Wall clock time and date at job start Fri Apr 10 2020 17:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46507 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.34966 * 125.97567 * 124.71530 * 10 9 7 12 12 C 1.35241 * 107.85596 * 179.84237 * 11 10 9 13 13 C 1.40405 * 107.87049 * 0.42421 * 12 11 10 14 14 N 1.40193 * 125.97305 * 179.76044 * 13 12 11 15 15 C 1.34773 * 120.00159 * 0.02562 * 14 13 12 16 16 O 1.21588 * 119.99770 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99852 * 180.02562 * 15 14 13 18 18 C 1.47427 * 125.65270 * 0.02562 * 17 15 14 19 19 C 1.54904 * 104.83508 * 204.09281 * 18 17 15 20 20 C 1.55164 * 101.58226 * 322.98810 * 19 18 17 21 21 C 1.47023 * 125.64775 * 179.71130 * 17 15 14 22 22 H 1.09006 * 109.88412 * 59.56133 * 21 17 15 23 23 C 1.50699 * 109.88301 * 298.39461 * 21 17 15 24 24 O 1.20828 * 120.00419 * 341.45499 * 23 21 17 25 25 O 1.34234 * 119.99908 * 161.45158 * 23 21 17 26 26 N 1.31213 * 108.05352 * 359.73740 * 13 12 11 27 27 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 29 29 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 30 30 H 1.08002 * 126.06597 * 0.02562 * 11 10 9 31 31 H 1.08004 * 126.06700 * 180.16333 * 12 11 10 32 32 H 0.97006 * 119.99518 * 179.97438 * 14 13 12 33 33 H 1.08998 * 110.36375 * 322.93459 * 18 17 15 34 34 H 1.09005 * 110.36253 * 85.14126 * 18 17 15 35 35 H 1.09003 * 111.00692 * 81.06129 * 19 18 17 36 36 H 1.08998 * 111.00741 * 204.91929 * 19 18 17 37 37 H 1.08996 * 110.71968 * 153.86387 * 20 19 18 38 38 H 1.08991 * 110.72070 * 276.96472 * 20 19 18 39 39 H 0.96697 * 116.99824 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2030 -3.6128 0.0028 11 6 2.2495 -4.6180 0.9022 12 6 3.2630 -5.4419 0.5512 13 6 3.8663 -4.9157 -0.6022 14 7 4.9592 -5.4678 -1.2849 15 6 5.5250 -6.6076 -0.8411 16 8 5.0878 -7.1569 0.1517 17 7 6.5760 -7.1381 -1.4971 18 6 7.2051 -6.5783 -2.7072 19 6 7.8858 -7.7875 -3.3958 20 6 8.3944 -8.5965 -2.1733 21 6 7.2892 -8.3674 -1.1207 22 1 6.5992 -9.2112 -1.1208 23 6 7.9046 -8.2051 0.2454 24 8 8.0640 -7.1007 0.7089 25 8 8.2755 -9.2875 0.9473 26 7 3.2280 -3.8170 -0.9298 27 1 -0.4850 0.8401 0.0004 28 1 0.6281 -2.5552 0.8979 29 1 0.6206 -2.5586 -0.8820 30 1 1.5920 -4.7438 1.7498 31 1 3.5587 -6.3424 1.0690 32 1 5.3077 -5.0297 -2.0771 33 1 6.4490 -6.1451 -3.3619 34 1 7.9468 -5.8270 -2.4361 35 1 7.1643 -8.3651 -3.9737 36 1 8.7164 -7.4634 -4.0227 37 1 8.4817 -9.6545 -2.4204 38 1 9.3483 -8.2041 -1.8211 39 1 8.6652 -9.1333 1.8187 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821324849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:59 Heat of formation + Delta-G solvation = -48.157392 kcal Electronic energy + Delta-G solvation = -25063.215457 eV Core-core repulsion = 21200.322789 eV Total energy + Delta-G solvation = -3862.892668 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.42001 -41.80598 -40.59974 -38.60882 -37.08672 -36.28627 -35.32225 -33.28616 -32.15622 -31.06363 -30.78347 -28.55867 -25.84657 -24.98364 -23.80029 -22.68309 -22.26407 -21.40599 -20.54689 -19.35125 -19.23955 -18.69885 -18.16906 -17.91328 -17.28329 -16.76826 -16.66113 -16.39501 -15.92392 -15.74535 -15.51193 -14.67691 -14.44306 -14.30096 -14.21947 -14.15345 -13.84603 -13.70908 -13.39476 -12.98220 -12.91082 -12.74600 -12.56908 -12.30876 -12.23127 -12.10702 -11.91390 -11.69736 -11.52540 -11.43066 -11.20762 -10.73045 -10.06040 -9.76015 -9.10024 -8.33869 -6.47969 0.84651 1.01932 1.17859 1.37385 1.37948 1.49686 1.58331 1.86579 2.11012 2.34475 2.38722 2.83378 2.97738 3.40443 3.51717 3.92632 4.00329 4.13213 4.21562 4.25830 4.46067 4.62016 4.64147 4.79098 4.82135 4.89327 4.90532 4.99892 5.05092 5.10712 5.25751 5.29782 5.53848 5.56289 5.66191 5.81875 5.89880 6.26153 6.50965 6.64702 6.92201 7.03979 7.21899 7.26091 8.73796 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.002929 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.775658 B = 9557.690887 C = 9863.559953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.273 3.727 10 N -0.343 5.343 11 C 0.059 3.941 12 C -0.294 4.294 13 C 0.283 3.717 14 N -0.632 5.632 15 C 0.732 3.268 16 O -0.597 6.597 17 N -0.616 5.616 18 C 0.078 3.922 19 C -0.113 4.113 20 C -0.107 4.107 21 C 0.158 3.842 22 H 0.123 0.877 23 C 0.469 3.531 24 O -0.548 6.548 25 O -0.506 6.506 26 N -0.344 5.344 27 H 0.273 0.727 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.203 0.797 31 H 0.163 0.837 32 H 0.419 0.581 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.433 -20.493 -6.985 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.069 0.931 9 C 0.154 3.846 10 N -0.125 5.125 11 C -0.089 4.089 12 C -0.326 4.326 13 C 0.027 3.973 14 N -0.283 5.283 15 C 0.433 3.567 16 O -0.474 6.474 17 N -0.355 5.355 18 C -0.043 4.043 19 C -0.151 4.151 20 C -0.144 4.144 21 C 0.052 3.948 22 H 0.141 0.859 23 C 0.311 3.689 24 O -0.437 6.437 25 O -0.319 6.319 26 N -0.175 5.175 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.220 0.780 31 H 0.180 0.820 32 H 0.257 0.743 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.103 0.897 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 17.618 -19.464 -7.312 27.252 hybrid contribution 0.429 0.922 1.225 1.592 sum 18.046 -18.541 -6.087 26.580 Atomic orbital electron populations 1.69992 1.07166 1.28799 1.49897 1.25730 0.95856 1.02672 0.93842 0.85349 0.78294 0.78149 0.78630 1.19618 1.19554 1.19972 1.21401 0.93334 0.91065 1.52933 0.93129 1.19360 0.85614 0.81356 0.98247 1.48850 1.23973 1.20502 1.19164 1.23137 1.00334 0.88819 0.96637 1.21646 1.02502 1.06657 1.01758 1.19060 0.90810 0.93159 0.94224 1.41285 1.30805 1.24950 1.31305 1.15221 0.79675 0.79850 0.81931 1.90827 1.65722 1.63318 1.27574 1.47375 1.30323 1.27536 1.30219 1.22838 0.98182 0.98717 0.84554 1.22826 1.01885 0.94039 0.96358 1.22733 0.94830 1.04864 0.92012 1.21351 0.96263 0.88256 0.88900 0.85903 1.24286 0.74121 0.81817 0.88651 1.90745 1.52735 1.29067 1.71192 1.84455 1.74283 1.37416 1.35762 1.77241 1.04994 1.17696 1.17563 0.91780 0.92261 0.95816 0.78022 0.82009 0.74339 0.88869 0.90785 0.88296 0.86217 0.84941 0.89728 0.71296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.73 13.29 21.45 0.28 -52.45 16 2 C 0.02 1.09 5.46 84.66 0.46 1.55 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.55 -31.73 9.24 25.60 0.24 -31.49 16 8 H 0.05 3.05 7.81 -2.92 -0.02 3.03 16 9 C 0.27 14.50 6.26 85.63 0.54 15.04 16 10 N -0.34 -16.78 3.67 -351.83 -1.29 -18.07 16 11 C 0.06 2.48 11.44 83.52 0.96 3.44 16 12 C -0.29 -12.55 9.61 22.11 0.21 -12.34 16 13 C 0.28 12.24 8.11 133.31 1.08 13.32 16 14 N -0.63 -21.73 5.41 -321.24 -1.74 -23.47 16 15 C 0.73 24.14 7.85 179.06 1.41 25.54 16 16 O -0.60 -23.70 13.29 -3.99 -0.05 -23.75 16 17 N -0.62 -13.83 2.75 -810.01 -2.23 -16.06 16 18 C 0.08 1.03 6.57 86.85 0.57 1.60 16 19 C -0.11 -0.55 7.09 31.99 0.23 -0.33 16 20 C -0.11 -0.71 6.47 31.79 0.21 -0.50 16 21 C 0.16 2.71 3.37 44.60 0.15 2.86 16 22 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 23 C 0.47 10.72 6.78 71.24 0.48 11.20 16 24 O -0.55 -17.80 16.90 21.96 0.37 -17.43 16 25 O -0.51 -8.08 13.42 -51.46 -0.69 -8.77 16 26 N -0.34 -16.77 12.42 -54.43 -0.68 -17.44 16 27 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.06 3.07 8.07 -2.39 -0.02 3.05 16 29 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.20 6.69 8.06 -2.91 -0.02 6.66 16 31 H 0.16 6.85 5.91 -2.91 -0.02 6.83 16 32 H 0.42 11.81 7.30 -92.70 -0.68 11.13 16 33 H 0.09 1.06 7.30 -2.39 -0.02 1.04 16 34 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.12 0.05 8.14 -2.39 -0.02 0.04 16 37 H 0.13 0.12 8.14 -2.39 -0.02 0.11 16 38 H 0.08 0.59 7.84 -2.39 -0.02 0.57 16 39 H 0.43 3.85 9.10 -74.06 -0.67 3.18 16 Total: -1.00 -83.64 338.79 2.29 -81.35 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.24 Total: 19.78 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 6.53 Total: 29.90 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -5.65 Total: -127.49 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.37 Total: -49.96 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -83.64 2.29 -81.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.192 kcal (2) G-P(sol) polarization free energy of solvation -83.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds