993 -11.14011 -11.12965 -11.04238 -10.69420 -10.57913 -10.48191 -10.18284 -10.01835 -9.91372 -9.75840 -8.78758 -8.41663 -8.04175 -6.04536 -4.08554 1.18733 3.34970 3.38412 3.43328 3.53660 3.79827 4.01549 4.16778 4.41823 4.46531 4.54014 4.79610 4.94755 5.08168 5.12895 5.23409 5.30143 5.32737 5.37965 5.39829 5.58052 5.63704 5.73857 5.82645 5.94654 5.97971 6.02857 6.07062 6.25066 6.40640 6.48679 6.67622 7.23842 7.34023 7.42422 7.62490 7.66121 7.92710 8.22317 8.93330 9.56470 11.03866 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.004953 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.182677 B = 5652.010604 C = 6305.687119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.996 5.996 3 C 0.260 3.740 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.793 3.207 13 O -0.958 6.958 14 O -0.994 6.994 15 N -1.025 6.025 16 C 0.133 3.867 17 C -0.090 4.090 18 H 0.097 0.903 19 C 0.082 3.918 20 O -0.571 6.571 21 C -0.091 4.091 22 H 0.097 0.903 23 C 0.081 3.919 24 O -0.568 6.568 25 C 0.130 3.870 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.264 0.736 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.379 0.621 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.383 0.617 40 H 0.069 0.931 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -9.724 15.377 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.838 5.838 3 C 0.138 3.862 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.802 3.198 13 O -0.941 6.941 14 O -0.978 6.978 15 N -0.864 5.864 16 C 0.007 3.993 17 C -0.110 4.110 18 H 0.115 0.885 19 C 0.004 3.996 20 O -0.377 6.377 21 C -0.111 4.111 22 H 0.116 0.884 23 C 0.003 3.997 24 O -0.373 6.373 25 C 0.004 3.996 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.226 0.774 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.575 -10.621 13.895 18.078 hybrid contribution -0.817 1.297 0.035 1.533 sum -5.393 -9.324 13.930 17.609 Atomic orbital electron populations 1.21324 0.80286 1.03434 0.99946 1.57716 1.14248 1.23464 1.88408 1.19024 0.90932 0.78688 0.97579 1.21455 1.36240 1.06333 0.92915 0.92294 1.24919 0.95064 0.96487 0.97444 1.69910 1.37177 1.15345 1.30946 0.86585 0.78280 0.77999 0.84753 1.20212 1.21156 1.19981 1.01657 0.73454 0.72723 0.71939 1.93629 1.40559 1.84889 1.75055 1.93516 1.67449 1.60518 1.76303 1.59479 1.30016 1.65641 1.31244 1.21576 0.92409 0.95427 0.89858 1.22227 0.95714 0.99006 0.94024 0.88509 1.22276 0.91561 0.88109 0.97666 1.86504 1.45988 1.44690 1.60480 1.22353 0.98235 0.92685 0.97819 0.88443 1.22159 0.91602 0.86860 0.99059 1.86460 1.36912 1.20859 1.93115 1.21991 0.87604 1.01793 0.88169 0.94624 0.90395 0.91635 0.94956 0.94445 0.92666 0.91958 0.91044 0.93102 0.92984 0.77384 0.92796 0.93706 0.77015 0.91264 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.68 59.85 0.64 2.33 16 2 N -1.00 -21.15 3.23 -123.05 -0.40 -21.55 16 3 C 0.26 6.56 5.08 -5.19 -0.03 6.53 16 4 C -0.53 -15.05 9.38 -34.44 -0.32 -15.37 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 S 2.79 58.47 6.31 -107.50 -0.68 57.79 16 13 O -0.96 -23.86 16.69 -57.17 -0.95 -24.82 16 14 O -0.99 -21.70 16.32 -57.17 -0.93 -22.64 16 15 N -1.03 -16.73 3.69 -111.30 -0.41 -17.14 16 16 C 0.13 1.78 6.18 -3.07 -0.02 1.76 16 17 C -0.09 -0.93 3.08 -88.79 -0.27 -1.21 16 18 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 19 C 0.08 0.67 5.28 37.16 0.20 0.86 16 20 O -0.57 -4.91 13.50 -35.23 -0.48 -5.38 16 21 C -0.09 -1.03 3.19 -88.35 -0.28 -1.31 16 22 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 23 C 0.08 0.90 5.51 37.16 0.20 1.10 16 24 O -0.57 -7.18 13.50 -35.23 -0.48 -7.66 16 25 C 0.13 1.93 6.43 -2.41 -0.02 1.92 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 1.10 7.02 -51.93 -0.36 0.74 16 29 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 30 H 0.04 1.01 7.61 -51.93 -0.40 0.62 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.06 0.79 7.77 -51.93 -0.40 0.38 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.40 6.60 -51.93 -0.34 0.05 16 36 H 0.38 1.51 9.12 45.56 0.42 1.92 16 37 H 0.05 0.67 7.93 -51.93 -0.41 0.26 16 38 H 0.04 0.38 6.43 -51.93 -0.33 0.04 16 39 H 0.38 3.43 9.12 45.56 0.42 3.84 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.53 7.93 -51.93 -0.41 1.12 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -36.40 348.35 -8.11 -44.51 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.75 Total: 1.70 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 0.00 Total: -1.68 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.07 Total: -64.07 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -2.84 Total: -60.50 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 58.47 SS G_CDS: -0.68 Total: 57.79 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.40 -8.11 -44.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475606798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.894 kcal (2) G-P(sol) polarization free energy of solvation -36.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds