Wall clock time and date at job start Fri Apr 10 2020 17:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46986 * 230.05115 * 3 2 1 5 5 C 1.37090 * 120.00249 * 274.17626 * 4 3 2 6 6 H 1.07998 * 120.00221 * 51.03434 * 5 4 3 7 7 C 1.38952 * 119.99731 * 231.03544 * 5 4 3 8 8 N 1.31417 * 119.99914 * 200.07706 * 7 5 4 9 9 Si 1.86799 * 120.00185 * 20.07870 * 7 5 4 10 10 H 1.48502 * 109.47213 * 87.66587 * 9 7 5 11 11 H 1.48506 * 109.47145 * 207.66313 * 9 7 5 12 12 H 1.48497 * 109.47203 * 327.66121 * 9 7 5 13 13 C 1.34781 * 119.99479 * 94.17531 * 4 3 2 14 14 O 1.21293 * 120.00596 * 3.51111 * 13 4 3 15 15 C 1.50703 * 119.99652 * 183.51066 * 13 4 3 16 16 H 1.09001 * 109.40181 * 308.19087 * 15 13 4 17 17 C 1.53069 * 109.39904 * 188.36829 * 15 13 4 18 18 C 1.53352 * 108.42090 * 191.05640 * 17 15 13 19 19 C 1.52914 * 108.67514 * 67.52979 * 18 17 15 20 20 N 1.45751 * 110.48847 * 309.24354 * 19 18 17 21 21 C 1.46500 * 117.94949 * 199.07711 * 20 19 18 22 22 C 1.50698 * 109.47190 * 89.99848 * 21 20 19 23 23 O 1.20823 * 119.99801 * 0.02562 * 22 21 20 24 24 O 1.34232 * 119.99919 * 180.02562 * 22 21 20 25 25 C 1.33359 * 124.10518 * 19.35854 * 20 19 18 26 26 O 1.21275 * 118.24315 * 177.49989 * 25 20 19 27 27 H 4.40643 * 5.51419 * 179.97438 * 4 1 2 28 28 H 1.08999 * 109.47265 * 110.04979 * 3 2 1 29 29 H 1.08997 * 109.47138 * 350.05207 * 3 2 1 30 30 H 0.96996 * 119.99829 * 179.97438 * 8 7 5 31 31 H 1.08991 * 109.67898 * 71.32179 * 17 15 13 32 32 H 1.08998 * 109.67432 * 310.78066 * 17 15 13 33 33 H 1.08997 * 109.60495 * 307.76868 * 18 17 15 34 34 H 1.09006 * 109.59712 * 187.28084 * 18 17 15 35 35 H 1.09002 * 109.30035 * 188.93500 * 19 18 17 36 36 H 1.09001 * 109.13898 * 69.45318 * 19 18 17 37 37 H 1.09007 * 109.46845 * 329.99963 * 21 20 19 38 38 H 1.09003 * 109.47556 * 210.00315 * 21 20 19 39 39 H 0.96701 * 116.99930 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8878 1.0589 5 6 3.2803 2.2290 0.8161 6 1 2.4642 2.7927 0.3888 7 6 4.4787 2.8633 1.1199 8 7 4.5120 4.1685 1.2688 9 14 6.0425 1.8606 1.3165 10 1 6.6948 1.6961 -0.0073 11 1 6.9684 2.5636 2.2406 12 1 5.7075 0.5251 1.8728 13 6 3.4388 0.3851 2.2717 14 8 3.3703 -0.8099 2.4677 15 6 3.8650 1.3080 3.3843 16 1 4.6761 1.9466 3.0344 17 6 4.3492 0.4781 4.5758 18 6 4.5121 1.4110 5.7820 19 6 3.1292 1.9031 6.2107 20 7 2.3991 2.4336 5.0662 21 6 1.2635 3.3214 5.3278 22 6 1.7439 4.7487 5.3831 23 8 2.9148 4.9987 5.2203 24 8 0.8712 5.7422 5.6133 25 6 2.6967 2.1573 3.7959 26 8 1.9891 2.6207 2.9268 27 1 -1.0502 0.0000 -0.0003 28 1 3.0092 0.3531 -0.9654 29 1 3.0098 -1.0114 0.1775 30 1 5.3485 4.6112 1.4812 31 1 5.3073 0.0168 4.3367 32 1 3.6165 -0.2952 4.8065 33 1 5.1334 2.2625 5.5045 34 1 4.9780 0.8677 6.6042 35 1 3.2419 2.6861 6.9605 36 1 2.5710 1.0710 6.6398 37 1 0.8059 3.0548 6.2805 38 1 0.5285 3.2161 4.5297 39 1 1.2263 6.6412 5.6395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588395266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:21 Heat of formation + Delta-G solvation = -65.724664 kcal Electronic energy + Delta-G solvation = -27403.188753 eV Core-core repulsion = 23507.241560 eV Total energy + Delta-G solvation = -3895.947193 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71609 -39.67753 -38.33010 -36.04677 -35.79933 -34.93250 -33.81472 -32.66817 -31.41766 -29.67260 -28.09963 -26.93466 -24.76402 -23.78690 -22.53927 -21.20658 -19.83885 -18.27056 -18.11610 -17.80214 -17.28155 -16.65947 -16.57747 -16.02104 -15.41438 -15.34741 -14.99026 -14.49038 -14.09225 -13.95297 -13.53024 -13.49634 -13.12879 -12.83768 -12.66662 -12.64225 -12.30886 -12.11062 -11.77330 -11.62298 -11.23723 -11.01453 -10.98747 -10.91117 -10.77442 -10.41354 -10.25897 -9.97346 -9.87922 -9.45224 -9.20669 -8.70871 -8.67348 -8.40445 -7.68097 -6.33972 -3.99053 2.49376 2.84599 2.97040 3.17150 3.21956 3.26338 3.43960 3.54972 3.68445 3.77057 4.11580 4.55321 4.91245 4.93007 4.97015 5.12813 5.15315 5.17333 5.32473 5.46312 5.57659 5.60095 5.75469 5.86220 5.91931 6.06759 6.12199 6.28017 6.31292 6.37273 6.58465 6.59711 6.67866 6.72000 7.70168 7.78518 7.83482 8.14201 8.30643 8.64607 8.89606 8.96486 9.29202 9.66941 10.75278 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.007044 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.030652 B = 3974.149251 C = 4235.997357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.162 4.162 3 C 0.207 3.793 4 N -0.453 5.453 5 C -0.306 4.306 6 H 0.099 0.901 7 C 0.066 3.934 8 N -0.845 5.845 9 Si 0.833 3.167 10 H -0.272 1.272 11 H -0.276 1.276 12 H -0.254 1.254 13 C 0.509 3.491 14 O -0.588 6.588 15 C -0.104 4.104 16 H 0.119 0.881 17 C -0.110 4.110 18 C -0.136 4.136 19 C 0.120 3.880 20 N -0.603 5.603 21 C 0.124 3.876 22 C 0.457 3.543 23 O -0.494 6.494 24 O -0.523 6.523 25 C 0.532 3.468 26 O -0.470 6.470 27 H 0.209 0.791 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.272 0.728 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.128 0.872 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 -1.857 10.426 11.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.164 4.164 3 C 0.085 3.915 4 N -0.173 5.173 5 C -0.434 4.434 6 H 0.117 0.883 7 C -0.141 4.141 8 N -0.480 5.480 9 Si 0.658 3.342 10 H -0.198 1.198 11 H -0.201 1.201 12 H -0.179 1.179 13 C 0.297 3.703 14 O -0.472 6.472 15 C -0.128 4.128 16 H 0.136 0.864 17 C -0.148 4.148 18 C -0.174 4.174 19 C -0.003 4.003 20 N -0.340 5.340 21 C -0.001 4.001 22 C 0.296 3.704 23 O -0.380 6.380 24 O -0.335 6.335 25 C 0.318 3.682 26 O -0.339 6.339 27 H 0.226 0.774 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -3.654 -2.347 9.934 10.841 hybrid contribution 1.188 0.666 0.136 1.369 sum -2.466 -1.680 10.069 10.502 Atomic orbital electron populations 1.24624 0.95659 1.02817 1.02025 1.23838 0.95096 0.98468 0.98954 1.18508 0.83579 0.96211 0.93214 1.43520 1.58186 1.08359 1.07198 1.18775 0.99300 0.80528 1.44838 0.88344 1.25498 0.97391 0.95206 0.95978 1.69758 1.27124 1.08250 1.42861 0.87591 0.85061 0.82135 0.79442 1.19794 1.20110 1.17886 1.19842 0.79496 0.87586 0.83329 1.90531 1.58214 1.15916 1.82518 1.21308 0.98219 0.97421 0.95854 0.86400 1.21590 1.02838 0.97693 0.92723 1.21897 0.96328 1.00267 0.98895 1.21349 0.92905 0.98171 0.87870 1.47186 1.32414 1.47811 1.06626 1.20710 0.91045 0.82938 1.05432 1.24275 0.84552 0.89050 0.72512 1.90761 1.18992 1.84433 1.43772 1.84502 1.44743 1.19932 1.84321 1.19526 0.86208 0.81183 0.81244 1.90853 1.47458 1.49096 1.46535 0.77358 0.88541 0.89017 0.91738 0.90835 0.89893 0.90804 0.89681 0.91284 0.91669 0.86828 0.85400 0.73560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.42 19.25 29.55 0.57 -3.85 16 2 C -0.16 -3.48 13.65 -37.12 -0.51 -3.99 16 3 C 0.21 4.52 5.93 -6.83 -0.04 4.48 16 4 N -0.45 -11.41 1.84 -117.93 -0.22 -11.62 16 5 C -0.31 -8.38 6.52 -14.94 -0.10 -8.47 16 6 H 0.10 3.01 8.06 -52.49 -0.42 2.59 16 7 C 0.07 1.79 4.07 -17.46 -0.07 1.72 16 8 N -0.84 -24.31 13.96 55.50 0.77 -23.54 16 9 Si 0.83 20.15 24.91 -169.99 -4.23 15.91 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.25 -6.11 5.35 56.52 0.30 -5.81 16 13 C 0.51 12.68 4.41 -10.98 -0.05 12.63 16 14 O -0.59 -15.01 15.24 5.55 0.08 -14.93 16 15 C -0.10 -2.38 1.33 -93.13 -0.12 -2.50 16 16 H 0.12 2.90 2.93 -51.93 -0.15 2.75 16 17 C -0.11 -1.99 4.87 -26.51 -0.13 -2.12 16 18 C -0.14 -1.94 6.02 -26.59 -0.16 -2.10 16 19 C 0.12 1.61 6.32 -4.49 -0.03 1.58 16 20 N -0.60 -10.56 2.30 -176.33 -0.41 -10.96 16 21 C 0.12 1.83 5.81 -5.19 -0.03 1.80 16 22 C 0.46 7.42 8.38 36.00 0.30 7.72 16 23 O -0.49 -10.10 17.18 -18.75 -0.32 -10.42 16 24 O -0.52 -6.64 13.42 -39.26 -0.53 -7.17 16 25 C 0.53 11.95 6.91 -11.86 -0.08 11.87 16 26 O -0.47 -12.17 12.66 5.56 0.07 -12.10 16 27 H 0.21 3.02 7.80 -54.08 -0.42 2.60 16 28 H 0.10 1.91 8.07 -51.93 -0.42 1.49 16 29 H 0.09 1.91 7.26 -51.93 -0.38 1.54 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.48 7.59 -51.93 -0.39 1.08 16 33 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.11 1.12 8.02 -51.93 -0.42 0.71 16 38 H 0.13 2.03 7.13 -51.93 -0.37 1.66 16 39 H 0.41 3.61 9.10 45.56 0.41 4.03 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -36.69 329.47 -4.16 -40.85 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -3.90 Total: 10.25 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: -0.45 Total: 18.76 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.15 Total: -46.12 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.69 Total: -44.62 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.23 Total: 15.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.69 -4.16 -40.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588395266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.872 kcal (2) G-P(sol) polarization free energy of solvation -36.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds