Wall clock time and date at job start Fri Apr 10 2020 17:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46507 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.34966 * 125.97567 * 124.71530 * 10 9 7 12 12 C 1.35241 * 107.85596 * 179.84237 * 11 10 9 13 13 C 1.40405 * 107.87049 * 0.42421 * 12 11 10 14 14 N 1.40193 * 125.97305 * 179.76044 * 13 12 11 15 15 C 1.34773 * 120.00159 * 0.02562 * 14 13 12 16 16 O 1.21588 * 119.99770 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99852 * 180.02562 * 15 14 13 18 18 C 1.47427 * 125.65270 * 0.02562 * 17 15 14 19 19 C 1.54904 * 104.83508 * 204.09281 * 18 17 15 20 20 C 1.55164 * 101.58226 * 322.98810 * 19 18 17 21 21 C 1.47023 * 125.64775 * 179.71130 * 17 15 14 22 22 H 1.09006 * 109.88412 * 59.56133 * 21 17 15 23 23 C 1.50699 * 109.88301 * 298.39461 * 21 17 15 24 24 O 1.20828 * 120.00419 * 341.45499 * 23 21 17 25 25 O 1.34234 * 119.99908 * 161.45158 * 23 21 17 26 26 N 1.31213 * 108.05352 * 359.73740 * 13 12 11 27 27 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 29 29 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 30 30 H 1.08002 * 126.06597 * 0.02562 * 11 10 9 31 31 H 1.08004 * 126.06700 * 180.16333 * 12 11 10 32 32 H 0.97006 * 119.99518 * 179.97438 * 14 13 12 33 33 H 1.08998 * 110.36375 * 322.93459 * 18 17 15 34 34 H 1.09005 * 110.36253 * 85.14126 * 18 17 15 35 35 H 1.09003 * 111.00692 * 81.06129 * 19 18 17 36 36 H 1.08998 * 111.00741 * 204.91929 * 19 18 17 37 37 H 1.08996 * 110.71968 * 153.86387 * 20 19 18 38 38 H 1.08991 * 110.72070 * 276.96472 * 20 19 18 39 39 H 0.96697 * 116.99824 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2030 -3.6128 0.0028 11 6 2.2495 -4.6180 0.9022 12 6 3.2630 -5.4419 0.5512 13 6 3.8663 -4.9157 -0.6022 14 7 4.9592 -5.4678 -1.2849 15 6 5.5250 -6.6076 -0.8411 16 8 5.0878 -7.1569 0.1517 17 7 6.5760 -7.1381 -1.4971 18 6 7.2051 -6.5783 -2.7072 19 6 7.8858 -7.7875 -3.3958 20 6 8.3944 -8.5965 -2.1733 21 6 7.2892 -8.3674 -1.1207 22 1 6.5992 -9.2112 -1.1208 23 6 7.9046 -8.2051 0.2454 24 8 8.0640 -7.1007 0.7089 25 8 8.2755 -9.2875 0.9473 26 7 3.2280 -3.8170 -0.9298 27 1 -0.4850 0.8401 0.0004 28 1 0.6281 -2.5552 0.8979 29 1 0.6206 -2.5586 -0.8820 30 1 1.5920 -4.7438 1.7498 31 1 3.5587 -6.3424 1.0690 32 1 5.3077 -5.0297 -2.0771 33 1 6.4490 -6.1451 -3.3619 34 1 7.9468 -5.8270 -2.4361 35 1 7.1643 -8.3651 -3.9737 36 1 8.7164 -7.4634 -4.0227 37 1 8.4817 -9.6545 -2.4204 38 1 9.3483 -8.2041 -1.8211 39 1 8.6652 -9.1333 1.8187 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821324849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:00 Heat of formation + Delta-G solvation = -20.935219 kcal Electronic energy + Delta-G solvation = -25062.035015 eV Core-core repulsion = 21200.322789 eV Total energy + Delta-G solvation = -3861.712226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24944 -40.42442 -39.43693 -37.69926 -36.19648 -34.74092 -33.37710 -32.07335 -30.72954 -30.15047 -29.23330 -26.64449 -24.93373 -23.36102 -22.58619 -21.90805 -20.86184 -20.03152 -19.27197 -18.50351 -18.10135 -17.16203 -16.61451 -16.51504 -16.00736 -15.77760 -15.22964 -14.98456 -14.77001 -14.20730 -13.90954 -13.78359 -13.58296 -13.40332 -12.80750 -12.73620 -12.36607 -12.27194 -12.19529 -11.80585 -11.75002 -11.65100 -11.43491 -11.02629 -10.87553 -10.71605 -10.41424 -10.23602 -10.09962 -9.69025 -9.47105 -9.07550 -8.60927 -8.07689 -7.39179 -6.21966 -4.26788 1.90803 2.14660 2.58685 2.83694 3.14805 3.25659 3.31190 3.36449 3.43838 3.85263 3.91333 4.02879 4.19214 4.35713 4.44986 4.68814 4.86546 4.99948 5.13113 5.13831 5.21394 5.33163 5.38652 5.51199 5.63512 5.77021 5.83614 6.28613 6.31478 6.56590 6.60699 6.82205 6.98311 7.10788 7.49392 7.70817 7.72189 7.79752 7.94980 8.09403 8.52214 8.68353 8.83546 9.38715 10.86728 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.002929 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.775658 B = 9557.690887 C = 9863.559953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.259 3.741 10 N -0.320 5.320 11 C 0.052 3.948 12 C -0.285 4.285 13 C 0.275 3.725 14 N -0.637 5.637 15 C 0.739 3.261 16 O -0.559 6.559 17 N -0.621 5.621 18 C 0.092 3.908 19 C -0.128 4.128 20 C -0.118 4.118 21 C 0.171 3.829 22 H 0.114 0.886 23 C 0.469 3.531 24 O -0.495 6.495 25 O -0.517 6.517 26 N -0.306 5.306 27 H 0.267 0.733 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.407 0.593 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.762 -19.494 -5.937 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.317 4.317 13 C 0.022 3.978 14 N -0.286 5.286 15 C 0.440 3.560 16 O -0.434 6.434 17 N -0.361 5.361 18 C -0.030 4.030 19 C -0.166 4.166 20 C -0.156 4.156 21 C 0.064 3.936 22 H 0.132 0.868 23 C 0.308 3.692 24 O -0.381 6.381 25 O -0.329 6.329 26 N -0.137 5.137 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.185 0.815 31 H 0.177 0.823 32 H 0.242 0.758 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 15.889 -18.407 -6.226 25.100 hybrid contribution 0.858 0.778 0.881 1.455 sum 16.747 -17.628 -5.346 24.895 Atomic orbital electron populations 1.69922 1.06035 1.27587 1.49888 1.24946 0.94981 0.99534 0.94632 0.86326 0.79690 0.82133 0.78347 1.20345 1.20993 1.19712 1.21274 0.94025 0.89417 1.51910 0.91301 1.19735 0.85606 0.81276 0.99250 1.49061 1.23386 1.19930 1.17821 1.22540 1.00340 0.90266 0.96660 1.21494 1.02222 1.06431 1.01521 1.18756 0.90620 0.94110 0.94341 1.41269 1.31728 1.24557 1.31085 1.14986 0.78772 0.80252 0.81995 1.90877 1.64210 1.62429 1.25855 1.47278 1.31835 1.27140 1.29826 1.22459 0.97851 0.96962 0.85740 1.22792 1.01128 0.95913 0.96750 1.22627 0.96660 1.02758 0.93532 1.20840 0.94910 0.89183 0.88701 0.86808 1.23767 0.75214 0.82220 0.87973 1.90763 1.50273 1.27159 1.69859 1.84485 1.74797 1.38765 1.34839 1.77320 1.03907 1.16083 1.16414 0.92353 0.92537 0.93715 0.81482 0.82303 0.75796 0.89754 0.90651 0.89587 0.88869 0.88091 0.89891 0.73064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.96 9.24 -34.44 -0.32 -15.27 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.26 6.70 6.26 -5.19 -0.03 6.67 16 10 N -0.32 -7.67 3.67 -62.56 -0.23 -7.90 16 11 C 0.05 1.08 11.44 -17.24 -0.20 0.89 16 12 C -0.29 -6.02 9.61 -39.83 -0.38 -6.40 16 13 C 0.28 5.87 8.11 -154.36 -1.25 4.61 16 14 N -0.64 -10.86 5.41 -15.51 -0.08 -10.95 16 15 C 0.74 12.17 7.85 -86.93 -0.68 11.49 16 16 O -0.56 -10.96 13.29 5.29 0.07 -10.89 16 17 N -0.62 -7.28 2.75 -170.00 -0.47 -7.75 16 18 C 0.09 0.70 6.57 -2.53 -0.02 0.68 16 19 C -0.13 -0.55 7.09 -24.58 -0.17 -0.73 16 20 C -0.12 -0.60 6.47 -24.89 -0.16 -0.76 16 21 C 0.17 1.61 3.37 -68.10 -0.23 1.38 16 22 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 23 C 0.47 5.53 6.78 36.00 0.24 5.78 16 24 O -0.50 -7.96 16.90 -18.75 -0.32 -8.27 16 25 O -0.52 -4.48 13.42 -39.27 -0.53 -5.01 16 26 N -0.31 -7.29 12.42 31.44 0.39 -6.90 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.06 1.43 8.07 -51.93 -0.42 1.02 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.17 2.85 8.06 -52.49 -0.42 2.43 16 31 H 0.16 3.33 5.91 -52.48 -0.31 3.02 16 32 H 0.41 5.72 7.30 -40.82 -0.30 5.43 16 33 H 0.08 0.55 7.30 -51.93 -0.38 0.17 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.42 7.84 -51.93 -0.41 0.01 16 39 H 0.41 2.08 9.10 45.56 0.41 2.49 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -37.65 338.79 -7.55 -45.20 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.90 Total: 5.64 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -3.30 Total: 9.96 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.35 Total: -58.39 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.77 Total: -24.17 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.65 -7.55 -45.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.261 kcal (2) G-P(sol) polarization free energy of solvation -37.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds