Wall clock time and date at job start Fri Apr 10 2020 17:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 N 1.46506 * 109.46733 * 120.00142 * 2 1 3 13 13 C 1.46494 * 120.00420 * 60.00297 * 12 2 1 14 14 S 1.65596 * 119.99722 * 239.99722 * 12 2 1 15 15 O 1.42102 * 106.40462 * 203.54329 * 14 12 2 16 16 O 1.42096 * 106.40497 * 336.46446 * 14 12 2 17 17 N 1.65604 * 107.21710 * 90.00391 * 14 12 2 18 18 C 1.47425 * 125.64548 * 269.69296 * 17 14 12 19 19 C 1.55136 * 104.71976 * 155.81771 * 18 17 14 20 20 H 1.09000 * 111.19043 * 279.18500 * 19 18 17 21 21 O 1.42897 * 110.93632 * 155.28945 * 19 18 17 22 22 C 1.55149 * 101.48641 * 37.29334 * 19 18 17 23 23 H 1.08996 * 110.87451 * 82.76942 * 22 19 18 24 24 C 1.53007 * 110.71837 * 205.97307 * 22 19 18 25 25 O 1.42902 * 109.47120 * 179.97438 * 24 22 19 26 26 C 1.47019 * 125.64829 * 89.99771 * 17 14 12 27 27 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 28 28 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 30 30 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47196 * 89.99281 * 13 12 2 32 32 H 1.08997 * 109.47546 * 209.99782 * 13 12 2 33 33 H 1.09004 * 109.46880 * 330.00158 * 13 12 2 34 34 H 1.08997 * 110.36511 * 274.74092 * 18 17 14 35 35 H 1.08994 * 110.36903 * 37.06656 * 18 17 14 36 36 H 0.96694 * 114.00382 * 67.95746 * 21 19 18 37 37 H 1.09007 * 109.46830 * 299.97076 * 24 22 19 38 38 H 1.08988 * 109.47238 * 59.97289 * 24 22 19 39 39 H 0.96693 * 113.99713 * 179.97438 * 25 24 22 40 40 H 1.09003 * 109.88631 * 300.43966 * 26 17 14 41 41 H 1.08996 * 109.88413 * 61.60799 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1615 -4.4124 10 1 2.4875 -0.1402 -5.1119 11 1 3.6310 -1.7566 -3.7119 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.7118 -0.8790 2.9815 16 8 3.5793 1.1828 1.5749 17 7 1.9606 0.8089 3.3999 18 6 1.3783 2.1601 3.3065 19 6 0.0971 2.0984 4.1790 20 1 -0.7294 1.6426 3.6337 21 8 -0.2608 3.3980 4.6533 22 6 0.5619 1.1886 5.3466 23 1 1.1033 1.7654 6.0965 24 6 -0.6303 0.4670 5.9783 25 8 -0.1727 -0.3624 7.0482 26 6 1.5014 0.1829 4.6483 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 0.7097 1.1618 -3.4844 31 1 2.4157 -2.7377 0.9717 32 1 1.6237 -2.2853 2.5002 33 1 0.6904 -2.3003 0.9846 34 1 2.0736 2.9009 3.7014 35 1 1.1221 2.3922 2.2728 36 1 -0.5578 4.0020 3.9592 37 1 -1.3366 1.2019 6.3647 38 1 -1.1223 -0.1491 5.2258 39 1 -0.8769 -0.8510 7.4959 40 1 0.9600 -0.7364 4.4249 41 1 2.3552 -0.0340 5.2902 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771772782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:51 Heat of formation + Delta-G solvation = -195.914362 kcal Electronic energy + Delta-G solvation = -25509.559237 eV Core-core repulsion = 21743.410546 eV Total energy + Delta-G solvation = -3766.148691 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32652 -38.43040 -37.91694 -37.45688 -36.96698 -36.57619 -34.54242 -32.27288 -30.93338 -29.47137 -27.29882 -27.05423 -26.25026 -23.44105 -22.47343 -21.47634 -20.03323 -19.04012 -18.74118 -18.42209 -18.19204 -17.99903 -17.26945 -16.66153 -16.24777 -15.78823 -15.42992 -15.10463 -14.97499 -14.80932 -14.58393 -14.47191 -13.92685 -13.76729 -13.56570 -13.43381 -13.29422 -13.23751 -13.18324 -13.02387 -12.80129 -12.60851 -12.57857 -12.28129 -12.18181 -12.08562 -11.91259 -11.66290 -11.16315 -11.11495 -10.83850 -10.51184 -10.10748 -9.69945 -8.12949 -6.25848 -0.49262 1.41412 1.44049 1.53125 1.93822 2.41122 2.51476 2.99965 3.06713 3.15592 3.25635 3.66324 3.85039 4.00396 4.06548 4.19938 4.28676 4.38897 4.45115 4.59233 4.64923 4.77392 4.78227 4.80314 4.85351 4.96395 4.99205 5.05153 5.10950 5.14652 5.18971 5.29533 5.60943 5.75597 5.86521 6.12979 6.29683 6.80871 6.82276 6.96973 7.42989 8.91112 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.020348 B = 0.004646 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.698948 B = 6025.652743 C = 6349.946478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.272 3.728 3 H 0.025 0.975 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.995 5.995 13 C 0.104 3.896 14 S 2.805 3.195 15 O -1.005 7.005 16 O -1.010 7.010 17 N -1.017 6.017 18 C 0.086 3.914 19 C 0.115 3.885 20 H 0.096 0.904 21 O -0.563 6.563 22 C -0.086 4.086 23 H 0.091 0.909 24 C 0.091 3.909 25 O -0.591 6.591 26 C 0.128 3.872 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.402 0.598 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.400 0.600 40 H 0.080 0.920 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.770 0.158 15.644 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.043 0.957 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.837 5.837 13 C -0.041 4.041 14 S 2.816 3.184 15 O -0.989 6.989 16 O -0.994 6.994 17 N -0.859 5.859 18 C -0.040 4.040 19 C 0.054 3.946 20 H 0.113 0.887 21 O -0.371 6.371 22 C -0.106 4.106 23 H 0.109 0.891 24 C 0.013 3.987 25 O -0.400 6.400 26 C 0.003 3.997 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.250 0.750 40 H 0.099 0.901 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.091 0.266 15.832 17.350 hybrid contribution -0.340 -0.256 -1.572 1.629 sum -7.431 0.010 14.260 16.080 Atomic orbital electron populations 1.21899 0.96411 1.00338 1.00627 1.18451 0.92554 0.91256 0.80952 0.95735 1.21636 1.31902 1.12890 0.91551 0.92827 1.25584 0.95180 0.95700 1.01467 1.69951 1.37197 1.23495 1.24374 0.85632 0.78739 0.78507 0.79199 1.19378 1.20859 1.20251 1.57682 1.70052 1.21001 1.34928 1.21344 1.01857 0.80240 1.00696 1.00974 0.73420 0.72181 0.71822 1.93507 1.69686 1.60779 1.74899 1.93538 1.75090 1.57457 1.73303 1.58908 1.67081 1.25506 1.34423 1.22841 0.96331 0.83233 1.01635 1.22811 0.94422 0.84456 0.92863 0.88672 1.86441 1.87909 1.23284 1.39497 1.22155 0.96615 0.95209 0.96670 0.89083 1.22095 0.93935 0.93260 0.89385 1.86436 1.40257 1.63276 1.50010 1.21841 0.98033 0.96352 0.83465 0.91354 0.93841 0.94277 0.92578 0.94061 0.90506 0.89975 0.90709 0.90643 0.74711 0.91552 0.91819 0.74977 0.90133 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.95 71.98 0.64 -5.01 16 2 C 0.27 13.11 2.62 44.24 0.12 13.22 16 3 H 0.02 1.35 6.91 -2.39 -0.02 1.33 16 4 C -0.54 -29.06 8.37 25.60 0.21 -28.84 16 5 H 0.05 2.90 7.64 -2.91 -0.02 2.88 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -49.99 11.32 21.45 0.24 -49.75 16 8 Si 0.95 42.93 29.54 68.60 2.03 44.95 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 N -0.99 -40.92 3.12 -520.46 -1.62 -42.54 16 13 C 0.10 3.57 9.53 127.77 1.22 4.79 16 14 S 2.80 113.92 6.30 -56.49 -0.36 113.56 16 15 O -1.00 -43.00 16.79 -128.00 -2.15 -45.15 16 16 O -1.01 -49.20 16.28 -128.00 -2.08 -51.28 16 17 N -1.02 -31.49 3.75 -506.01 -1.90 -33.39 16 18 C 0.09 2.29 6.72 86.93 0.58 2.87 16 19 C 0.12 2.27 3.89 32.06 0.12 2.40 16 20 H 0.10 1.62 8.05 -2.39 -0.02 1.60 16 21 O -0.56 -9.86 13.47 -148.98 -2.01 -11.87 16 22 C -0.09 -1.77 2.97 -9.60 -0.03 -1.80 16 23 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 24 C 0.09 1.40 6.36 71.98 0.46 1.86 16 25 O -0.59 -9.57 13.50 -148.98 -2.01 -11.58 16 26 C 0.13 3.24 6.44 86.73 0.56 3.79 16 27 H 0.07 3.28 6.07 -2.39 -0.01 3.27 16 28 H 0.04 1.73 6.66 -2.38 -0.02 1.71 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.08 2.16 7.79 -2.39 -0.02 2.14 16 33 H 0.08 2.63 6.43 -2.38 -0.02 2.61 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.40 3.93 9.12 -74.06 -0.68 3.25 16 37 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 38 H 0.06 0.83 8.06 -2.39 -0.02 0.81 16 39 H 0.40 2.63 9.12 -74.06 -0.68 1.96 16 40 H 0.08 1.83 7.77 -2.39 -0.02 1.81 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -72.92 345.47 -5.82 -78.74 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -0.30 Total: 13.46 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 4.34 Total: -5.16 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -3.28 Total: -125.68 kcal Atomic # 8 Polarization: -111.63 SS G_CDS: -8.25 Total: -119.88 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 113.92 SS G_CDS: -0.36 Total: 113.56 kcal Total: -72.92 -5.82 -78.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771772782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.174 kcal (2) G-P(sol) polarization free energy of solvation -72.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds