Wall clock time and date at job start Fri Apr 10 2020 17:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00307 * 2 1 4 4 H 1.48496 * 109.46982 * 270.00087 * 3 2 1 5 5 H 1.48500 * 109.46872 * 29.99875 * 3 2 1 6 6 H 1.48496 * 109.46897 * 150.00214 * 3 2 1 7 7 C 1.37879 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00029 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47588 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97606 * 124.99841 * 10 9 7 12 12 C 1.35240 * 107.85537 * 179.74003 * 11 10 9 13 13 C 1.40395 * 107.86992 * 0.02562 * 12 11 10 14 14 N 1.40199 * 125.97127 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00135 * 0.02562 * 14 13 12 16 16 O 1.21589 * 119.99978 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00263 * 179.97438 * 15 14 13 18 18 C 1.47025 * 125.64649 * 359.69722 * 17 15 14 19 19 C 1.54333 * 107.26268 * 178.84511 * 18 17 15 20 20 C 1.55147 * 103.02488 * 338.14190 * 19 18 17 21 21 H 1.09006 * 111.00759 * 277.23384 * 20 19 18 22 22 C 1.50704 * 111.00815 * 153.38136 * 20 19 18 23 23 O 1.20825 * 119.99649 * 6.34928 * 22 20 19 24 24 O 1.34221 * 119.99937 * 186.35235 * 22 20 19 25 25 C 1.47424 * 125.64906 * 179.97438 * 17 15 14 26 26 N 1.31209 * 108.05705 * 0.02562 * 13 12 11 27 27 H 0.97005 * 119.99687 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46952 * 59.99825 * 9 7 2 29 29 H 1.09001 * 109.47222 * 300.00507 * 9 7 2 30 30 H 1.07999 * 126.07111 * 359.74034 * 11 10 9 31 31 H 1.08007 * 126.06070 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99920 * 180.02562 * 14 13 12 33 33 H 1.09004 * 109.87943 * 298.39365 * 18 17 15 34 34 H 1.09004 * 109.88027 * 59.55764 * 18 17 15 35 35 H 1.09007 * 110.84844 * 219.67029 * 19 18 17 36 36 H 1.09002 * 110.66497 * 96.52436 * 19 18 17 37 37 H 0.96704 * 116.99605 * 180.02562 * 24 22 20 38 38 H 1.08994 * 110.36870 * 322.93740 * 25 17 15 39 39 H 1.08999 * 110.36524 * 85.25778 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 7 3.9998 -2.5755 -0.0010 11 6 4.8544 -3.1143 -0.8959 12 6 5.0600 -4.4049 -0.5478 13 6 4.3016 -4.6664 0.6044 14 7 4.2353 -5.8894 1.2866 15 6 4.9427 -6.9475 0.8434 16 8 5.6389 -6.8413 -0.1478 17 7 4.8794 -8.1231 1.4995 18 6 4.0873 -8.3874 2.7097 19 6 4.3016 -9.8695 3.0826 20 6 4.7618 -10.5040 1.7437 21 1 3.9070 -10.7481 1.1128 22 6 5.6151 -11.7219 1.9881 23 8 5.7582 -12.1438 3.1112 24 8 6.2162 -12.3379 0.9581 25 6 5.5972 -9.3554 1.1258 26 7 3.6650 -3.5665 0.9305 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6806 0.8889 29 1 3.8745 -0.6802 -0.8911 30 1 5.2956 -2.6053 -1.7401 31 1 5.6950 -5.1093 -1.0646 32 1 3.6802 -5.9741 2.0776 33 1 4.4272 -7.7455 3.5225 34 1 3.0314 -8.2065 2.5084 35 1 3.3706 -10.3222 3.4241 36 1 5.0773 -9.9668 3.8422 37 1 6.7530 -13.1153 1.1643 38 1 5.6379 -9.4567 0.0414 39 1 6.6033 -9.3503 1.5452 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819091205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:49 Heat of formation + Delta-G solvation = -19.830583 kcal Electronic energy + Delta-G solvation = -24381.982536 eV Core-core repulsion = 20520.318210 eV Total energy + Delta-G solvation = -3861.664326 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.20625 -40.68950 -39.79539 -37.73102 -36.57260 -34.81205 -33.35715 -32.29583 -31.02533 -29.81955 -29.35789 -27.19301 -25.18051 -23.50933 -22.59317 -21.32808 -20.90002 -20.21769 -19.37634 -18.58661 -18.13457 -17.58081 -17.05603 -16.62119 -16.16130 -15.83315 -15.67470 -14.90064 -14.76867 -14.34720 -14.06441 -13.78558 -13.60873 -13.27552 -13.12317 -13.03896 -12.53623 -12.37554 -12.18552 -12.14037 -12.03269 -11.86037 -11.43606 -11.17512 -11.05462 -10.78277 -10.66087 -10.14430 -10.00493 -9.79155 -9.52516 -9.00090 -8.76325 -8.17821 -7.48594 -6.23317 -4.25435 1.62346 2.09960 2.52701 2.59403 3.00901 3.15351 3.22071 3.23099 3.34826 3.71008 3.76272 4.00557 4.11337 4.23242 4.42192 4.67054 4.73983 4.85623 5.04570 5.16936 5.29694 5.31346 5.37470 5.45273 5.56527 5.69673 5.77917 5.98965 6.19709 6.36351 6.45729 6.59361 6.70297 6.86649 7.27703 7.37369 7.40823 7.77391 7.83529 8.34122 8.48064 8.58257 8.86635 9.31774 10.89394 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.037449 B = 0.002379 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.510756 B =11768.588265 C =12220.133002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.278 3.722 14 N -0.639 5.639 15 C 0.735 3.265 16 O -0.562 6.562 17 N -0.637 5.637 18 C 0.093 3.907 19 C -0.112 4.112 20 C -0.102 4.102 21 H 0.128 0.872 22 C 0.495 3.505 23 O -0.510 6.510 24 O -0.511 6.511 25 C 0.144 3.856 26 N -0.299 5.299 27 H 0.268 0.732 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.169 0.831 31 H 0.163 0.837 32 H 0.408 0.592 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.413 0.587 38 H 0.096 0.904 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.427 -21.664 3.939 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.313 4.313 13 C 0.023 3.977 14 N -0.289 5.289 15 C 0.436 3.564 16 O -0.437 6.437 17 N -0.377 5.377 18 C -0.030 4.030 19 C -0.150 4.150 20 C -0.122 4.122 21 H 0.146 0.854 22 C 0.336 3.664 23 O -0.397 6.397 24 O -0.323 6.323 25 C 0.021 3.979 26 N -0.130 5.130 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.186 0.814 31 H 0.180 0.820 32 H 0.243 0.757 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.272 0.728 38 H 0.115 0.885 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.727 -20.466 4.205 23.487 hybrid contribution 0.753 -0.028 0.041 0.755 sum 11.480 -20.494 4.246 23.871 Atomic orbital electron populations 1.69877 1.06156 1.27280 1.49221 1.24839 0.94876 0.98805 0.94285 0.86902 0.80437 0.83825 0.78920 1.19709 1.20556 1.18860 1.21111 0.87808 0.95688 1.52580 0.89648 1.20041 0.97433 0.73021 0.98186 1.48592 1.32685 1.10268 1.18631 1.22552 0.95902 0.94657 0.96686 1.21528 1.11505 0.96797 1.01503 1.18774 0.98785 0.85828 0.94269 1.41339 1.48967 1.07349 1.31254 1.15016 0.80433 0.78683 0.82278 1.90883 1.44215 1.82159 1.26419 1.47384 1.50762 1.09805 1.29727 1.22164 0.96617 0.96621 0.87644 1.22610 1.03911 0.93040 0.95394 1.22237 0.98646 0.90465 1.00808 0.85446 1.22915 0.77297 0.83970 0.82192 1.90750 1.59449 1.64969 1.24554 1.84554 1.61754 1.45561 1.40433 1.21841 0.94282 0.80033 1.01775 1.77386 1.23904 0.95660 1.16017 0.92196 0.94061 0.93308 0.81370 0.81999 0.75691 0.90457 0.90513 0.88670 0.88893 0.72773 0.88537 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 20.06 27.47 -169.99 -4.67 15.39 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 7 C -0.53 -15.01 9.79 -34.44 -0.34 -15.34 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 C 0.23 5.48 5.33 -5.19 -0.03 5.45 16 10 N -0.32 -7.23 3.67 -62.56 -0.23 -7.46 16 11 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 12 C -0.28 -5.50 9.60 -39.84 -0.38 -5.88 16 13 C 0.28 5.55 8.11 -154.36 -1.25 4.29 16 14 N -0.64 -10.01 5.41 -15.51 -0.08 -10.09 16 15 C 0.73 10.87 8.46 -86.92 -0.74 10.13 16 16 O -0.56 -10.03 13.73 5.29 0.07 -9.96 16 17 N -0.64 -6.58 3.33 -176.24 -0.59 -7.17 16 18 C 0.09 0.65 6.15 -3.06 -0.02 0.63 16 19 C -0.11 -0.63 6.03 -24.90 -0.15 -0.78 16 20 C -0.10 -0.62 3.55 -89.64 -0.32 -0.94 16 21 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 22 C 0.49 3.40 7.63 36.01 0.27 3.68 16 23 O -0.51 -4.94 16.55 -18.75 -0.31 -5.25 16 24 O -0.51 -2.58 13.41 -39.23 -0.53 -3.11 16 25 C 0.14 1.20 6.35 -2.54 -0.02 1.18 16 26 N -0.30 -6.83 12.42 31.44 0.39 -6.44 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 28 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 29 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 30 H 0.17 2.55 8.06 -52.49 -0.42 2.12 16 31 H 0.16 3.09 5.91 -52.48 -0.31 2.78 16 32 H 0.41 5.29 7.81 -40.82 -0.32 4.98 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.59 7.49 -51.93 -0.39 0.20 16 37 H 0.41 0.42 9.10 45.56 0.41 0.84 16 38 H 0.10 0.86 8.04 -51.93 -0.42 0.44 16 39 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -36.86 336.68 -7.26 -44.12 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.90 Total: 5.42 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -3.26 Total: 5.23 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.26 Total: -56.92 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.76 Total: -18.32 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.86 -7.26 -44.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819091205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.289 kcal (2) G-P(sol) polarization free energy of solvation -36.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds