Wall clock time and date at job start Fri Apr 10 2020 17:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47259 * 332.64948 * 3 2 1 5 5 C 1.37092 * 120.00128 * 95.56919 * 4 3 2 6 6 H 1.08004 * 120.00166 * 163.70716 * 5 4 3 7 7 C 1.38952 * 120.00174 * 343.42537 * 5 4 3 8 8 N 1.31406 * 119.99932 * 339.56551 * 7 5 4 9 9 Si 1.86800 * 120.00176 * 159.55733 * 7 5 4 10 10 H 1.48495 * 109.47029 * 94.49652 * 9 7 5 11 11 H 1.48502 * 109.46985 * 214.49981 * 9 7 5 12 12 H 1.48499 * 109.47094 * 334.49567 * 9 7 5 13 13 C 1.34780 * 119.99722 * 275.56483 * 4 3 2 14 14 O 1.21293 * 119.99913 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00283 * 0.02562 * 13 4 3 16 16 N 1.46499 * 109.47422 * 179.97438 * 15 13 4 17 17 C 1.45751 * 117.94860 * 269.73960 * 16 15 13 18 18 C 1.53104 * 110.38657 * 160.74303 * 17 16 15 19 19 C 1.53347 * 108.52687 * 51.11230 * 18 17 16 20 20 C 1.53068 * 108.42539 * 292.30956 * 19 18 17 21 21 H 1.09001 * 109.32871 * 288.81448 * 20 19 18 22 22 C 1.50707 * 109.39855 * 169.03418 * 20 19 18 23 23 O 1.20826 * 120.00117 * 359.56991 * 22 20 19 24 24 O 1.34226 * 119.99616 * 179.57170 * 22 20 19 25 25 C 1.33360 * 117.94181 * 89.99865 * 16 15 13 26 26 O 1.21283 * 118.24788 * 2.20131 * 25 16 15 27 27 H 4.40637 * 5.51389 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.47212 * 212.64825 * 3 2 1 29 29 H 1.09002 * 109.46953 * 92.65053 * 3 2 1 30 30 H 0.97000 * 120.00000 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47038 * 299.99863 * 15 13 4 32 32 H 1.09002 * 109.47617 * 59.99734 * 15 13 4 33 33 H 1.09005 * 109.29945 * 281.23102 * 17 16 15 34 34 H 1.08994 * 109.30218 * 40.60721 * 17 16 15 35 35 H 1.09004 * 109.80467 * 291.32463 * 18 17 16 36 36 H 1.09002 * 109.54388 * 170.74349 * 18 17 16 37 37 H 1.09006 * 109.67069 * 172.57466 * 19 18 17 38 38 H 1.09000 * 109.70901 * 52.06394 * 19 18 17 39 39 H 0.96703 * 116.99683 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2259 0.6345 5 6 3.4725 -2.3085 -0.1357 6 1 4.0700 -3.1045 0.2837 7 6 3.0411 -2.3847 -1.4544 8 7 2.0130 -1.6692 -1.8517 9 14 3.9228 -3.5039 -2.6624 10 1 3.2279 -4.8149 -2.7203 11 1 3.9165 -2.8803 -4.0101 12 1 5.3250 -3.7061 -2.2172 13 6 3.2528 -1.2899 1.9757 14 8 3.6581 -2.3052 2.5010 15 6 2.8813 -0.1000 2.8224 16 7 3.0965 -0.4200 4.2357 17 6 1.9871 -1.0014 4.9811 18 6 2.4999 -1.6962 6.2454 19 6 3.4004 -0.7170 7.0082 20 6 4.6652 -0.4773 6.1801 21 1 5.2838 -1.3746 6.1982 22 6 5.4378 0.6752 6.7684 23 8 5.0158 1.2503 7.7436 24 8 6.5946 1.0628 6.2088 25 6 4.2936 -0.1561 4.7609 26 8 5.1267 0.3710 4.0546 27 1 -1.0498 -0.0004 0.0000 28 1 3.0090 0.8661 0.5544 29 1 3.0093 0.0483 -1.0266 30 1 1.7121 -1.7221 -2.7723 31 1 3.5015 0.7520 2.5439 32 1 1.8318 0.1468 2.6619 33 1 1.2866 -0.2134 5.2577 34 1 1.4747 -1.7308 4.3539 35 1 3.0721 -2.5831 5.9731 36 1 1.6555 -1.9812 6.8729 37 1 3.6698 -1.1431 7.9747 38 1 2.8748 0.2262 7.1568 39 1 7.0541 1.8070 6.6214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588464845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:25 Heat of formation + Delta-G solvation = -80.477003 kcal Electronic energy + Delta-G solvation = -26086.445651 eV Core-core repulsion = 22189.858748 eV Total energy + Delta-G solvation = -3896.586903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10761 -39.71553 -38.31668 -36.61466 -35.96358 -35.21011 -33.87372 -32.13806 -31.25550 -30.17343 -27.88710 -26.37478 -25.55118 -24.34754 -22.39643 -21.84553 -19.45699 -18.55128 -18.28349 -17.92180 -17.11366 -16.80201 -16.57943 -16.49700 -15.97747 -15.08714 -14.96714 -14.49827 -14.14655 -14.07027 -13.85649 -13.62498 -13.47888 -13.18069 -12.72908 -12.45508 -12.17948 -11.97974 -11.70318 -11.63090 -11.57383 -11.31225 -11.20653 -11.09563 -10.99759 -10.69922 -10.54057 -10.32234 -9.55408 -9.44042 -9.31578 -9.00993 -8.89935 -8.11020 -7.89425 -6.35280 -3.87040 1.96932 2.57462 2.95908 3.13670 3.24779 3.28244 3.32229 3.65398 3.85995 3.99040 4.17019 4.32102 4.45923 4.66716 4.78301 4.92778 5.03527 5.13670 5.23450 5.31798 5.40422 5.53798 5.64454 5.66001 5.73229 5.80424 5.84860 5.88110 6.12444 6.26695 6.39073 6.51025 6.75569 6.98583 7.54296 7.58640 7.81641 8.00301 8.29259 8.41356 8.74422 9.11238 9.33026 9.86880 10.65257 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.003987 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.961295 B = 7021.207688 C = 7409.787760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.113 4.113 3 C 0.228 3.772 4 N -0.437 5.437 5 C -0.311 4.311 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.865 5.865 9 Si 0.921 3.079 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.439 3.561 14 O -0.577 6.577 15 C 0.095 3.905 16 N -0.573 5.573 17 C 0.113 3.887 18 C -0.134 4.134 19 C -0.107 4.107 20 C -0.097 4.097 21 H 0.141 0.859 22 C 0.503 3.497 23 O -0.517 6.517 24 O -0.490 6.490 25 C 0.527 3.473 26 O -0.528 6.528 27 H 0.199 0.801 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.268 0.732 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 5.158 13.079 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.114 4.114 3 C 0.104 3.896 4 N -0.156 5.156 5 C -0.438 4.438 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.503 5.503 9 Si 0.747 3.253 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.227 3.773 14 O -0.460 6.460 15 C -0.031 4.031 16 N -0.304 5.304 17 C -0.010 4.010 18 C -0.171 4.171 19 C -0.145 4.145 20 C -0.119 4.119 21 H 0.158 0.842 22 C 0.344 3.656 23 O -0.406 6.406 24 O -0.299 6.299 25 C 0.313 3.687 26 O -0.404 6.404 27 H 0.217 0.783 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -0.253 4.769 12.864 13.722 hybrid contribution 0.184 -0.212 -0.637 0.696 sum -0.070 4.557 12.227 13.049 Atomic orbital electron populations 1.24277 0.95354 1.03438 1.04956 1.23211 0.94336 0.97296 0.96602 1.18333 0.84215 0.86169 1.00850 1.43677 1.55903 1.12230 1.03837 1.19654 1.30799 1.00842 0.92530 0.87881 1.25270 0.95230 0.98303 0.98481 1.70068 1.20970 1.41273 1.17983 0.86003 0.80179 0.79700 0.79371 1.20545 1.20762 1.19329 1.20309 0.84849 0.89441 0.82735 1.90505 1.50796 1.32896 1.71838 1.21432 1.02693 0.98697 0.80280 1.46721 1.11915 1.61326 1.10434 1.21491 0.88433 0.97776 0.93323 1.21926 1.00504 0.98844 0.95858 1.21624 0.93199 1.01370 0.98279 1.21136 0.98440 0.97793 0.94529 0.84180 1.22609 0.79290 0.83100 0.80566 1.90708 1.68743 1.54630 1.26491 1.84700 1.35038 1.51925 1.58265 1.19065 0.82178 0.79484 0.87977 1.90781 1.46753 1.42760 1.60124 0.78346 0.91989 0.86790 0.92134 0.87887 0.88604 0.91500 0.89846 0.90003 0.89091 0.89809 0.89868 0.73514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.13 19.25 29.55 0.57 -4.56 16 2 C -0.11 -2.42 10.93 -37.12 -0.41 -2.83 16 3 C 0.23 4.96 4.91 -6.83 -0.03 4.92 16 4 N -0.44 -10.92 2.60 -117.94 -0.31 -11.23 16 5 C -0.31 -8.48 9.35 -14.93 -0.14 -8.62 16 6 H 0.10 2.99 7.36 -52.48 -0.39 2.60 16 7 C 0.03 0.80 4.91 -17.47 -0.09 0.71 16 8 N -0.86 -22.24 9.37 55.50 0.52 -21.72 16 9 Si 0.92 20.38 29.60 -169.99 -5.03 15.35 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.44 10.51 7.62 -10.99 -0.08 10.42 16 14 O -0.58 -15.55 16.06 5.55 0.09 -15.46 16 15 C 0.10 1.78 4.30 -5.20 -0.02 1.76 16 16 N -0.57 -9.54 2.30 -176.23 -0.41 -9.95 16 17 C 0.11 1.44 6.32 -4.39 -0.03 1.41 16 18 C -0.13 -1.36 6.03 -26.50 -0.16 -1.51 16 19 C -0.11 -1.10 4.78 -26.52 -0.13 -1.23 16 20 C -0.10 -1.28 2.86 -93.14 -0.27 -1.54 16 21 H 0.14 1.67 8.14 -51.93 -0.42 1.24 16 22 C 0.50 6.72 7.51 36.01 0.27 6.99 16 23 O -0.52 -7.47 16.55 -18.75 -0.31 -7.78 16 24 O -0.49 -6.10 12.39 -45.22 -0.56 -6.66 16 25 C 0.53 9.11 7.01 -11.87 -0.08 9.02 16 26 O -0.53 -10.96 14.82 -11.60 -0.17 -11.13 16 27 H 0.20 3.13 7.80 -54.10 -0.42 2.71 16 28 H 0.06 1.14 6.67 -51.93 -0.35 0.79 16 29 H 0.11 2.64 6.36 -51.93 -0.33 2.31 16 30 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.10 1.92 6.41 -51.93 -0.33 1.58 16 32 H 0.10 1.60 7.40 -51.93 -0.38 1.22 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.08 0.93 8.12 -51.93 -0.42 0.50 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.88 7.72 -51.93 -0.40 0.48 16 39 H 0.41 2.94 9.10 45.56 0.41 3.35 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -35.48 336.73 -5.55 -41.03 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.86 Total: 7.53 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: -0.60 Total: 14.95 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.19 Total: -42.90 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.95 Total: -41.03 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.48 -5.55 -41.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588464845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.446 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds