Wall clock time and date at job start Fri Apr 10 2020 17:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35240 * 126.06535 * 2 1 4 4 C 1.40411 * 107.86277 * 179.97438 * 3 2 1 5 5 N 1.40154 * 125.97095 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00397 * 359.97438 * 5 4 3 7 7 O 1.21302 * 119.99563 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00508 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.39750 * 320.00417 * 8 6 5 10 10 C 1.53132 * 109.39363 * 79.82365 * 8 6 5 11 11 C 1.53436 * 108.39827 * 168.18497 * 10 8 6 12 12 O 1.45426 * 108.03415 * 298.15880 * 11 10 8 13 13 C 1.34208 * 117.18456 * 46.47796 * 12 11 10 14 14 O 1.21520 * 118.45945 * 163.20457 * 13 12 11 15 15 N 1.33723 * 123.08201 * 343.18191 * 13 12 11 16 16 N 1.31215 * 108.05423 * 359.97438 * 4 3 2 17 17 N 1.34961 * 126.06883 * 179.97438 * 2 1 3 18 18 C 1.46502 * 125.98015 * 0.07985 * 17 2 1 19 19 C 1.50705 * 109.46749 * 269.98136 * 18 17 2 20 20 H 1.07998 * 120.00236 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99716 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00330 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99648 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46973 * 60.00214 * 23 21 19 25 25 H 1.48500 * 109.47058 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47482 * 300.00026 * 23 21 19 27 27 H 1.08996 * 109.47394 * 270.04635 * 1 2 3 28 28 H 1.09005 * 109.47129 * 30.04448 * 1 2 3 29 29 H 1.08998 * 109.46900 * 150.04459 * 1 2 3 30 30 H 1.08000 * 126.06686 * 359.97438 * 3 2 1 31 31 H 0.96996 * 120.00301 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.68933 * 287.83548 * 10 8 6 33 33 H 1.09005 * 109.68828 * 48.39715 * 10 8 6 34 34 H 1.09002 * 109.73719 * 178.54349 * 11 10 8 35 35 H 1.08997 * 109.84233 * 57.83100 * 11 10 8 36 36 H 0.97005 * 118.52679 * 182.33173 * 15 13 12 37 37 H 1.09004 * 109.47134 * 29.97351 * 18 17 2 38 38 H 1.08995 * 109.47708 * 149.97948 * 18 17 2 39 39 H 0.96999 * 120.00319 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 0.0006 5 7 4.7734 1.4750 0.0013 6 6 4.6367 2.8158 0.0009 7 8 3.5300 3.3125 0.0005 8 6 5.8585 3.6979 0.0023 9 1 6.6122 3.2713 0.6640 10 6 6.4219 3.7884 -1.4188 11 6 7.4687 4.9096 -1.4542 12 8 6.8015 6.1591 -1.1250 13 6 5.9761 6.1532 -0.0667 14 8 5.6509 7.2181 0.4200 15 7 5.4944 5.0304 0.4769 16 7 3.6337 -0.6575 0.0015 17 7 2.3016 -1.0909 0.0005 18 6 1.8501 -2.4846 -0.0005 19 6 1.6941 -2.9631 1.4200 20 1 1.9102 -2.2959 2.2413 21 6 1.2756 -4.2526 1.6710 22 7 1.0121 -5.0649 0.6709 23 14 1.0830 -4.8459 3.4318 24 1 0.0823 -4.0012 4.1321 25 1 0.6240 -6.2582 3.4308 26 1 2.3889 -4.7498 4.1322 27 1 -0.3634 0.0008 1.0276 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3633 -0.8904 -0.5131 30 1 1.9718 2.1211 -0.0004 31 1 5.6583 1.0778 0.0013 32 1 6.8902 2.8420 -1.6892 33 1 5.6175 4.0138 -2.1191 34 1 7.9034 4.9760 -2.4516 35 1 8.2523 4.7073 -0.7241 36 1 4.8750 5.1041 1.2198 37 1 0.8918 -2.5557 -0.5151 38 1 2.5851 -3.1044 -0.5141 39 1 0.7173 -5.9720 0.8475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860521769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:04 Heat of formation + Delta-G solvation = -58.514528 kcal Electronic energy + Delta-G solvation = -24825.840439 eV Core-core repulsion = 20962.498651 eV Total energy + Delta-G solvation = -3863.341787 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.54641 -42.05616 -40.59576 -38.32485 -36.69229 -36.28719 -35.34074 -33.23623 -32.69820 -32.45856 -29.11420 -28.02688 -27.85527 -25.30232 -24.91637 -23.10432 -21.35525 -21.15914 -20.90329 -19.42011 -18.89646 -18.75592 -18.30435 -17.63144 -17.16473 -17.00908 -16.58270 -16.20862 -15.99795 -15.72062 -15.64624 -15.30396 -14.88063 -14.67576 -14.30110 -13.83122 -13.74106 -13.58522 -13.47582 -13.16384 -13.10757 -12.86669 -12.69421 -12.66314 -12.24731 -12.14719 -11.84852 -11.65660 -11.55590 -11.39546 -11.10753 -10.73481 -10.44070 -9.61624 -9.18081 -8.33272 -6.50717 0.79988 1.09978 1.29663 1.39551 1.39908 1.49142 1.54843 1.68540 2.13800 2.20622 2.36178 2.46702 2.97105 3.22523 3.37296 3.72702 3.83498 3.89500 4.14974 4.22870 4.30093 4.41609 4.66430 4.69799 4.72210 4.87363 4.89027 4.92667 4.95478 4.99383 5.11663 5.23473 5.53141 5.58616 5.80542 5.89982 6.19461 6.22984 6.51351 6.60835 6.85522 6.94444 7.05615 7.20393 8.72632 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.002657 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.819469 B =10534.951692 C =10633.343609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.086 3.914 3 C -0.300 4.300 4 C 0.273 3.727 5 N -0.610 5.610 6 C 0.513 3.487 7 O -0.538 6.538 8 C 0.133 3.867 9 H 0.159 0.841 10 C -0.166 4.166 11 C 0.058 3.942 12 O -0.359 6.359 13 C 0.667 3.333 14 O -0.584 6.584 15 N -0.706 5.706 16 N -0.350 5.350 17 N -0.342 5.342 18 C 0.275 3.725 19 C -0.554 4.554 20 H 0.050 0.950 21 C 0.024 3.976 22 N -0.918 5.918 23 Si 0.969 3.031 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.165 0.835 31 H 0.431 0.569 32 H 0.154 0.846 33 H 0.077 0.923 34 H 0.150 0.850 35 H 0.113 0.887 36 H 0.422 0.578 37 H 0.051 0.949 38 H 0.027 0.973 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.855 13.913 -4.188 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C -0.330 4.330 4 C 0.018 3.982 5 N -0.260 5.260 6 C 0.298 3.702 7 O -0.412 6.412 8 C 0.025 3.975 9 H 0.176 0.824 10 C -0.204 4.204 11 C -0.015 4.015 12 O -0.270 6.270 13 C 0.421 3.579 14 O -0.473 6.473 15 N -0.373 5.373 16 N -0.181 5.181 17 N -0.124 5.124 18 C 0.156 3.844 19 C -0.592 4.592 20 H 0.069 0.931 21 C -0.177 4.177 22 N -0.556 5.556 23 Si 0.793 3.207 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.199 1.199 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.182 0.818 31 H 0.271 0.729 32 H 0.172 0.828 33 H 0.096 0.904 34 H 0.167 0.833 35 H 0.131 0.869 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.813 13.632 -4.397 19.219 hybrid contribution -0.756 -0.461 1.075 1.392 sum 12.057 13.172 -3.322 18.163 Atomic orbital electron populations 1.20470 0.85671 1.04154 1.03890 1.21716 0.96576 0.86618 0.99484 1.21412 0.90227 0.99729 1.21664 1.19254 0.88681 0.89192 1.01045 1.42386 1.07199 1.04563 1.71883 1.21331 0.91916 0.81451 0.75464 1.90717 1.28245 1.74194 1.48057 1.21291 0.93650 0.81748 1.00832 0.82400 1.22680 1.00623 1.04384 0.92728 1.24003 0.93373 0.77684 1.06442 1.86704 1.56606 1.39797 1.43908 1.17771 0.78232 0.83673 0.78254 1.91015 1.63899 1.31244 1.61103 1.45123 1.50333 1.03922 1.37888 1.77178 0.99867 1.09894 1.31134 1.48786 1.01853 1.07472 1.54284 1.19243 0.94967 0.72416 0.97734 1.21412 1.47628 0.98344 0.91828 0.93137 1.25707 0.93950 0.95979 1.02087 1.69984 1.44986 1.07616 1.33020 0.85438 0.78785 0.77631 0.78843 1.19176 1.19894 1.19897 0.89915 0.87724 0.91299 0.81804 0.72933 0.82804 0.90383 0.83259 0.86925 0.73876 0.93163 0.95520 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.69 10.11 71.24 0.72 -1.97 16 2 C 0.09 3.44 6.92 41.39 0.29 3.73 16 3 C -0.30 -11.25 9.52 22.11 0.21 -11.04 16 4 C 0.27 9.68 8.11 133.33 1.08 10.76 16 5 N -0.61 -13.62 5.45 -307.51 -1.68 -15.29 16 6 C 0.51 10.43 6.96 87.66 0.61 11.04 16 7 O -0.54 -15.89 13.53 -3.10 -0.04 -15.93 16 8 C 0.13 1.39 3.54 44.37 0.16 1.54 16 9 H 0.16 0.30 8.14 -2.39 -0.02 0.28 16 10 C -0.17 -0.95 5.55 30.78 0.17 -0.78 16 11 C 0.06 0.28 7.20 72.13 0.52 0.80 16 12 O -0.36 -6.47 10.49 -51.14 -0.54 -7.01 16 13 C 0.67 15.35 8.55 129.96 1.11 16.46 16 14 O -0.58 -19.17 17.95 19.90 0.36 -18.81 16 15 N -0.71 -12.22 4.85 -577.05 -2.80 -15.02 16 16 N -0.35 -14.94 12.59 -54.45 -0.69 -15.63 16 17 N -0.34 -15.60 3.59 -338.44 -1.22 -16.81 16 18 C 0.28 13.98 5.99 85.63 0.51 14.49 16 19 C -0.55 -30.04 9.39 25.60 0.24 -29.80 16 20 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 21 C 0.02 1.27 5.46 84.66 0.46 1.74 16 22 N -0.92 -50.62 13.29 21.45 0.28 -50.34 16 23 Si 0.97 41.84 29.54 68.60 2.03 43.86 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 29 H 0.07 2.27 7.07 -2.39 -0.02 2.26 16 30 H 0.16 5.99 5.92 -2.91 -0.02 5.97 16 31 H 0.43 6.12 8.82 -92.71 -0.82 5.30 16 32 H 0.15 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.08 0.83 8.10 -2.38 -0.02 0.82 16 34 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.42 8.05 8.52 -92.70 -0.79 7.26 16 37 H 0.05 2.55 7.04 -2.39 -0.02 2.53 16 38 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -80.54 338.47 1.31 -79.23 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -0.49 Total: 14.79 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 6.08 Total: 16.96 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -6.09 Total: -113.09 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.22 Total: -41.75 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -80.54 1.31 -79.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860521769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.714 kcal (2) G-P(sol) polarization free energy of solvation -80.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds