Wall clock time and date at job start Fri Apr 10 2020 17:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35653 * 119.95147 * 2 1 4 4 O 1.34684 * 119.11562 * 359.94996 * 3 2 1 5 5 N 1.31849 * 121.77376 * 179.97438 * 3 2 1 6 6 C 1.32573 * 121.61128 * 359.97438 * 5 3 2 7 7 C 1.39426 * 119.69830 * 0.02562 * 6 5 3 8 8 C 1.46897 * 120.81746 * 180.02562 * 7 6 5 9 9 O 1.21672 * 120.00297 * 56.51293 * 8 7 6 10 10 N 1.34777 * 120.00238 * 236.51207 * 8 7 6 11 11 C 1.46965 * 120.59261 * 4.52007 * 10 8 7 12 12 C 1.53806 * 108.40122 * 124.75898 * 11 10 8 13 13 N 1.46961 * 108.57917 * 49.63531 * 12 11 10 14 14 C 1.36944 * 120.59475 * 124.67051 * 13 12 11 15 15 H 1.08000 * 119.99380 * 328.51826 * 14 13 12 16 16 C 1.38809 * 120.00264 * 148.52021 * 14 13 12 17 17 N 1.31613 * 120.00337 * 164.02057 * 16 14 13 18 18 Si 1.86811 * 119.99868 * 344.02139 * 16 14 13 19 19 H 1.48497 * 109.46968 * 90.16994 * 18 16 14 20 20 H 1.48497 * 109.46916 * 210.17013 * 18 16 14 21 21 H 1.48499 * 109.47148 * 330.17366 * 18 16 14 22 22 C 1.46969 * 118.81693 * 304.65054 * 13 12 11 23 23 C 1.46969 * 120.59733 * 184.80293 * 10 8 7 24 24 C 1.35017 * 119.95194 * 179.97438 * 2 1 3 25 25 O 1.21826 * 120.77269 * 359.97438 * 24 2 1 26 26 H 1.08997 * 109.46928 * 270.02519 * 1 2 3 27 27 H 1.09000 * 109.47051 * 30.02348 * 1 2 3 28 28 H 1.09000 * 109.46983 * 150.02024 * 1 2 3 29 29 H 0.96702 * 116.99836 * 179.97438 * 4 3 2 30 30 H 1.08004 * 120.14912 * 180.27479 * 6 5 3 31 31 H 1.09002 * 109.60850 * 244.54494 * 11 10 8 32 32 H 1.08997 * 109.60988 * 5.05395 * 11 10 8 33 33 H 1.09003 * 109.74365 * 289.85265 * 12 11 10 34 34 H 1.08997 * 109.53917 * 169.30561 * 12 11 10 35 35 H 0.97000 * 120.00661 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.60857 * 295.48419 * 22 13 12 37 37 H 1.08992 * 109.61460 * 174.96989 * 22 13 12 38 38 H 1.09000 * 109.60353 * 354.94370 * 23 10 8 39 39 H 1.08995 * 109.60945 * 115.45881 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1423 1.1754 0.0000 4 8 1.4500 2.3306 -0.0010 5 7 3.4601 1.2173 0.0005 6 6 4.1906 0.1109 0.0015 7 6 3.5604 -1.1328 0.0016 8 6 4.3457 -2.3743 0.0033 9 8 5.1612 -2.5771 0.8831 10 7 4.1628 -3.2887 -0.9698 11 6 3.2544 -3.0151 -2.0922 12 6 4.0362 -3.1948 -3.4045 13 7 4.7370 -4.4858 -3.3590 14 6 4.5511 -5.4149 -4.3477 15 1 3.6002 -5.4802 -4.8555 16 6 5.5849 -6.2728 -4.6972 17 7 5.3324 -7.3542 -5.4036 18 14 7.3347 -5.8925 -4.1648 19 1 7.5977 -6.5195 -2.8447 20 1 8.2861 -6.4337 -5.1683 21 1 7.5110 -4.4219 -4.0581 22 6 5.6411 -4.7618 -2.2337 23 6 4.8635 -4.5798 -0.9243 24 6 2.1391 -1.1698 0.0005 25 8 1.5434 -2.2325 0.0015 26 1 -0.3633 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.9634 3.1501 -0.0006 30 1 5.2688 0.1728 0.0064 31 1 2.4172 -3.7125 -2.0635 32 1 2.8843 -1.9923 -2.0223 33 1 4.7616 -2.3886 -3.5143 34 1 3.3435 -3.1840 -4.2459 35 1 6.0548 -7.9535 -5.6482 36 1 6.4806 -4.0671 -2.2601 37 1 6.0082 -5.7858 -2.3019 38 1 5.5563 -4.5905 -0.0829 39 1 4.1382 -5.3860 -0.8145 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949607032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:08 Heat of formation + Delta-G solvation = -13.291412 kcal Electronic energy + Delta-G solvation = -26303.695640 eV Core-core repulsion = 22442.314874 eV Total energy + Delta-G solvation = -3861.380766 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.29830 -39.79753 -38.87020 -37.32621 -36.84072 -35.52202 -33.87862 -31.55783 -31.21580 -30.31123 -28.40369 -27.21816 -25.24544 -24.09757 -23.57459 -22.96465 -21.14338 -19.86818 -19.36521 -19.01556 -17.63639 -17.17363 -16.75401 -16.25754 -16.06919 -15.52911 -15.22131 -15.04171 -14.70906 -14.33372 -14.17077 -14.03619 -13.72686 -13.59736 -13.35144 -12.97946 -12.68606 -12.47125 -12.34056 -12.10696 -11.89936 -11.06712 -11.01428 -10.87990 -10.63642 -10.42283 -10.38664 -10.21961 -9.99384 -9.63674 -9.49907 -8.79399 -8.61594 -8.22362 -6.90168 -5.96216 -3.38855 0.16545 1.34890 1.49412 2.66010 2.99384 3.26261 3.32355 3.45451 3.49341 3.51966 3.73818 4.11962 4.51169 4.63051 4.79915 4.82057 4.91235 5.14222 5.16489 5.29752 5.31275 5.54541 5.60666 5.64242 5.84551 5.93368 5.99409 6.13986 6.18735 6.30097 6.45855 6.51493 6.55888 6.74274 6.96988 7.25581 7.45403 7.81516 7.95471 8.31815 8.46454 8.89609 9.68218 10.06294 11.19527 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.025226 B = 0.004000 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.721200 B = 6998.071973 C = 7296.890676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.511 5.511 3 C 0.599 3.401 4 O -0.456 6.456 5 N -0.590 5.590 6 C 0.243 3.757 7 C -0.330 4.330 8 C 0.587 3.413 9 O -0.552 6.552 10 N -0.581 5.581 11 C 0.104 3.896 12 C 0.135 3.865 13 N -0.605 5.605 14 C -0.264 4.264 15 H 0.086 0.914 16 C 0.027 3.973 17 N -0.909 5.909 18 Si 0.887 3.113 19 H -0.285 1.285 20 H -0.302 1.302 21 H -0.271 1.271 22 C 0.112 3.888 23 C 0.097 3.903 24 C 0.551 3.449 25 O -0.501 6.501 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.443 0.557 30 H 0.181 0.819 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.264 0.736 36 H 0.032 0.968 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 21.790 10.916 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.240 5.240 3 C 0.300 3.700 4 O -0.254 6.254 5 N -0.331 5.331 6 C 0.099 3.901 7 C -0.341 4.341 8 C 0.373 3.627 9 O -0.432 6.432 10 N -0.312 5.312 11 C -0.020 4.020 12 C 0.008 3.992 13 N -0.329 5.329 14 C -0.392 4.392 15 H 0.103 0.897 16 C -0.172 4.172 17 N -0.552 5.552 18 Si 0.718 3.282 19 H -0.213 1.213 20 H -0.231 1.231 21 H -0.196 1.196 22 C -0.014 4.014 23 C -0.027 4.027 24 C 0.350 3.650 25 O -0.376 6.376 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.305 0.695 30 H 0.198 0.802 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.889 21.185 11.237 25.575 hybrid contribution 0.855 0.023 0.195 0.877 sum -8.034 21.208 11.432 25.397 Atomic orbital electron populations 1.22231 0.75787 1.05824 1.04641 1.46460 1.11067 1.05072 1.61372 1.20282 0.85119 0.81456 0.83129 1.84147 1.39238 1.14801 1.87177 1.68424 1.00582 1.31759 1.32384 1.22819 1.00316 0.84741 0.82248 1.21550 0.92590 0.96919 1.23039 1.17144 0.81829 0.82122 0.81557 1.90768 1.36865 1.78080 1.37441 1.47819 1.44045 1.16481 1.22809 1.22363 0.92767 0.99902 0.86995 1.21427 0.94993 0.88234 0.94575 1.44262 1.51858 1.13985 1.22816 1.18911 0.97840 1.10025 1.12429 0.89681 1.25363 0.97809 0.96884 0.97181 1.69784 1.32296 1.12011 1.41110 0.86902 0.85883 0.78766 0.76677 1.21276 1.23056 1.19565 1.21792 0.92510 1.00528 0.86563 1.22270 0.96825 0.83575 1.00011 1.16910 0.87603 0.82116 0.78395 1.91003 1.69902 1.26379 1.50293 0.90035 0.88649 0.88064 0.69462 0.80210 0.90848 0.92048 0.95522 0.90678 0.92647 0.94991 0.89819 0.89566 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.16 59.85 0.61 0.99 16 2 N -0.51 -5.02 2.99 -128.29 -0.38 -5.40 16 3 C 0.60 4.70 8.60 -88.68 -0.76 3.93 16 4 O -0.46 -1.63 12.18 -15.81 -0.19 -1.82 16 5 N -0.59 -5.39 10.31 -13.97 -0.14 -5.54 16 6 C 0.24 2.78 11.02 -16.79 -0.19 2.60 16 7 C -0.33 -4.87 4.56 -104.44 -0.48 -5.35 16 8 C 0.59 10.90 6.84 -12.76 -0.09 10.81 16 9 O -0.55 -11.52 16.51 5.21 0.09 -11.44 16 10 N -0.58 -11.22 2.91 -173.67 -0.50 -11.73 16 11 C 0.10 1.88 5.09 -3.37 -0.02 1.87 16 12 C 0.13 2.68 6.69 -3.37 -0.02 2.66 16 13 N -0.61 -14.59 2.70 -171.77 -0.46 -15.06 16 14 C -0.26 -7.37 10.03 -15.06 -0.15 -7.52 16 15 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 16 C 0.03 0.78 5.29 -17.43 -0.09 0.69 16 17 N -0.91 -27.87 13.97 55.49 0.78 -27.10 16 18 Si 0.89 22.59 24.32 -169.99 -4.13 18.46 16 19 H -0.29 -7.00 6.57 56.52 0.37 -6.63 16 20 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 21 H -0.27 -6.82 6.62 56.52 0.37 -6.45 16 22 C 0.11 2.55 4.34 -3.59 -0.02 2.53 16 23 C 0.10 1.97 6.60 -3.59 -0.02 1.95 16 24 C 0.55 7.74 6.05 -14.64 -0.09 7.65 16 25 O -0.50 -8.53 14.82 5.08 0.08 -8.46 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.40 7.34 -51.93 -0.38 0.02 16 28 H 0.10 0.78 7.45 -51.93 -0.39 0.39 16 29 H 0.44 -0.46 9.08 45.56 0.41 -0.04 16 30 H 0.18 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.06 0.98 5.30 -51.93 -0.28 0.70 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 1.44 7.93 -51.93 -0.41 1.02 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.03 0.73 7.07 -51.93 -0.37 0.36 16 37 H 0.08 2.02 4.51 -51.93 -0.23 1.79 16 38 H 0.09 1.70 6.99 -51.93 -0.36 1.33 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 318.95 15.07 4.81 4.81 Total: -1.00 -37.25 318.95 -5.13 -42.38 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -3.74 Total: -1.92 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: -1.31 Total: 22.80 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -0.72 Total: -64.82 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.03 Total: -21.71 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.13 Total: 18.46 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -37.25 -5.13 -42.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949607032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.093 kcal (2) G-P(sol) polarization free energy of solvation -37.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds