Wall clock time and date at job start Fri Apr 10 2020 17:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00307 * 2 1 4 4 H 1.48496 * 109.46982 * 270.00087 * 3 2 1 5 5 H 1.48500 * 109.46872 * 29.99875 * 3 2 1 6 6 H 1.48496 * 109.46897 * 150.00214 * 3 2 1 7 7 C 1.37879 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00029 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47588 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97606 * 124.99841 * 10 9 7 12 12 C 1.35240 * 107.85537 * 179.74003 * 11 10 9 13 13 C 1.40395 * 107.86992 * 0.02562 * 12 11 10 14 14 N 1.40199 * 125.97127 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00135 * 0.02562 * 14 13 12 16 16 O 1.21589 * 119.99978 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00263 * 179.97438 * 15 14 13 18 18 C 1.47025 * 125.64649 * 359.69722 * 17 15 14 19 19 C 1.54333 * 107.26268 * 178.84511 * 18 17 15 20 20 C 1.55147 * 103.02488 * 338.14190 * 19 18 17 21 21 H 1.09006 * 111.00759 * 277.23384 * 20 19 18 22 22 C 1.50704 * 111.00815 * 153.38136 * 20 19 18 23 23 O 1.20825 * 119.99649 * 6.34928 * 22 20 19 24 24 O 1.34221 * 119.99937 * 186.35235 * 22 20 19 25 25 C 1.47424 * 125.64906 * 179.97438 * 17 15 14 26 26 N 1.31209 * 108.05705 * 0.02562 * 13 12 11 27 27 H 0.97005 * 119.99687 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46952 * 59.99825 * 9 7 2 29 29 H 1.09001 * 109.47222 * 300.00507 * 9 7 2 30 30 H 1.07999 * 126.07111 * 359.74034 * 11 10 9 31 31 H 1.08007 * 126.06070 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99920 * 180.02562 * 14 13 12 33 33 H 1.09004 * 109.87943 * 298.39365 * 18 17 15 34 34 H 1.09004 * 109.88027 * 59.55764 * 18 17 15 35 35 H 1.09007 * 110.84844 * 219.67029 * 19 18 17 36 36 H 1.09002 * 110.66497 * 96.52436 * 19 18 17 37 37 H 0.96704 * 116.99605 * 180.02562 * 24 22 20 38 38 H 1.08994 * 110.36870 * 322.93740 * 25 17 15 39 39 H 1.08999 * 110.36524 * 85.25778 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 7 3.9998 -2.5755 -0.0010 11 6 4.8544 -3.1143 -0.8959 12 6 5.0600 -4.4049 -0.5478 13 6 4.3016 -4.6664 0.6044 14 7 4.2353 -5.8894 1.2866 15 6 4.9427 -6.9475 0.8434 16 8 5.6389 -6.8413 -0.1478 17 7 4.8794 -8.1231 1.4995 18 6 4.0873 -8.3874 2.7097 19 6 4.3016 -9.8695 3.0826 20 6 4.7618 -10.5040 1.7437 21 1 3.9070 -10.7481 1.1128 22 6 5.6151 -11.7219 1.9881 23 8 5.7582 -12.1438 3.1112 24 8 6.2162 -12.3379 0.9581 25 6 5.5972 -9.3554 1.1258 26 7 3.6650 -3.5665 0.9305 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6806 0.8889 29 1 3.8745 -0.6802 -0.8911 30 1 5.2956 -2.6053 -1.7401 31 1 5.6950 -5.1093 -1.0646 32 1 3.6802 -5.9741 2.0776 33 1 4.4272 -7.7455 3.5225 34 1 3.0314 -8.2065 2.5084 35 1 3.3706 -10.3222 3.4241 36 1 5.0773 -9.9668 3.8422 37 1 6.7530 -13.1153 1.1643 38 1 5.6379 -9.4567 0.0414 39 1 6.6033 -9.3503 1.5452 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819091205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:48 Heat of formation + Delta-G solvation = -47.366973 kcal Electronic energy + Delta-G solvation = -24383.176604 eV Core-core repulsion = 20520.318210 eV Total energy + Delta-G solvation = -3862.858393 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.31080 -41.67227 -40.86084 -38.58541 -37.11171 -36.24178 -35.21308 -33.50452 -32.49187 -30.96688 -30.39565 -28.96856 -26.11711 -24.46397 -24.04528 -22.63388 -21.75837 -21.42242 -20.60925 -19.17082 -19.12184 -19.07018 -18.19679 -18.07270 -17.18452 -16.86604 -16.72232 -16.30106 -16.10868 -15.52424 -15.27339 -14.82043 -14.66038 -14.37789 -14.23174 -14.15663 -13.93070 -13.78900 -13.68388 -13.00388 -12.78471 -12.56971 -12.52066 -12.42558 -12.31305 -11.94128 -11.82211 -11.65705 -11.62762 -11.47547 -11.15007 -10.85378 -9.93815 -9.70995 -9.03166 -8.36014 -6.45989 0.90238 1.05824 1.18677 1.38046 1.40991 1.50672 1.65987 1.89543 2.15763 2.30396 2.36138 2.83844 2.96720 3.22016 3.43729 3.92764 3.94537 4.12214 4.19187 4.21623 4.40374 4.55840 4.61858 4.64656 4.73862 4.77452 4.85864 4.91200 4.94672 5.02554 5.10982 5.26041 5.32133 5.58969 5.75036 5.91226 6.02954 6.42485 6.54964 6.61596 6.96737 7.06799 7.16956 7.31458 8.81041 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.037449 B = 0.002379 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.510756 B =11768.588265 C =12220.133002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.027 0.973 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.062 3.938 12 C -0.293 4.293 13 C 0.284 3.716 14 N -0.635 5.635 15 C 0.731 3.269 16 O -0.596 6.596 17 N -0.629 5.629 18 C 0.086 3.914 19 C -0.103 4.103 20 C -0.093 4.093 21 H 0.145 0.855 22 C 0.503 3.497 23 O -0.540 6.540 24 O -0.510 6.510 25 C 0.140 3.860 26 N -0.348 5.348 27 H 0.272 0.728 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.211 0.789 31 H 0.168 0.832 32 H 0.419 0.581 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.431 0.569 38 H 0.090 0.910 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.142 -21.707 3.811 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.584 4.584 8 H 0.045 0.955 9 C 0.120 3.880 10 N -0.127 5.127 11 C -0.086 4.086 12 C -0.324 4.324 13 C 0.028 3.972 14 N -0.286 5.286 15 C 0.433 3.567 16 O -0.474 6.474 17 N -0.367 5.367 18 C -0.035 4.035 19 C -0.141 4.141 20 C -0.113 4.113 21 H 0.163 0.837 22 C 0.346 3.654 23 O -0.430 6.430 24 O -0.324 6.324 25 C 0.018 3.982 26 N -0.179 5.179 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.228 0.772 31 H 0.185 0.815 32 H 0.256 0.744 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.293 0.707 38 H 0.108 0.892 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.463 -20.602 4.098 24.424 hybrid contribution 0.211 -0.256 0.075 0.340 sum 12.674 -20.858 4.173 24.761 Atomic orbital electron populations 1.70054 1.08556 1.28764 1.50754 1.25925 0.95775 1.03536 0.93275 0.85616 0.79499 0.77214 0.80051 1.17753 1.20700 1.16238 1.21233 0.90513 0.93720 1.52906 0.95500 1.19889 0.94150 0.74350 0.99651 1.48493 1.34215 1.10108 1.19867 1.23245 0.94219 0.94583 0.96550 1.21720 1.11838 0.97224 1.01625 1.19105 0.97426 0.86397 0.94291 1.41356 1.49398 1.06423 1.31433 1.15148 0.79999 0.79378 0.82221 1.90842 1.45552 1.82940 1.28027 1.47393 1.50515 1.08806 1.30034 1.22429 0.96789 0.97906 0.86418 1.22588 1.04732 0.91831 0.94949 1.22212 0.98644 0.89376 1.01079 0.83715 1.22912 0.76822 0.83850 0.81841 1.90749 1.60556 1.65963 1.25692 1.84522 1.61692 1.46375 1.39762 1.21961 0.94722 0.79893 1.01671 1.77302 1.26040 0.96859 1.17713 0.91913 0.93677 0.90000 0.77189 0.81501 0.74416 0.89645 0.89359 0.86693 0.89407 0.70711 0.89190 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.92 13.96 21.45 0.30 -57.63 16 2 C 0.01 0.77 5.47 84.65 0.46 1.23 16 3 Si 0.96 40.54 27.47 68.60 1.88 42.43 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 7 C -0.55 -31.41 9.79 25.60 0.25 -31.16 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 9 C 0.24 11.04 5.33 85.63 0.46 11.50 16 10 N -0.34 -15.47 3.67 -351.84 -1.29 -16.75 16 11 C 0.06 2.29 11.44 83.52 0.96 3.25 16 12 C -0.29 -11.26 9.60 22.10 0.21 -11.05 16 13 C 0.28 11.39 8.11 133.31 1.08 12.47 16 14 N -0.63 -19.85 5.41 -321.24 -1.74 -21.59 16 15 C 0.73 21.33 8.46 179.05 1.51 22.85 16 16 O -0.60 -21.19 13.73 -3.99 -0.05 -21.24 16 17 N -0.63 -12.34 3.33 -829.76 -2.76 -15.10 16 18 C 0.09 1.06 6.15 86.73 0.53 1.60 16 19 C -0.10 -0.96 6.03 31.78 0.19 -0.76 16 20 C -0.09 -0.95 3.55 -10.16 -0.04 -0.99 16 21 H 0.15 1.02 8.14 -2.38 -0.02 1.00 16 22 C 0.50 6.05 7.63 71.24 0.54 6.59 16 23 O -0.54 -9.70 16.55 21.97 0.36 -9.34 16 24 O -0.51 -4.21 13.41 -51.33 -0.69 -4.90 16 25 C 0.14 2.16 6.35 86.85 0.55 2.71 16 26 N -0.35 -16.21 12.42 -54.44 -0.68 -16.88 16 27 H 0.27 15.39 8.31 -92.70 -0.77 14.61 16 28 H 0.05 2.04 7.20 -2.38 -0.02 2.02 16 29 H 0.08 3.23 7.50 -2.39 -0.02 3.22 16 30 H 0.21 5.66 8.06 -2.91 -0.02 5.64 16 31 H 0.17 6.28 5.91 -2.91 -0.02 6.26 16 32 H 0.42 10.83 7.81 -92.71 -0.72 10.10 16 33 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.09 0.96 7.49 -2.39 -0.02 0.95 16 37 H 0.43 0.10 9.10 -74.05 -0.67 -0.58 16 38 H 0.09 1.53 8.04 -2.39 -0.02 1.51 16 39 H 0.07 1.14 8.03 -2.39 -0.02 1.12 16 Total: -1.00 -83.35 336.68 1.72 -81.62 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.34 Total: 21.14 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 6.72 Total: 18.24 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -6.16 Total: -127.95 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.38 Total: -35.48 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.88 Total: 42.43 kcal Total: -83.35 1.72 -81.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819091205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.258 kcal (2) G-P(sol) polarization free energy of solvation -83.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds