Wall clock time and date at job start Fri Apr 10 2020 17:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99622 * 2 1 4 4 H 1.48507 * 109.46807 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47389 * 300.00028 * 3 2 1 6 6 H 1.48506 * 109.47318 * 60.00451 * 3 2 1 7 7 C 1.38809 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.65186 * 0.02640 * 9 7 2 11 11 C 1.54322 * 107.27269 * 178.90274 * 10 9 7 12 12 H 1.09002 * 110.71963 * 219.44477 * 11 10 9 13 13 O 1.42896 * 110.71801 * 96.34675 * 11 10 9 14 14 C 1.55164 * 102.94370 * 337.80987 * 11 10 9 15 15 H 1.09001 * 111.00047 * 277.42887 * 14 11 10 16 16 C 1.52995 * 111.00483 * 153.57714 * 14 11 10 17 17 N 1.46496 * 109.47280 * 175.00152 * 16 14 11 18 18 C 1.34777 * 120.00371 * 179.97438 * 17 16 14 19 19 O 1.21513 * 119.99777 * 359.97438 * 18 17 16 20 20 C 1.48146 * 120.00299 * 179.97438 * 18 17 16 21 21 C 1.39901 * 121.11932 * 359.97438 * 20 18 17 22 22 N 1.31767 * 119.78422 * 180.02562 * 21 20 18 23 23 N 1.28273 * 122.41660 * 0.02562 * 22 21 20 24 24 C 1.32273 * 122.44300 * 359.97438 * 23 22 21 25 25 O 1.35699 * 120.08505 * 180.02562 * 24 23 22 26 26 C 1.39239 * 119.83523 * 359.72380 * 24 23 22 27 27 C 1.47435 * 125.64724 * 179.97438 * 9 7 2 28 28 H 0.96995 * 120.00311 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.87665 * 59.48574 * 10 9 7 30 30 H 1.08995 * 109.88258 * 298.32519 * 10 9 7 31 31 H 0.96702 * 113.99631 * 63.84596 * 13 11 10 32 32 H 1.09004 * 109.46918 * 295.00017 * 16 14 11 33 33 H 1.08997 * 109.47200 * 54.99711 * 16 14 11 34 34 H 0.97005 * 119.99755 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.10889 * 359.97438 * 21 20 18 36 36 H 0.96698 * 113.99965 * 90.00080 * 25 24 23 37 37 H 1.08001 * 121.12101 * 180.30712 * 26 24 23 38 38 H 1.08997 * 110.36223 * 323.00847 * 27 9 7 39 39 H 1.09005 * 110.35921 * 85.32528 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5328 -0.0006 11 6 -0.4483 -4.0441 -0.0288 12 1 -1.2984 -4.2509 -0.6790 13 8 -0.6924 -4.5347 1.2909 14 6 0.8521 -4.6556 -0.6141 15 1 0.8570 -4.5947 -1.7024 16 6 1.0372 -6.1007 -0.1470 17 7 2.2061 -6.6826 -0.8111 18 6 2.5647 -7.9556 -0.5512 19 8 1.9185 -8.6204 0.2343 20 6 3.7464 -8.5443 -1.2232 21 6 4.5067 -7.8003 -2.1320 22 7 5.5525 -8.3503 -2.7150 23 7 5.9119 -9.5597 -2.4834 24 6 5.2601 -10.3449 -1.6418 25 8 5.6829 -11.6172 -1.4323 26 6 4.1428 -9.8607 -0.9667 27 6 1.9336 -3.7312 -0.0016 28 1 -0.4850 0.8400 0.0004 29 1 -0.5575 -2.0513 -0.8837 30 1 -0.5542 -2.0853 0.9017 31 1 -1.4730 -4.1522 1.7146 32 1 1.1869 -6.1172 0.9325 33 1 0.1495 -6.6807 -0.3996 34 1 2.7221 -6.1518 -1.4379 35 1 4.2368 -6.7787 -2.3555 36 1 6.3208 -11.7060 -0.7111 37 1 3.5981 -10.4821 -0.2713 38 1 2.8330 -3.7398 -0.6172 39 1 2.1666 -4.0428 1.0166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958165107.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:12 Heat of formation + Delta-G solvation = -62.436373 kcal Electronic energy + Delta-G solvation = -24760.269872 eV Core-core repulsion = 20896.758021 eV Total energy + Delta-G solvation = -3863.511851 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.49727 -40.83354 -39.78318 -38.66368 -36.40261 -36.23176 -34.61985 -33.88345 -32.59632 -31.36881 -29.48924 -27.61453 -26.52077 -25.64880 -24.80657 -22.48062 -21.92249 -21.31866 -20.11944 -19.38032 -19.03435 -18.54784 -17.97910 -17.40537 -16.94144 -16.80308 -16.77953 -16.37914 -15.78588 -15.41345 -15.29074 -15.12817 -14.69306 -14.58021 -14.37269 -14.26169 -13.56516 -13.30311 -13.12347 -13.08229 -12.70714 -12.55934 -12.31392 -12.08090 -11.90012 -11.77765 -11.74855 -11.50542 -11.41100 -10.96234 -10.77768 -10.72113 -10.63286 -10.21952 -8.89328 -7.85547 -5.20017 -0.92971 -0.40651 1.47212 1.47943 1.50675 1.57710 1.76021 2.20919 2.40799 2.49418 3.03309 3.14238 3.28886 3.36254 3.40067 3.57744 3.64951 3.90215 3.92302 3.98002 4.03034 4.34574 4.44990 4.60946 4.62444 4.65740 4.80589 4.86684 4.92631 5.00791 5.20459 5.39384 5.44579 5.54398 5.72276 6.19015 6.28958 6.42889 6.91002 6.95640 7.10607 7.39328 7.77612 8.41036 9.24784 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.002923 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.164048 B = 9575.741802 C =10708.516055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.237 4.237 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.158 3.842 11 C 0.096 3.904 12 H 0.087 0.913 13 O -0.571 6.571 14 C -0.093 4.093 15 H 0.113 0.887 16 C 0.155 3.845 17 N -0.702 5.702 18 C 0.565 3.435 19 O -0.559 6.559 20 C -0.113 4.113 21 C 0.070 3.930 22 N -0.235 5.235 23 N -0.271 5.271 24 C 0.264 3.736 25 O -0.475 6.475 26 C -0.071 4.071 27 C 0.139 3.861 28 H 0.246 0.754 29 H 0.023 0.977 30 H 0.012 0.988 31 H 0.391 0.609 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.415 0.585 35 H 0.210 0.790 36 H 0.431 0.569 37 H 0.179 0.821 38 H 0.056 0.944 39 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.631 -18.739 -2.714 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.366 4.366 8 H 0.102 0.898 9 N -0.351 5.351 10 C 0.032 3.968 11 C 0.035 3.965 12 H 0.105 0.895 13 O -0.379 6.379 14 C -0.113 4.113 15 H 0.131 0.869 16 C 0.031 3.969 17 N -0.354 5.354 18 C 0.350 3.650 19 O -0.437 6.437 20 C -0.127 4.127 21 C -0.096 4.096 22 N -0.078 5.078 23 N -0.124 5.124 24 C 0.077 3.923 25 O -0.284 6.284 26 C -0.102 4.102 27 C 0.014 3.986 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.031 0.969 31 H 0.240 0.760 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.253 0.747 35 H 0.227 0.773 36 H 0.294 0.706 37 H 0.197 0.803 38 H 0.074 0.926 39 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 6.580 -19.385 -3.737 20.810 hybrid contribution -0.982 1.800 1.430 2.500 sum 5.598 -17.585 -2.306 18.598 Atomic orbital electron populations 1.70141 1.06170 1.25139 1.58641 1.25591 0.96619 1.00875 1.02845 0.85054 0.78307 0.79694 0.76556 1.18966 1.21896 1.22370 1.19494 0.91069 0.83650 1.42405 0.89837 1.44699 1.02319 1.01145 1.86951 1.21703 0.84551 0.91998 0.98499 1.22962 0.96852 0.92332 0.84324 0.89534 1.86361 1.52702 1.68900 1.29901 1.22605 0.94811 0.92806 1.01071 0.86871 1.20985 0.87403 0.91412 0.97059 1.45866 1.31092 1.12398 1.46017 1.17970 0.83547 0.82054 0.81451 1.90809 1.54857 1.61566 1.36517 1.21162 0.97200 0.95518 0.98844 1.25016 0.90637 1.02849 0.91090 1.73051 1.13057 1.02604 1.19044 1.72726 1.26186 0.99637 1.13802 1.20770 0.91907 0.86689 0.92889 1.84775 1.65571 1.18202 1.59891 1.22947 0.95572 0.94602 0.97065 1.21758 0.95377 0.84228 0.97192 0.94465 0.95894 0.96943 0.75973 0.91872 0.90420 0.74667 0.77346 0.70594 0.80342 0.92577 0.96828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.07 10.31 21.65 0.22 -54.84 16 2 C -0.07 -3.65 5.49 84.86 0.47 -3.19 16 3 Si 0.97 44.44 29.55 68.60 2.03 46.46 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.24 -12.68 10.28 84.03 0.86 -11.81 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.62 -29.94 3.39 -692.00 -2.35 -32.29 16 10 C 0.16 7.14 5.14 86.73 0.45 7.59 16 11 C 0.10 3.07 4.08 31.78 0.13 3.20 16 12 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 13 O -0.57 -17.73 12.26 -148.98 -1.83 -19.56 16 14 C -0.09 -2.61 2.98 -9.41 -0.03 -2.64 16 15 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 16 C 0.15 3.80 4.61 86.38 0.40 4.20 16 17 N -0.70 -13.58 5.46 -465.70 -2.54 -16.13 16 18 C 0.56 12.22 7.80 86.88 0.68 12.90 16 19 O -0.56 -16.13 16.49 -3.76 -0.06 -16.19 16 20 C -0.11 -1.99 5.92 -19.85 -0.12 -2.11 16 21 C 0.07 1.12 10.84 85.11 0.92 2.04 16 22 N -0.24 -4.96 11.48 -56.50 -0.65 -5.61 16 23 N -0.27 -5.92 11.50 -170.30 -1.96 -7.88 16 24 C 0.26 4.55 7.85 84.87 0.67 5.22 16 25 O -0.47 -6.04 13.57 -90.19 -1.22 -7.27 16 26 C -0.07 -1.16 9.72 22.90 0.22 -0.94 16 27 C 0.14 5.04 6.64 86.85 0.58 5.62 16 28 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.02 1.16 7.38 -2.39 -0.02 1.14 16 30 H 0.01 0.65 7.43 -2.39 -0.02 0.63 16 31 H 0.39 9.65 9.12 -74.06 -0.68 8.97 16 32 H 0.06 1.87 7.56 -2.39 -0.02 1.86 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 34 H 0.42 5.78 6.62 -92.70 -0.61 5.17 16 35 H 0.21 1.91 6.53 -2.91 -0.02 1.89 16 36 H 0.43 0.80 9.06 -74.06 -0.67 0.13 16 37 H 0.18 2.55 7.79 -2.91 -0.02 2.52 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.01 0.54 7.91 -2.38 -0.02 0.52 16 Total: -1.00 -76.53 334.78 -3.96 -80.49 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -0.82 Total: 12.72 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 5.22 Total: 20.08 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -7.28 Total: -116.75 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -3.11 Total: -43.01 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -76.53 -3.96 -80.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958165107.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.055 kcal (2) G-P(sol) polarization free energy of solvation -76.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds