Wall clock time and date at job start Fri Apr 10 2020 17:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47259 * 332.64948 * 3 2 1 5 5 C 1.37092 * 120.00128 * 95.56919 * 4 3 2 6 6 H 1.08004 * 120.00166 * 163.70716 * 5 4 3 7 7 C 1.38952 * 120.00174 * 343.42537 * 5 4 3 8 8 N 1.31406 * 119.99932 * 339.56551 * 7 5 4 9 9 Si 1.86800 * 120.00176 * 159.55733 * 7 5 4 10 10 H 1.48495 * 109.47029 * 94.49652 * 9 7 5 11 11 H 1.48502 * 109.46985 * 214.49981 * 9 7 5 12 12 H 1.48499 * 109.47094 * 334.49567 * 9 7 5 13 13 C 1.34780 * 119.99722 * 275.56483 * 4 3 2 14 14 O 1.21293 * 119.99913 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00283 * 0.02562 * 13 4 3 16 16 N 1.46499 * 109.47422 * 179.97438 * 15 13 4 17 17 C 1.45751 * 117.94860 * 269.73960 * 16 15 13 18 18 C 1.53104 * 110.38657 * 160.74303 * 17 16 15 19 19 C 1.53347 * 108.52687 * 51.11230 * 18 17 16 20 20 C 1.53068 * 108.42539 * 292.30956 * 19 18 17 21 21 H 1.09001 * 109.32871 * 288.81448 * 20 19 18 22 22 C 1.50707 * 109.39855 * 169.03418 * 20 19 18 23 23 O 1.20826 * 120.00117 * 359.56991 * 22 20 19 24 24 O 1.34226 * 119.99616 * 179.57170 * 22 20 19 25 25 C 1.33360 * 117.94181 * 89.99865 * 16 15 13 26 26 O 1.21283 * 118.24788 * 2.20131 * 25 16 15 27 27 H 4.40637 * 5.51389 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.47212 * 212.64825 * 3 2 1 29 29 H 1.09002 * 109.46953 * 92.65053 * 3 2 1 30 30 H 0.97000 * 120.00000 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47038 * 299.99863 * 15 13 4 32 32 H 1.09002 * 109.47617 * 59.99734 * 15 13 4 33 33 H 1.09005 * 109.29945 * 281.23102 * 17 16 15 34 34 H 1.08994 * 109.30218 * 40.60721 * 17 16 15 35 35 H 1.09004 * 109.80467 * 291.32463 * 18 17 16 36 36 H 1.09002 * 109.54388 * 170.74349 * 18 17 16 37 37 H 1.09006 * 109.67069 * 172.57466 * 19 18 17 38 38 H 1.09000 * 109.70901 * 52.06394 * 19 18 17 39 39 H 0.96703 * 116.99683 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2259 0.6345 5 6 3.4725 -2.3085 -0.1357 6 1 4.0700 -3.1045 0.2837 7 6 3.0411 -2.3847 -1.4544 8 7 2.0130 -1.6692 -1.8517 9 14 3.9228 -3.5039 -2.6624 10 1 3.2279 -4.8149 -2.7203 11 1 3.9165 -2.8803 -4.0101 12 1 5.3250 -3.7061 -2.2172 13 6 3.2528 -1.2899 1.9757 14 8 3.6581 -2.3052 2.5010 15 6 2.8813 -0.1000 2.8224 16 7 3.0965 -0.4200 4.2357 17 6 1.9871 -1.0014 4.9811 18 6 2.4999 -1.6962 6.2454 19 6 3.4004 -0.7170 7.0082 20 6 4.6652 -0.4773 6.1801 21 1 5.2838 -1.3746 6.1982 22 6 5.4378 0.6752 6.7684 23 8 5.0158 1.2503 7.7436 24 8 6.5946 1.0628 6.2088 25 6 4.2936 -0.1561 4.7609 26 8 5.1267 0.3710 4.0546 27 1 -1.0498 -0.0004 0.0000 28 1 3.0090 0.8661 0.5544 29 1 3.0093 0.0483 -1.0266 30 1 1.7121 -1.7221 -2.7723 31 1 3.5015 0.7520 2.5439 32 1 1.8318 0.1468 2.6619 33 1 1.2866 -0.2134 5.2577 34 1 1.4747 -1.7308 4.3539 35 1 3.0721 -2.5831 5.9731 36 1 1.6555 -1.9812 6.8729 37 1 3.6698 -1.1431 7.9747 38 1 2.8748 0.2262 7.1568 39 1 7.0541 1.8070 6.6214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588464845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:24 Heat of formation + Delta-G solvation = -104.453029 kcal Electronic energy + Delta-G solvation = -26087.485330 eV Core-core repulsion = 22189.858748 eV Total energy + Delta-G solvation = -3897.626581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.27830 -40.98891 -40.00495 -37.75573 -37.18018 -36.92158 -35.12513 -33.98018 -33.02613 -31.25202 -29.44090 -28.08675 -26.62616 -26.14990 -23.48885 -22.95134 -21.06738 -19.79534 -19.62765 -19.32083 -18.49390 -18.24917 -18.11801 -17.75853 -17.40130 -16.67643 -16.32071 -15.98305 -15.82240 -15.48947 -15.18361 -14.71881 -14.54302 -14.42657 -14.23055 -14.16681 -13.90075 -13.49813 -13.11713 -12.94784 -12.79495 -12.60952 -12.52547 -12.40546 -12.25855 -12.14487 -11.97992 -11.72441 -11.20115 -11.10952 -10.85648 -10.69745 -10.54777 -9.83866 -9.67483 -8.32301 -5.92270 0.91026 1.33042 1.34946 1.42400 1.54402 1.80359 1.91567 2.14728 2.19774 2.32823 2.38956 3.03751 3.21804 3.32567 3.46552 3.76403 3.84957 3.90603 4.03430 4.18378 4.25676 4.32405 4.36581 4.44311 4.59575 4.69051 4.82349 4.96419 4.98419 5.00845 5.21562 5.31413 5.44139 5.46138 5.49087 6.03303 6.33563 6.43393 6.92774 6.98990 7.13833 7.15316 7.40484 7.96167 8.65560 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.003987 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.961295 B = 7021.207688 C = 7409.787760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.158 4.158 3 C 0.231 3.769 4 N -0.450 5.450 5 C -0.349 4.349 6 H 0.071 0.929 7 C 0.006 3.994 8 N -0.870 5.870 9 Si 0.981 3.019 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.276 1.276 13 C 0.429 3.571 14 O -0.619 6.619 15 C 0.108 3.892 16 N -0.575 5.575 17 C 0.102 3.898 18 C -0.126 4.126 19 C -0.098 4.098 20 C -0.096 4.096 21 H 0.150 0.850 22 C 0.507 3.493 23 O -0.528 6.528 24 O -0.500 6.500 25 C 0.517 3.483 26 O -0.573 6.573 27 H 0.236 0.764 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.273 0.727 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 5.633 13.999 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.159 4.159 3 C 0.108 3.892 4 N -0.168 5.168 5 C -0.477 4.477 6 H 0.089 0.911 7 C -0.198 4.198 8 N -0.507 5.507 9 Si 0.805 3.195 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.201 1.201 13 C 0.218 3.782 14 O -0.505 6.505 15 C -0.019 4.019 16 N -0.305 5.305 17 C -0.020 4.020 18 C -0.163 4.163 19 C -0.135 4.135 20 C -0.118 4.118 21 H 0.168 0.832 22 C 0.349 3.651 23 O -0.418 6.418 24 O -0.313 6.313 25 C 0.305 3.695 26 O -0.453 6.453 27 H 0.253 0.747 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -1.803 5.276 13.794 14.878 hybrid contribution 0.622 -0.347 -0.954 1.191 sum -1.180 4.930 12.840 13.804 Atomic orbital electron populations 1.25152 0.96237 1.01267 1.02774 1.23309 0.94734 0.99267 0.98599 1.18310 0.85069 0.85822 0.99954 1.43874 1.55966 1.12613 1.04377 1.19505 1.32440 1.01735 0.94011 0.91058 1.25898 0.95425 0.99484 0.98972 1.70149 1.20848 1.41326 1.18342 0.85123 0.78558 0.78093 0.77728 1.20366 1.19112 1.20088 1.21212 0.83664 0.90478 0.82839 1.90458 1.52475 1.34946 1.72642 1.21236 1.03695 0.95975 0.80962 1.46958 1.12895 1.61005 1.09655 1.21843 0.87786 0.98584 0.93752 1.21939 1.01572 0.97780 0.95009 1.21648 0.91570 1.01625 0.98671 1.21238 1.00125 0.98132 0.92284 0.83243 1.22568 0.79356 0.82908 0.80259 1.90700 1.69109 1.54969 1.27009 1.84670 1.34978 1.52996 1.58630 1.19818 0.81678 0.78545 0.89470 1.90747 1.48031 1.44840 1.61693 0.74733 0.89177 0.88766 0.91726 0.87959 0.86325 0.88276 0.91547 0.91530 0.85367 0.87316 0.89641 0.71183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.70 19.25 74.32 1.43 -7.27 16 2 C -0.16 -6.63 10.93 31.12 0.34 -6.29 16 3 C 0.23 10.17 4.91 84.57 0.42 10.59 16 4 N -0.45 -23.15 2.60 -645.42 -1.68 -24.82 16 5 C -0.35 -19.81 9.35 84.04 0.79 -19.02 16 6 H 0.07 4.40 7.36 -2.91 -0.02 4.37 16 7 C 0.01 0.30 4.91 84.93 0.42 0.72 16 8 N -0.87 -44.58 9.37 21.66 0.20 -44.37 16 9 Si 0.98 42.22 29.60 68.60 2.03 44.25 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 13 C 0.43 21.18 7.62 87.65 0.67 21.85 16 14 O -0.62 -34.84 16.06 -3.07 -0.05 -34.89 16 15 C 0.11 4.06 4.30 85.63 0.37 4.42 16 16 N -0.57 -18.91 2.30 -830.65 -1.91 -20.83 16 17 C 0.10 2.43 6.32 86.56 0.55 2.97 16 18 C -0.13 -2.24 6.03 30.75 0.19 -2.05 16 19 C -0.10 -1.75 4.78 30.73 0.15 -1.60 16 20 C -0.10 -2.42 2.86 -12.43 -0.04 -2.46 16 21 H 0.15 3.45 8.14 -2.39 -0.02 3.43 16 22 C 0.51 12.97 7.51 71.24 0.54 13.50 16 23 O -0.53 -14.34 16.55 21.96 0.36 -13.97 16 24 O -0.50 -12.16 12.39 -45.66 -0.57 -12.73 16 25 C 0.52 17.84 7.01 87.71 0.61 18.46 16 26 O -0.57 -24.34 14.82 13.37 0.20 -24.15 16 27 H 0.24 6.50 7.80 -4.43 -0.03 6.46 16 28 H 0.09 3.34 6.67 -2.38 -0.02 3.32 16 29 H 0.09 4.46 6.36 -2.39 -0.02 4.45 16 30 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 31 H 0.10 3.85 6.41 -2.39 -0.02 3.83 16 32 H 0.12 3.85 7.40 -2.39 -0.02 3.84 16 33 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.07 1.42 8.12 -2.38 -0.02 1.40 16 36 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.08 1.55 7.72 -2.39 -0.02 1.53 16 39 H 0.43 5.79 9.10 -74.06 -0.67 5.12 16 Total: -1.00 -79.21 336.73 5.43 -73.78 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.42 Total: 23.91 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 6.42 Total: 33.81 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -3.39 Total: -90.02 kcal Atomic # 8 Polarization: -85.69 SS G_CDS: -0.05 Total: -85.74 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -79.21 5.43 -73.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588464845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.669 kcal (2) G-P(sol) polarization free energy of solvation -79.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds