Wall clock time and date at job start Fri Apr 10 2020 17:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 N 1.46506 * 109.46733 * 120.00142 * 2 1 3 13 13 C 1.46494 * 120.00420 * 60.00297 * 12 2 1 14 14 S 1.65596 * 119.99722 * 239.99722 * 12 2 1 15 15 O 1.42102 * 106.40462 * 203.54329 * 14 12 2 16 16 O 1.42096 * 106.40497 * 336.46446 * 14 12 2 17 17 N 1.65604 * 107.21710 * 90.00391 * 14 12 2 18 18 C 1.47425 * 125.64548 * 269.69296 * 17 14 12 19 19 C 1.55136 * 104.71976 * 155.81771 * 18 17 14 20 20 H 1.09000 * 111.19043 * 279.18500 * 19 18 17 21 21 O 1.42897 * 110.93632 * 155.28945 * 19 18 17 22 22 C 1.55149 * 101.48641 * 37.29334 * 19 18 17 23 23 H 1.08996 * 110.87451 * 82.76942 * 22 19 18 24 24 C 1.53007 * 110.71837 * 205.97307 * 22 19 18 25 25 O 1.42902 * 109.47120 * 179.97438 * 24 22 19 26 26 C 1.47019 * 125.64829 * 89.99771 * 17 14 12 27 27 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 28 28 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 30 30 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47196 * 89.99281 * 13 12 2 32 32 H 1.08997 * 109.47546 * 209.99782 * 13 12 2 33 33 H 1.09004 * 109.46880 * 330.00158 * 13 12 2 34 34 H 1.08997 * 110.36511 * 274.74092 * 18 17 14 35 35 H 1.08994 * 110.36903 * 37.06656 * 18 17 14 36 36 H 0.96694 * 114.00382 * 67.95746 * 21 19 18 37 37 H 1.09007 * 109.46830 * 299.97076 * 24 22 19 38 38 H 1.08988 * 109.47238 * 59.97289 * 24 22 19 39 39 H 0.96693 * 113.99713 * 179.97438 * 25 24 22 40 40 H 1.09003 * 109.88631 * 300.43966 * 26 17 14 41 41 H 1.08996 * 109.88413 * 61.60799 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1615 -4.4124 10 1 2.4875 -0.1402 -5.1119 11 1 3.6310 -1.7566 -3.7119 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.7118 -0.8790 2.9815 16 8 3.5793 1.1828 1.5749 17 7 1.9606 0.8089 3.3999 18 6 1.3783 2.1601 3.3065 19 6 0.0971 2.0984 4.1790 20 1 -0.7294 1.6426 3.6337 21 8 -0.2608 3.3980 4.6533 22 6 0.5619 1.1886 5.3466 23 1 1.1033 1.7654 6.0965 24 6 -0.6303 0.4670 5.9783 25 8 -0.1727 -0.3624 7.0482 26 6 1.5014 0.1829 4.6483 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 0.7097 1.1618 -3.4844 31 1 2.4157 -2.7377 0.9717 32 1 1.6237 -2.2853 2.5002 33 1 0.6904 -2.3003 0.9846 34 1 2.0736 2.9009 3.7014 35 1 1.1221 2.3922 2.2728 36 1 -0.5578 4.0020 3.9592 37 1 -1.3366 1.2019 6.3647 38 1 -1.1223 -0.1491 5.2258 39 1 -0.8769 -0.8510 7.4959 40 1 0.9600 -0.7364 4.4249 41 1 2.3552 -0.0340 5.2902 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771772782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:52 Heat of formation + Delta-G solvation = -165.211495 kcal Electronic energy + Delta-G solvation = -25508.227860 eV Core-core repulsion = 21743.410546 eV Total energy + Delta-G solvation = -3764.817315 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.37094 -36.80061 -36.67291 -36.19189 -35.64357 -35.24591 -32.61192 -31.30875 -29.15307 -28.41882 -25.66353 -25.40013 -25.11571 -22.37276 -20.71922 -20.57235 -18.58851 -17.87361 -17.42501 -17.26761 -16.91177 -16.28785 -15.90647 -15.22798 -14.85841 -14.63383 -14.22312 -13.93561 -13.59482 -13.51229 -13.22465 -12.90622 -12.81158 -12.64302 -12.05168 -12.01523 -11.76060 -11.59773 -11.52479 -11.40667 -11.26934 -11.17698 -11.01093 -10.83004 -10.74884 -10.51542 -10.34723 -10.23564 -10.17416 -10.03795 -9.30712 -8.87557 -8.49038 -8.00883 -6.11145 -4.17298 1.08156 3.26310 3.33472 3.35952 3.39565 3.74740 3.97012 4.16432 4.30221 4.38474 4.67500 4.79824 4.99496 5.08535 5.13648 5.20583 5.26243 5.37576 5.41157 5.59604 5.65465 5.80572 5.85090 6.04744 6.11433 6.16617 6.34180 6.44103 6.58392 6.71435 6.75094 6.95623 7.39023 7.41184 7.43504 7.58887 7.74407 7.99239 8.23435 8.84998 9.48681 10.94666 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.020348 B = 0.004646 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.698948 B = 6025.652743 C = 6349.946478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.989 5.989 13 C 0.110 3.890 14 S 2.790 3.210 15 O -0.988 6.988 16 O -0.968 6.968 17 N -1.021 6.021 18 C 0.095 3.905 19 C 0.100 3.900 20 H 0.079 0.921 21 O -0.559 6.559 22 C -0.089 4.089 23 H 0.099 0.901 24 C 0.087 3.913 25 O -0.572 6.572 26 C 0.135 3.865 27 H 0.093 0.907 28 H 0.034 0.966 29 H 0.008 0.992 30 H 0.263 0.737 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.385 0.615 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.380 0.620 40 H 0.067 0.933 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.086 0.761 14.633 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.832 5.832 13 C -0.036 4.036 14 S 2.801 3.199 15 O -0.972 6.972 16 O -0.952 6.952 17 N -0.861 5.861 18 C -0.031 4.031 19 C 0.039 3.961 20 H 0.097 0.903 21 O -0.364 6.364 22 C -0.109 4.109 23 H 0.118 0.882 24 C 0.008 3.992 25 O -0.377 6.377 26 C 0.009 3.991 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.233 0.767 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.227 0.773 40 H 0.086 0.914 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.391 0.884 14.815 15.790 hybrid contribution -0.884 -0.484 -1.358 1.691 sum -6.275 0.401 13.457 14.854 Atomic orbital electron populations 1.22121 0.98339 0.99765 1.00436 1.18741 0.91239 0.92986 0.80612 0.92441 1.21332 1.31706 1.12855 0.89988 0.91928 1.24904 0.94933 0.95004 0.99008 1.69847 1.36648 1.22707 1.23804 0.86484 0.79332 0.79280 0.82259 1.20654 1.21103 1.19809 1.57805 1.70128 1.19783 1.35458 1.21146 1.01696 0.82051 0.98738 1.01725 0.73365 0.72954 0.71884 1.93540 1.68755 1.60203 1.74746 1.93600 1.73555 1.56091 1.71908 1.59350 1.67473 1.24660 1.34573 1.22601 0.94716 0.84505 1.01286 1.22979 0.95642 0.83794 0.93668 0.90290 1.86465 1.88057 1.23368 1.38505 1.22164 0.96191 0.95585 0.96934 0.88236 1.22150 0.95121 0.92842 0.89050 1.86488 1.38578 1.62896 1.49736 1.21602 0.97608 0.95180 0.84714 0.88847 0.94726 0.97262 0.92696 0.93181 0.93388 0.91003 0.90606 0.89761 0.76734 0.92821 0.93126 0.77319 0.91433 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.95 37.16 0.33 -2.86 16 2 C 0.27 6.40 2.62 -69.08 -0.18 6.22 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -13.84 8.37 -34.44 -0.29 -14.13 16 5 H 0.06 1.67 7.64 -52.48 -0.40 1.27 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.31 11.32 55.43 0.63 -23.68 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.99 -20.51 3.12 -115.86 -0.36 -20.87 16 13 C 0.11 1.96 9.53 59.84 0.57 2.53 16 14 S 2.79 56.41 6.30 -107.50 -0.68 55.73 16 15 O -0.99 -21.22 16.79 -57.17 -0.96 -22.18 16 16 O -0.97 -22.87 16.28 -57.17 -0.93 -23.80 16 17 N -1.02 -16.22 3.75 -111.29 -0.42 -16.63 16 18 C 0.10 1.32 6.72 -2.41 -0.02 1.30 16 19 C 0.10 1.11 3.89 -24.46 -0.10 1.01 16 20 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 21 O -0.56 -5.61 13.47 -35.23 -0.47 -6.09 16 22 C -0.09 -1.02 2.97 -88.78 -0.26 -1.28 16 23 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 24 C 0.09 0.81 6.36 37.16 0.24 1.04 16 25 O -0.57 -5.43 13.50 -35.23 -0.48 -5.90 16 26 C 0.13 1.82 6.44 -3.06 -0.02 1.80 16 27 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 28 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 33 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.38 2.37 9.12 45.56 0.42 2.79 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.43 8.06 -51.94 -0.42 0.01 16 39 H 0.38 1.81 9.12 45.56 0.42 2.23 16 40 H 0.07 0.86 7.77 -51.93 -0.40 0.45 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -33.95 345.47 -7.97 -41.91 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.66 Total: 3.13 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 0.18 Total: -2.76 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.15 Total: -61.19 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -2.84 Total: -57.97 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 56.41 SS G_CDS: -0.68 Total: 55.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.95 -7.97 -41.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771772782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.297 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds