Wall clock time and date at job start Fri Apr 10 2020 17:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.50701 * 109.46892 * 274.99996 * 3 2 1 5 5 H 1.08001 * 120.00365 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00124 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99899 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00292 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46838 * 60.00206 * 8 6 4 10 10 H 1.48501 * 109.47258 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47477 * 300.00298 * 8 6 4 12 12 S 1.65599 * 119.99727 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40241 * 156.45875 * 12 2 1 14 14 O 1.42096 * 106.40379 * 23.53497 * 12 2 1 15 15 N 1.65608 * 107.21718 * 269.99659 * 12 2 1 16 16 C 1.47018 * 125.64670 * 90.00175 * 15 12 2 17 17 C 1.54320 * 107.27210 * 181.02466 * 16 15 12 18 18 H 1.08998 * 110.72003 * 263.82662 * 17 16 15 19 19 C 1.52996 * 110.72306 * 140.73408 * 17 16 15 20 20 O 1.42905 * 109.47470 * 66.45260 * 19 17 16 21 21 C 1.55159 * 102.94349 * 22.19183 * 17 16 15 22 22 H 1.09000 * 111.00432 * 206.42652 * 21 17 16 23 23 C 1.52999 * 111.00268 * 82.61068 * 21 17 16 24 24 O 1.42901 * 109.47127 * 175.00294 * 23 21 17 25 25 C 1.47421 * 125.64895 * 269.69755 * 15 12 2 26 26 H 1.09004 * 109.46955 * 270.00024 * 1 2 3 27 27 H 1.09003 * 109.47115 * 30.00071 * 1 2 3 28 28 H 1.08994 * 109.47486 * 150.00176 * 1 2 3 29 29 H 1.08997 * 109.47561 * 34.99712 * 3 2 1 30 30 H 1.09003 * 109.47156 * 155.00554 * 3 2 1 31 31 H 0.96993 * 119.99941 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.88359 * 300.44466 * 16 15 12 33 33 H 1.09004 * 109.88434 * 61.44888 * 16 15 12 34 34 H 1.09001 * 109.47608 * 186.44983 * 19 17 16 35 35 H 1.09004 * 109.47281 * 306.45724 * 19 17 16 36 36 H 0.96693 * 114.00457 * 180.02562 * 20 19 17 37 37 H 1.08998 * 109.47249 * 295.00460 * 23 21 17 38 38 H 1.08999 * 109.47368 * 54.99934 * 23 21 17 39 39 H 0.96697 * 114.00325 * 180.02562 * 24 23 21 40 40 H 1.09005 * 110.36058 * 274.74508 * 25 15 12 41 41 H 1.08997 * 110.36930 * 37.06636 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9289 1.1934 -2.2333 6 6 3.0006 2.9503 -1.6666 7 7 3.5042 3.6464 -0.6708 8 14 3.1796 3.5659 -3.4211 9 1 1.8333 3.7720 -4.0131 10 1 3.9220 4.8520 -3.4211 11 1 3.9251 2.5635 -4.2238 12 16 2.2929 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4112 -2.4063 -0.5454 15 7 2.5381 -1.8594 1.5810 16 6 1.6303 -2.6767 2.3991 17 6 2.2556 -2.7877 3.8056 18 1 2.8225 -3.7135 3.9036 19 6 1.1764 -2.6992 4.8864 20 8 0.3268 -3.8454 4.8063 21 6 3.1992 -1.5574 3.8645 22 1 4.0254 -1.7313 4.5539 23 6 2.4277 -0.2923 4.2457 24 8 3.3425 0.7940 4.4040 25 6 3.7058 -1.4863 2.4000 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6502 2.0043 0.5894 30 1 3.1858 1.1177 0.4342 31 1 3.9683 4.4796 -0.8475 32 1 0.6547 -2.1948 2.4642 33 1 1.5251 -3.6680 1.9583 34 1 1.6478 -2.6644 5.8687 35 1 0.5841 -1.7967 4.7354 36 1 -0.3825 -3.8560 5.4634 37 1 1.7116 -0.0527 3.4596 38 1 1.8962 -0.4593 5.1826 39 1 2.9219 1.6302 4.6469 40 1 4.5205 -2.1933 2.2431 41 1 4.0296 -0.4736 2.1598 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475606798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:14 Heat of formation + Delta-G solvation = -200.718218 kcal Electronic energy + Delta-G solvation = -25551.956940 eV Core-core repulsion = 21785.599938 eV Total energy + Delta-G solvation = -3766.357002 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56486 -38.36912 -37.46401 -37.24993 -37.03114 -36.91371 -34.52087 -33.01962 -30.63656 -29.68541 -26.88117 -26.67241 -26.25941 -24.23472 -22.78398 -20.49426 -20.07899 -19.15697 -18.69668 -18.47843 -18.16556 -17.76048 -17.34495 -16.97809 -16.46041 -15.88010 -15.47025 -15.27991 -15.01385 -14.82859 -14.51431 -14.28896 -14.05250 -13.96879 -13.94615 -13.50097 -13.35782 -13.22658 -13.06856 -12.96932 -12.81273 -12.58262 -12.50894 -12.40094 -12.19394 -12.08036 -11.98034 -11.79096 -11.39107 -10.80848 -10.76861 -10.60916 -10.07279 -9.80291 -8.21373 -6.33685 -0.45069 1.37751 1.41629 1.48685 1.99090 2.38472 2.53567 2.99305 3.09263 3.28019 3.35677 3.43890 3.85444 4.05086 4.09570 4.22769 4.27973 4.41478 4.46250 4.47902 4.59973 4.65918 4.69432 4.74065 4.77865 4.80027 4.94654 5.00832 5.05649 5.09754 5.14959 5.22706 5.35504 5.49164 5.68146 5.91761 6.08914 6.73595 6.91876 7.00093 7.34995 8.85844 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.004953 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.182677 B = 5652.010604 C = 6305.687119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.002 6.002 3 C 0.279 3.721 4 C -0.554 4.554 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.955 3.045 9 H -0.263 1.263 10 H -0.274 1.274 11 H -0.279 1.279 12 S 2.806 3.194 13 O -1.006 7.006 14 O -1.006 7.006 15 N -1.019 6.019 16 C 0.123 3.877 17 C -0.079 4.079 18 H 0.105 0.895 19 C 0.085 3.915 20 O -0.591 6.591 21 C -0.081 4.081 22 H 0.118 0.882 23 C 0.078 3.922 24 O -0.592 6.592 25 C 0.119 3.881 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.012 0.988 31 H 0.268 0.732 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.036 0.964 38 H 0.083 0.917 39 H 0.396 0.604 40 H 0.077 0.923 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 -10.223 17.012 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.844 5.844 3 C 0.155 3.845 4 C -0.593 4.593 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.187 1.187 10 H -0.199 1.199 11 H -0.205 1.205 12 S 2.816 3.184 13 O -0.990 6.990 14 O -0.990 6.990 15 N -0.861 5.861 16 C -0.002 4.002 17 C -0.099 4.099 18 H 0.123 0.877 19 C 0.007 3.993 20 O -0.400 6.400 21 C -0.101 4.101 22 H 0.136 0.864 23 C 0.001 3.999 24 O -0.400 6.400 25 C -0.006 4.006 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.250 0.750 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.245 0.755 40 H 0.095 0.905 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.730 -11.121 15.539 19.949 hybrid contribution -0.501 1.385 -0.406 1.528 sum -6.232 -9.736 15.133 19.043 Atomic orbital electron populations 1.21553 0.78052 1.03530 1.02356 1.57594 1.15752 1.22013 1.89037 1.18544 0.90099 0.80022 0.95803 1.21793 1.36653 1.06770 0.94101 0.93233 1.25722 0.94646 0.96672 1.01453 1.69999 1.37502 1.15703 1.32765 0.85661 0.78857 0.77601 0.79920 1.18744 1.19876 1.20506 1.00924 0.72289 0.72417 0.72760 1.93559 1.42872 1.85513 1.77081 1.93487 1.67487 1.60590 1.77419 1.59035 1.31207 1.65663 1.30194 1.21890 0.92529 0.94542 0.91193 1.22203 0.96267 0.98719 0.92761 0.87686 1.22245 0.91117 0.88312 0.97621 1.86448 1.46929 1.44833 1.61782 1.22339 0.99123 0.93473 0.95154 0.86437 1.22273 0.91124 0.86224 1.00284 1.86421 1.38214 1.22080 1.93301 1.22176 0.87563 1.00193 0.90628 0.91041 0.90862 0.90946 0.95346 0.97020 0.92312 0.91025 0.91556 0.90617 0.92234 0.75038 0.94582 0.89951 0.75487 0.90476 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.11 10.68 127.77 1.36 4.47 16 2 N -1.00 -43.26 3.23 -543.22 -1.75 -45.01 16 3 C 0.28 14.51 5.08 85.63 0.43 14.95 16 4 C -0.55 -32.16 9.38 25.60 0.24 -31.92 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.02 0.86 5.46 84.65 0.46 1.33 16 7 N -0.92 -54.40 13.29 21.45 0.28 -54.12 16 8 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 9 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 S 2.81 120.16 6.31 -56.49 -0.36 119.81 16 13 O -1.01 -52.39 16.69 -128.00 -2.14 -54.53 16 14 O -1.01 -44.17 16.32 -128.00 -2.09 -46.26 16 15 N -1.02 -33.29 3.69 -506.03 -1.87 -35.16 16 16 C 0.12 3.10 6.18 86.73 0.54 3.64 16 17 C -0.08 -1.43 3.08 -9.61 -0.03 -1.46 16 18 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 19 C 0.08 1.05 5.28 71.98 0.38 1.43 16 20 O -0.59 -8.12 13.50 -148.98 -2.01 -10.13 16 21 C -0.08 -1.67 3.19 -9.32 -0.03 -1.70 16 22 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 23 C 0.08 1.58 5.51 71.98 0.40 1.97 16 24 O -0.59 -14.42 13.50 -148.98 -2.01 -16.43 16 25 C 0.12 3.58 6.43 86.93 0.56 4.14 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 2.57 8.07 -2.39 -0.02 2.55 16 28 H 0.07 2.38 7.02 -2.39 -0.02 2.36 16 29 H 0.03 1.48 8.11 -2.39 -0.02 1.46 16 30 H 0.01 0.67 7.61 -2.39 -0.02 0.65 16 31 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.07 1.67 7.77 -2.39 -0.02 1.65 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.73 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.66 6.60 -2.39 -0.02 0.64 16 36 H 0.40 1.76 9.12 -74.06 -0.68 1.09 16 37 H 0.04 0.85 7.93 -2.39 -0.02 0.83 16 38 H 0.08 1.06 6.43 -2.39 -0.02 1.04 16 39 H 0.40 6.77 9.12 -74.06 -0.68 6.10 16 40 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 Total: -1.00 -79.69 348.35 -5.90 -85.60 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -0.30 Total: 12.08 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 4.31 Total: -3.16 kcal Atomic # 7 Polarization: -130.95 SS G_CDS: -3.34 Total: -134.28 kcal Atomic # 8 Polarization: -119.10 SS G_CDS: -8.25 Total: -127.35 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 120.16 SS G_CDS: -0.36 Total: 119.81 kcal Total: -79.69 -5.90 -85.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475606798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.122 kcal (2) G-P(sol) polarization free energy of solvation -79.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds