Wall clock time and date at job start Fri Apr 10 2020 17:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46986 * 230.05115 * 3 2 1 5 5 C 1.37090 * 120.00249 * 274.17626 * 4 3 2 6 6 H 1.07998 * 120.00221 * 51.03434 * 5 4 3 7 7 C 1.38952 * 119.99731 * 231.03544 * 5 4 3 8 8 N 1.31417 * 119.99914 * 200.07706 * 7 5 4 9 9 Si 1.86799 * 120.00185 * 20.07870 * 7 5 4 10 10 H 1.48502 * 109.47213 * 87.66587 * 9 7 5 11 11 H 1.48506 * 109.47145 * 207.66313 * 9 7 5 12 12 H 1.48497 * 109.47203 * 327.66121 * 9 7 5 13 13 C 1.34781 * 119.99479 * 94.17531 * 4 3 2 14 14 O 1.21293 * 120.00596 * 3.51111 * 13 4 3 15 15 C 1.50703 * 119.99652 * 183.51066 * 13 4 3 16 16 H 1.09001 * 109.40181 * 308.19087 * 15 13 4 17 17 C 1.53069 * 109.39904 * 188.36829 * 15 13 4 18 18 C 1.53352 * 108.42090 * 191.05640 * 17 15 13 19 19 C 1.52914 * 108.67514 * 67.52979 * 18 17 15 20 20 N 1.45751 * 110.48847 * 309.24354 * 19 18 17 21 21 C 1.46500 * 117.94949 * 199.07711 * 20 19 18 22 22 C 1.50698 * 109.47190 * 89.99848 * 21 20 19 23 23 O 1.20823 * 119.99801 * 0.02562 * 22 21 20 24 24 O 1.34232 * 119.99919 * 180.02562 * 22 21 20 25 25 C 1.33359 * 124.10518 * 19.35854 * 20 19 18 26 26 O 1.21275 * 118.24315 * 177.49989 * 25 20 19 27 27 H 4.40643 * 5.51419 * 179.97438 * 4 1 2 28 28 H 1.08999 * 109.47265 * 110.04979 * 3 2 1 29 29 H 1.08997 * 109.47138 * 350.05207 * 3 2 1 30 30 H 0.96996 * 119.99829 * 179.97438 * 8 7 5 31 31 H 1.08991 * 109.67898 * 71.32179 * 17 15 13 32 32 H 1.08998 * 109.67432 * 310.78066 * 17 15 13 33 33 H 1.08997 * 109.60495 * 307.76868 * 18 17 15 34 34 H 1.09006 * 109.59712 * 187.28084 * 18 17 15 35 35 H 1.09002 * 109.30035 * 188.93500 * 19 18 17 36 36 H 1.09001 * 109.13898 * 69.45318 * 19 18 17 37 37 H 1.09007 * 109.46845 * 329.99963 * 21 20 19 38 38 H 1.09003 * 109.47556 * 210.00315 * 21 20 19 39 39 H 0.96701 * 116.99930 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8878 1.0589 5 6 3.2803 2.2290 0.8161 6 1 2.4642 2.7927 0.3888 7 6 4.4787 2.8633 1.1199 8 7 4.5120 4.1685 1.2688 9 14 6.0425 1.8606 1.3165 10 1 6.6948 1.6961 -0.0073 11 1 6.9684 2.5636 2.2406 12 1 5.7075 0.5251 1.8728 13 6 3.4388 0.3851 2.2717 14 8 3.3703 -0.8099 2.4677 15 6 3.8650 1.3080 3.3843 16 1 4.6761 1.9466 3.0344 17 6 4.3492 0.4781 4.5758 18 6 4.5121 1.4110 5.7820 19 6 3.1292 1.9031 6.2107 20 7 2.3991 2.4336 5.0662 21 6 1.2635 3.3214 5.3278 22 6 1.7439 4.7487 5.3831 23 8 2.9148 4.9987 5.2203 24 8 0.8712 5.7422 5.6133 25 6 2.6967 2.1573 3.7959 26 8 1.9891 2.6207 2.9268 27 1 -1.0502 0.0000 -0.0003 28 1 3.0092 0.3531 -0.9654 29 1 3.0098 -1.0114 0.1775 30 1 5.3485 4.6112 1.4812 31 1 5.3073 0.0168 4.3367 32 1 3.6165 -0.2952 4.8065 33 1 5.1334 2.2625 5.5045 34 1 4.9780 0.8677 6.6042 35 1 3.2419 2.6861 6.9605 36 1 2.5710 1.0710 6.6398 37 1 0.8059 3.0548 6.2805 38 1 0.5285 3.2161 4.5297 39 1 1.2263 6.6412 5.6395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588395266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:20 Heat of formation + Delta-G solvation = -93.432945 kcal Electronic energy + Delta-G solvation = -27404.390275 eV Core-core repulsion = 23507.241560 eV Total energy + Delta-G solvation = -3897.148715 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.25628 -41.13461 -39.98809 -37.60511 -37.07534 -36.74441 -35.37282 -34.40246 -33.29652 -31.12821 -29.39383 -28.63933 -26.58079 -25.40776 -23.91129 -22.51415 -21.62398 -19.90205 -19.72738 -19.08692 -18.94269 -18.28413 -17.90826 -17.47078 -17.11537 -16.91125 -16.61866 -16.17602 -15.79198 -15.43438 -15.07375 -14.99680 -14.80365 -14.46011 -14.34713 -14.00085 -13.92079 -13.65409 -13.35215 -13.21870 -12.83873 -12.51009 -12.50401 -12.34561 -12.22263 -12.03613 -11.79520 -11.63274 -11.58600 -11.17452 -10.99474 -10.66182 -10.43537 -9.77103 -9.69593 -8.44831 -6.12465 1.06298 1.22162 1.23131 1.26878 1.47662 1.52573 1.80945 1.94971 2.06759 2.10560 2.41998 2.78616 2.96787 3.58092 3.66743 3.67650 3.78682 3.84791 4.15058 4.19625 4.27210 4.39387 4.42048 4.51984 4.55732 4.62041 4.65930 4.83321 4.97529 4.99199 5.09527 5.27828 5.42563 5.63561 5.69841 5.76016 6.37033 6.43555 6.73333 6.90602 6.99533 7.26263 7.29959 7.66405 8.68059 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.007044 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.030652 B = 3974.149251 C = 4235.997357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.224 4.224 3 C 0.203 3.797 4 N -0.463 5.463 5 C -0.294 4.294 6 H 0.052 0.948 7 C 0.034 3.966 8 N -0.886 5.886 9 Si 0.891 3.109 10 H -0.267 1.267 11 H -0.266 1.266 12 H -0.254 1.254 13 C 0.503 3.497 14 O -0.598 6.598 15 C -0.115 4.115 16 H 0.097 0.903 17 C -0.107 4.107 18 C -0.131 4.131 19 C 0.109 3.891 20 N -0.599 5.599 21 C 0.119 3.881 22 C 0.461 3.539 23 O -0.544 6.544 24 O -0.510 6.510 25 C 0.525 3.475 26 O -0.523 6.523 27 H 0.252 0.748 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.273 0.727 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.132 0.868 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.173 0.827 38 H 0.114 0.886 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 -3.065 12.993 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.225 4.225 3 C 0.081 3.919 4 N -0.182 5.182 5 C -0.422 4.422 6 H 0.069 0.931 7 C -0.169 4.169 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.192 1.192 11 H -0.191 1.191 12 H -0.178 1.178 13 C 0.292 3.708 14 O -0.484 6.484 15 C -0.139 4.139 16 H 0.114 0.886 17 C -0.145 4.145 18 C -0.168 4.168 19 C -0.012 4.012 20 N -0.335 5.335 21 C -0.005 4.005 22 C 0.303 3.697 23 O -0.434 6.434 24 O -0.323 6.323 25 C 0.312 3.688 26 O -0.397 6.397 27 H 0.269 0.731 28 H 0.125 0.875 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.191 0.809 38 H 0.132 0.868 39 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -4.153 -3.553 12.549 13.688 hybrid contribution 1.126 1.071 -0.619 1.673 sum -3.027 -2.481 11.930 12.556 Atomic orbital electron populations 1.25642 0.96615 1.00052 0.99236 1.24060 0.95812 1.01046 1.01567 1.18595 0.84531 0.95870 0.92874 1.43618 1.58486 1.07830 1.08277 1.18233 0.98080 0.81415 1.44501 0.93058 1.25909 0.99777 0.95764 0.95454 1.69873 1.27768 1.09926 1.44747 0.86680 0.81552 0.80691 0.79648 1.19229 1.19109 1.17801 1.20311 0.78905 0.87880 0.83692 1.90498 1.58776 1.16321 1.82757 1.21396 0.97975 0.97559 0.96965 0.88606 1.21649 1.02666 0.97859 0.92361 1.21948 0.97087 0.99165 0.98616 1.21786 0.92472 1.00243 0.86653 1.47190 1.32929 1.47290 1.06046 1.21063 0.89783 0.81852 1.07801 1.24533 0.83964 0.90101 0.71107 1.90754 1.21070 1.85243 1.46307 1.84456 1.43714 1.20747 1.83366 1.19551 0.85721 0.80907 0.82660 1.90822 1.49181 1.51112 1.48558 0.73131 0.87523 0.88379 0.91736 0.90699 0.89538 0.92851 0.85002 0.88685 0.87864 0.80943 0.86830 0.71518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.26 19.25 74.32 1.43 -5.83 16 2 C -0.22 -9.68 13.65 31.13 0.42 -9.26 16 3 C 0.20 9.08 5.93 84.57 0.50 9.59 16 4 N -0.46 -23.93 1.84 -645.42 -1.19 -25.12 16 5 C -0.29 -16.81 6.52 84.04 0.55 -16.27 16 6 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 7 C 0.03 1.93 4.07 84.93 0.35 2.28 16 8 N -0.89 -53.14 13.96 21.66 0.30 -52.83 16 9 Si 0.89 42.72 24.91 68.60 1.71 44.43 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.25 -12.00 5.35 99.48 0.53 -11.47 16 13 C 0.50 25.29 4.41 87.66 0.39 25.68 16 14 O -0.60 -30.47 15.24 -3.07 -0.05 -30.52 16 15 C -0.12 -5.25 1.33 -12.42 -0.02 -5.26 16 16 H 0.10 4.79 2.93 -2.39 -0.01 4.78 16 17 C -0.11 -3.68 4.87 30.74 0.15 -3.53 16 18 C -0.13 -3.31 6.02 30.68 0.18 -3.13 16 19 C 0.11 2.50 6.32 86.49 0.55 3.04 16 20 N -0.60 -19.94 2.30 -830.97 -1.91 -21.85 16 21 C 0.12 3.27 5.81 85.63 0.50 3.77 16 22 C 0.46 14.42 8.38 71.24 0.60 15.02 16 23 O -0.54 -22.20 17.18 21.97 0.38 -21.83 16 24 O -0.51 -12.01 13.42 -51.44 -0.69 -12.70 16 25 C 0.52 23.73 6.91 87.72 0.61 24.33 16 26 O -0.52 -28.08 12.66 -3.02 -0.04 -28.11 16 27 H 0.25 6.48 7.80 -4.41 -0.03 6.44 16 28 H 0.11 4.38 8.07 -2.39 -0.02 4.36 16 29 H 0.10 4.16 7.26 -2.39 -0.02 4.14 16 30 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.09 2.88 7.59 -2.39 -0.02 2.86 16 33 H 0.05 1.59 8.12 -2.39 -0.02 1.57 16 34 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.09 1.75 8.10 -2.39 -0.02 1.73 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.17 2.60 8.02 -2.38 -0.02 2.59 16 38 H 0.11 3.53 7.13 -2.39 -0.02 3.51 16 39 H 0.42 6.86 9.10 -74.06 -0.67 6.19 16 Total: -1.00 -85.30 329.47 4.97 -80.34 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.25 Total: 27.77 kcal Atomic # 6 Polarization: 34.23 SS G_CDS: 6.20 Total: 40.44 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -2.80 Total: -99.80 kcal Atomic # 8 Polarization: -92.77 SS G_CDS: -0.40 Total: -93.17 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.71 Total: 44.43 kcal Total: -85.30 4.97 -80.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588395266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.097 kcal (2) G-P(sol) polarization free energy of solvation -85.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds