Wall clock time and date at job start Fri Apr 10 2020 17:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48491 * 109.47528 * 270.00248 * 3 2 1 5 5 H 1.48506 * 109.46929 * 30.00509 * 3 2 1 6 6 H 1.48502 * 109.46991 * 149.99863 * 3 2 1 7 7 C 1.38816 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99813 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.64789 * 179.97438 * 9 7 2 11 11 C 1.54329 * 107.27126 * 178.90192 * 10 9 7 12 12 H 1.09006 * 110.71291 * 96.34621 * 11 10 9 13 13 C 1.52991 * 110.72135 * 219.43990 * 11 10 9 14 14 N 1.46502 * 109.47593 * 293.54923 * 13 11 10 15 15 C 1.34772 * 120.00095 * 179.97438 * 14 13 11 16 16 O 1.21598 * 120.00217 * 359.97438 * 15 14 13 17 17 C 1.47571 * 120.00017 * 180.02562 * 15 14 13 18 18 C 1.38045 * 119.72933 * 179.97438 * 17 15 14 19 19 N 1.34879 * 119.95043 * 180.02562 * 18 17 15 20 20 H 0.97001 * 120.31005 * 179.97438 * 19 18 17 21 21 C 1.34953 * 119.38470 * 0.02562 * 19 18 17 22 22 O 1.21860 * 120.27392 * 179.97438 * 21 19 18 23 23 C 1.41785 * 119.46040 * 359.97438 * 21 19 18 24 24 N 1.30612 * 120.03338 * 359.97438 * 23 21 19 25 25 C 1.55156 * 102.94346 * 337.81127 * 11 10 9 26 26 H 1.09004 * 111.00049 * 277.42684 * 25 11 10 27 27 O 1.42894 * 111.00607 * 153.57431 * 25 11 10 28 28 C 1.47426 * 125.64929 * 359.95482 * 9 7 2 29 29 H 0.97001 * 120.00310 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.88388 * 59.48673 * 10 9 7 31 31 H 1.09001 * 110.01023 * 298.39159 * 10 9 7 32 32 H 1.09002 * 109.47399 * 173.54384 * 13 11 10 33 33 H 1.08999 * 109.46761 * 53.55071 * 13 11 10 34 34 H 0.97001 * 119.99356 * 0.02562 * 14 13 11 35 35 H 1.07996 * 120.02946 * 0.02562 * 18 17 15 36 36 H 1.07994 * 119.99036 * 179.72163 * 23 21 19 37 37 H 0.96702 * 113.99696 * 179.97438 * 27 25 11 38 38 H 1.08994 * 110.36736 * 323.00249 * 28 9 7 39 39 H 1.08998 * 110.36592 * 85.21902 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 1.9317 -3.7275 -0.0028 11 6 0.7783 -4.7525 0.0245 12 1 0.5473 -5.0999 -0.9825 13 6 1.1235 -5.9318 0.9360 14 7 2.2390 -6.6855 0.3581 15 6 2.7175 -7.7738 0.9929 16 8 2.2238 -8.1299 2.0455 17 6 3.8415 -8.5327 0.4110 18 6 4.3276 -9.6463 1.0662 19 7 5.3551 -10.3429 0.5387 20 1 5.7010 -11.1259 0.9949 21 6 5.8981 -9.9397 -0.6291 22 8 6.8272 -10.5568 -1.1200 23 6 5.3788 -8.7923 -1.2803 24 7 4.3825 -8.1347 -0.7503 25 6 -0.4014 -3.9326 0.6106 26 1 -0.3511 -3.8989 1.6989 27 8 -1.6567 -4.4573 0.1738 28 6 -0.1416 -2.5331 -0.0013 29 1 -0.4850 0.8400 0.0004 30 1 2.5587 -3.8514 0.8801 31 1 2.5292 -3.8657 -0.9039 32 1 0.2552 -6.5837 1.0313 33 1 1.4079 -5.5592 1.9200 34 1 2.6336 -6.4007 -0.4811 35 1 3.8856 -9.9595 2.0005 36 1 5.8097 -8.4595 -2.2129 37 1 -2.4238 -3.9773 0.5151 38 1 -0.5992 -1.7590 0.6145 39 1 -0.5278 -2.4846 -1.0194 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958349981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:15 Heat of formation + Delta-G solvation = -45.505050 kcal Electronic energy + Delta-G solvation = -24741.344184 eV Core-core repulsion = 20878.566530 eV Total energy + Delta-G solvation = -3862.777654 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.17616 -39.75116 -38.30497 -37.72124 -35.75330 -35.16723 -34.63037 -32.27057 -31.01309 -29.60734 -27.57508 -25.98557 -25.71574 -24.75205 -23.38558 -21.57617 -20.45737 -19.91712 -19.20069 -18.83556 -17.52494 -17.02890 -16.79233 -16.48833 -16.25479 -15.76135 -15.36647 -15.10950 -14.96997 -14.44458 -14.15637 -13.85126 -13.52285 -13.18932 -12.97750 -12.64842 -12.40785 -12.26176 -11.99060 -11.94235 -11.55155 -11.25137 -10.97923 -10.81698 -10.63758 -10.43023 -10.06411 -9.94272 -9.84298 -9.67094 -9.17678 -9.07129 -8.71226 -8.69512 -6.91356 -5.71906 -3.14233 0.01156 0.80513 2.01079 2.55961 3.05385 3.36832 3.37356 3.42447 3.44197 3.69480 3.76564 4.27179 4.41859 4.53390 4.71118 4.81684 5.03978 5.23895 5.42602 5.45466 5.49354 5.65983 5.67266 5.85637 5.91893 6.02234 6.04656 6.20084 6.36350 6.45702 6.60280 6.81723 6.99086 7.17964 7.35347 7.53938 7.54374 7.73863 8.11772 8.15374 8.28412 9.14490 9.75364 10.38511 11.32162 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.002983 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.307499 B = 9385.505785 C =10494.512788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.141 3.859 11 C -0.105 4.105 12 H 0.087 0.913 13 C 0.133 3.867 14 N -0.702 5.702 15 C 0.586 3.414 16 O -0.549 6.549 17 C -0.074 4.074 18 C 0.174 3.826 19 N -0.587 5.587 20 H 0.425 0.575 21 C 0.478 3.522 22 O -0.522 6.522 23 C 0.045 3.955 24 N -0.370 5.370 25 C 0.081 3.919 26 H 0.061 0.939 27 O -0.569 6.569 28 C 0.128 3.872 29 H 0.253 0.747 30 H 0.029 0.971 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.191 0.809 36 H 0.196 0.804 37 H 0.377 0.623 38 H 0.109 0.891 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -19.044 2.088 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.015 3.985 11 C -0.124 4.124 12 H 0.106 0.894 13 C 0.009 3.991 14 N -0.352 5.352 15 C 0.371 3.629 16 O -0.428 6.428 17 C -0.197 4.197 18 C 0.038 3.962 19 N -0.220 5.220 20 H 0.265 0.735 21 C 0.273 3.727 22 O -0.397 6.397 23 C -0.146 4.146 24 N -0.086 5.086 25 C 0.021 3.979 26 H 0.079 0.921 27 O -0.374 6.374 28 C 0.003 3.997 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.248 0.752 35 H 0.208 0.792 36 H 0.212 0.788 37 H 0.224 0.776 38 H 0.127 0.873 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 5.500 -19.037 1.894 19.906 hybrid contribution 0.790 0.352 0.399 0.952 sum 6.290 -18.686 2.292 19.849 Atomic orbital electron populations 1.69758 1.04945 1.24914 1.57573 1.24799 0.95759 0.97830 1.02243 0.86040 0.78531 0.83117 0.77619 1.21556 1.21632 1.20632 1.19097 0.90570 0.82265 1.43236 0.90261 1.44315 1.01602 0.99849 1.87059 1.21370 0.93293 0.85411 0.98448 1.22408 0.96240 0.94104 0.99698 0.89447 1.21501 0.88253 0.92344 0.96955 1.45811 1.35288 1.27405 1.26661 1.17163 0.81380 0.80526 0.83836 1.90811 1.60258 1.69150 1.22538 1.20479 1.04127 0.99236 0.95889 1.23222 0.85189 0.89828 0.97950 1.43692 1.28551 1.27653 1.22066 0.73452 1.18817 0.84848 0.88067 0.80988 1.91013 1.27950 1.56946 1.63793 1.24788 0.95202 0.92415 1.02212 1.67722 1.06021 1.27406 1.07407 1.23315 0.82122 0.95520 0.96934 0.92102 1.86369 1.15731 1.58988 1.76300 1.22546 0.85356 0.92516 0.99310 0.93640 0.95338 0.95549 0.90903 0.91007 0.75154 0.79170 0.78760 0.77632 0.87342 0.95971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.22 -6.09 10.27 -15.06 -0.15 -6.24 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.60 -14.94 3.39 -170.05 -0.58 -15.52 16 10 C 0.14 2.80 6.52 -3.06 -0.02 2.78 16 11 C -0.11 -1.78 2.75 -88.79 -0.24 -2.03 16 12 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 13 C 0.13 1.95 4.99 -4.05 -0.02 1.93 16 14 N -0.70 -9.23 5.39 -61.34 -0.33 -9.56 16 15 C 0.59 7.50 7.79 -12.46 -0.10 7.40 16 16 O -0.55 -8.19 16.28 5.28 0.09 -8.11 16 17 C -0.07 -0.73 6.71 -83.11 -0.56 -1.29 16 18 C 0.17 1.15 10.77 -16.28 -0.18 0.97 16 19 N -0.59 -3.41 5.28 -14.20 -0.08 -3.48 16 20 H 0.43 1.22 8.92 -40.82 -0.36 0.86 16 21 C 0.48 4.22 7.74 -14.82 -0.11 4.11 16 22 O -0.52 -6.25 17.95 5.05 0.09 -6.16 16 23 C 0.04 0.38 11.23 -16.72 -0.19 0.19 16 24 N -0.37 -3.69 9.62 -9.34 -0.09 -3.78 16 25 C 0.08 1.50 3.88 -24.57 -0.10 1.41 16 26 H 0.06 1.09 8.05 -51.93 -0.42 0.68 16 27 O -0.57 -9.54 13.47 -35.23 -0.47 -10.02 16 28 C 0.13 3.01 5.62 -2.52 -0.01 2.99 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.03 0.57 7.76 -51.93 -0.40 0.16 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 34 H 0.41 5.12 7.64 -40.82 -0.31 4.81 16 35 H 0.19 0.82 7.58 -52.49 -0.40 0.42 16 36 H 0.20 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.38 4.88 9.12 45.56 0.42 5.30 16 38 H 0.11 2.83 5.87 -51.93 -0.30 2.52 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -34.83 335.89 -6.41 -41.24 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -3.86 Total: 7.52 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: -1.78 Total: 11.82 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.51 Total: -58.01 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.30 Total: -24.28 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.83 -6.41 -41.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958349981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.264 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds