Wall clock time and date at job start Fri Apr 10 2020 17:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35240 * 126.06535 * 2 1 4 4 C 1.40411 * 107.86277 * 179.97438 * 3 2 1 5 5 N 1.40154 * 125.97095 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00397 * 359.97438 * 5 4 3 7 7 O 1.21302 * 119.99563 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00508 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.39750 * 320.00417 * 8 6 5 10 10 C 1.53132 * 109.39363 * 79.82365 * 8 6 5 11 11 C 1.53436 * 108.39827 * 168.18497 * 10 8 6 12 12 O 1.45426 * 108.03415 * 298.15880 * 11 10 8 13 13 C 1.34208 * 117.18456 * 46.47796 * 12 11 10 14 14 O 1.21520 * 118.45945 * 163.20457 * 13 12 11 15 15 N 1.33723 * 123.08201 * 343.18191 * 13 12 11 16 16 N 1.31215 * 108.05423 * 359.97438 * 4 3 2 17 17 N 1.34961 * 126.06883 * 179.97438 * 2 1 3 18 18 C 1.46502 * 125.98015 * 0.07985 * 17 2 1 19 19 C 1.50705 * 109.46749 * 269.98136 * 18 17 2 20 20 H 1.07998 * 120.00236 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99716 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00330 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99648 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46973 * 60.00214 * 23 21 19 25 25 H 1.48500 * 109.47058 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47482 * 300.00026 * 23 21 19 27 27 H 1.08996 * 109.47394 * 270.04635 * 1 2 3 28 28 H 1.09005 * 109.47129 * 30.04448 * 1 2 3 29 29 H 1.08998 * 109.46900 * 150.04459 * 1 2 3 30 30 H 1.08000 * 126.06686 * 359.97438 * 3 2 1 31 31 H 0.96996 * 120.00301 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.68933 * 287.83548 * 10 8 6 33 33 H 1.09005 * 109.68828 * 48.39715 * 10 8 6 34 34 H 1.09002 * 109.73719 * 178.54349 * 11 10 8 35 35 H 1.08997 * 109.84233 * 57.83100 * 11 10 8 36 36 H 0.97005 * 118.52679 * 182.33173 * 15 13 12 37 37 H 1.09004 * 109.47134 * 29.97351 * 18 17 2 38 38 H 1.08995 * 109.47708 * 149.97948 * 18 17 2 39 39 H 0.96999 * 120.00319 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 0.0006 5 7 4.7734 1.4750 0.0013 6 6 4.6367 2.8158 0.0009 7 8 3.5300 3.3125 0.0005 8 6 5.8585 3.6979 0.0023 9 1 6.6122 3.2713 0.6640 10 6 6.4219 3.7884 -1.4188 11 6 7.4687 4.9096 -1.4542 12 8 6.8015 6.1591 -1.1250 13 6 5.9761 6.1532 -0.0667 14 8 5.6509 7.2181 0.4200 15 7 5.4944 5.0304 0.4769 16 7 3.6337 -0.6575 0.0015 17 7 2.3016 -1.0909 0.0005 18 6 1.8501 -2.4846 -0.0005 19 6 1.6941 -2.9631 1.4200 20 1 1.9102 -2.2959 2.2413 21 6 1.2756 -4.2526 1.6710 22 7 1.0121 -5.0649 0.6709 23 14 1.0830 -4.8459 3.4318 24 1 0.0823 -4.0012 4.1321 25 1 0.6240 -6.2582 3.4308 26 1 2.3889 -4.7498 4.1322 27 1 -0.3634 0.0008 1.0276 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3633 -0.8904 -0.5131 30 1 1.9718 2.1211 -0.0004 31 1 5.6583 1.0778 0.0013 32 1 6.8902 2.8420 -1.6892 33 1 5.6175 4.0138 -2.1191 34 1 7.9034 4.9760 -2.4516 35 1 8.2523 4.7073 -0.7241 36 1 4.8750 5.1041 1.2198 37 1 0.8918 -2.5557 -0.5151 38 1 2.5851 -3.1044 -0.5141 39 1 0.7173 -5.9720 0.8475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860521769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:04 Heat of formation + Delta-G solvation = -31.400065 kcal Electronic energy + Delta-G solvation = -24824.664667 eV Core-core repulsion = 20962.498651 eV Total energy + Delta-G solvation = -3862.166016 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.61970 -40.78161 -39.49378 -37.47630 -35.82450 -35.09561 -33.49979 -32.14758 -31.50911 -30.94929 -28.03237 -26.60291 -26.41044 -24.57040 -23.23513 -21.90164 -20.54835 -20.04497 -19.56930 -18.72108 -17.92991 -17.37604 -16.77057 -16.41868 -16.18822 -15.56654 -15.42169 -15.17470 -14.99933 -14.61713 -14.42306 -14.24498 -13.94322 -13.17692 -12.88186 -12.64486 -12.55647 -12.39099 -12.30625 -12.09462 -11.78217 -11.49405 -11.21710 -11.14279 -10.89584 -10.83908 -10.62035 -10.33701 -10.23042 -9.95592 -9.66488 -9.55581 -8.70871 -8.10170 -7.62550 -6.32689 -4.40735 1.88512 2.16748 2.29264 2.66949 2.73900 3.04884 3.18291 3.22647 3.26140 3.49465 3.57432 3.85626 4.03987 4.22859 4.24640 4.33131 4.55742 4.66731 4.91504 5.01338 5.26029 5.28835 5.44850 5.56415 5.78165 6.02443 6.06110 6.32941 6.35483 6.39637 6.54138 6.81859 6.95511 7.22418 7.24603 7.42991 7.59016 7.76992 7.80304 7.90216 7.93308 8.49430 8.65816 9.25967 10.74737 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.002657 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.819469 B =10534.951692 C =10633.343609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.094 3.906 3 C -0.290 4.290 4 C 0.258 3.742 5 N -0.622 5.622 6 C 0.509 3.491 7 O -0.498 6.498 8 C 0.125 3.875 9 H 0.110 0.890 10 C -0.169 4.169 11 C 0.063 3.937 12 O -0.342 6.342 13 C 0.664 3.336 14 O -0.529 6.529 15 N -0.710 5.710 16 N -0.316 5.316 17 N -0.314 5.314 18 C 0.258 3.742 19 C -0.539 4.539 20 H 0.064 0.936 21 C 0.067 3.933 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.159 0.841 31 H 0.412 0.588 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.426 0.574 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.224 13.745 -4.493 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.038 4.038 3 C -0.321 4.321 4 C 0.006 3.994 5 N -0.270 5.270 6 C 0.292 3.708 7 O -0.370 6.370 8 C 0.016 3.984 9 H 0.128 0.872 10 C -0.207 4.207 11 C -0.011 4.011 12 O -0.253 6.253 13 C 0.417 3.583 14 O -0.414 6.414 15 N -0.379 5.379 16 N -0.147 5.147 17 N -0.096 5.096 18 C 0.141 3.859 19 C -0.577 4.577 20 H 0.082 0.918 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.200 1.200 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.176 0.824 31 H 0.247 0.753 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.140 0.860 35 H 0.102 0.898 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.134 13.483 -4.674 18.099 hybrid contribution -0.318 -0.474 1.259 1.383 sum 10.816 13.009 -3.414 17.259 Atomic orbital electron populations 1.20354 0.87746 1.02944 1.03311 1.21087 0.95019 0.87091 1.00556 1.21226 0.89671 0.99824 1.21402 1.18922 0.86970 0.89628 1.03869 1.42310 1.07890 1.04682 1.72129 1.20474 0.90985 0.81888 0.77492 1.90732 1.26043 1.73646 1.46560 1.20965 0.95346 0.84042 0.98094 0.87197 1.22580 1.00927 1.02208 0.95032 1.23505 0.93495 0.80144 1.03969 1.86737 1.56827 1.36596 1.45156 1.17729 0.78268 0.84009 0.78302 1.91064 1.61922 1.29249 1.59129 1.45107 1.50949 1.03360 1.38490 1.77257 1.00114 1.08322 1.28992 1.49034 1.00877 1.07908 1.51770 1.19723 0.96042 0.71130 0.99036 1.21262 1.47164 0.98012 0.91270 0.91795 1.24922 0.94567 0.96038 0.98171 1.69899 1.44643 1.07229 1.31123 0.86404 0.78836 0.77744 0.83647 1.19897 1.20907 1.19966 0.90299 0.90738 0.90752 0.82369 0.75253 0.86706 0.88387 0.85979 0.89798 0.73414 0.92701 0.92934 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 10.11 36.01 0.36 -1.02 16 2 C 0.09 1.87 6.92 -82.28 -0.57 1.30 16 3 C -0.29 -5.52 9.52 -39.83 -0.38 -5.89 16 4 C 0.26 4.70 8.11 -154.40 -1.25 3.45 16 5 N -0.62 -7.68 5.45 -11.13 -0.06 -7.74 16 6 C 0.51 5.75 6.96 -10.99 -0.08 5.67 16 7 O -0.50 -7.61 13.53 5.54 0.07 -7.54 16 8 C 0.13 0.87 3.54 -69.25 -0.24 0.62 16 9 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 10 C -0.17 -0.82 5.55 -26.44 -0.15 -0.96 16 11 C 0.06 0.28 7.20 37.38 0.27 0.55 16 12 O -0.34 -3.40 10.49 -39.27 -0.41 -3.81 16 13 C 0.66 7.92 8.55 53.59 0.46 8.38 16 14 O -0.53 -8.52 17.95 -19.41 -0.35 -8.87 16 15 N -0.71 -6.74 4.85 -60.48 -0.29 -7.03 16 16 N -0.32 -6.72 12.59 31.44 0.40 -6.33 16 17 N -0.31 -7.02 3.59 -58.32 -0.21 -7.23 16 18 C 0.26 6.34 5.99 -5.19 -0.03 6.31 16 19 C -0.54 -14.35 9.39 -34.44 -0.32 -14.67 16 20 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.38 13.29 55.43 0.74 -23.65 16 23 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.22 7.07 -51.93 -0.37 0.85 16 30 H 0.16 2.93 5.92 -52.49 -0.31 2.62 16 31 H 0.41 3.61 8.82 -40.82 -0.36 3.25 16 32 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.43 4.23 8.52 -40.82 -0.35 3.88 16 37 H 0.06 1.34 7.04 -51.93 -0.37 0.97 16 38 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -35.30 338.47 -6.74 -42.04 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.68 Total: 4.13 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.03 Total: 5.40 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.57 Total: -51.98 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.69 Total: -20.21 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.30 -6.74 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860521769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.643 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds