Wall clock time and date at job start Fri Apr 10 2020 17:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48491 * 109.47528 * 270.00248 * 3 2 1 5 5 H 1.48506 * 109.46929 * 30.00509 * 3 2 1 6 6 H 1.48502 * 109.46991 * 149.99863 * 3 2 1 7 7 C 1.38816 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99813 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.64789 * 179.97438 * 9 7 2 11 11 C 1.54329 * 107.27126 * 178.90192 * 10 9 7 12 12 H 1.09006 * 110.71291 * 96.34621 * 11 10 9 13 13 C 1.52991 * 110.72135 * 219.43990 * 11 10 9 14 14 N 1.46502 * 109.47593 * 293.54923 * 13 11 10 15 15 C 1.34772 * 120.00095 * 179.97438 * 14 13 11 16 16 O 1.21598 * 120.00217 * 359.97438 * 15 14 13 17 17 C 1.47571 * 120.00017 * 180.02562 * 15 14 13 18 18 C 1.38045 * 119.72933 * 179.97438 * 17 15 14 19 19 N 1.34879 * 119.95043 * 180.02562 * 18 17 15 20 20 H 0.97001 * 120.31005 * 179.97438 * 19 18 17 21 21 C 1.34953 * 119.38470 * 0.02562 * 19 18 17 22 22 O 1.21860 * 120.27392 * 179.97438 * 21 19 18 23 23 C 1.41785 * 119.46040 * 359.97438 * 21 19 18 24 24 N 1.30612 * 120.03338 * 359.97438 * 23 21 19 25 25 C 1.55156 * 102.94346 * 337.81127 * 11 10 9 26 26 H 1.09004 * 111.00049 * 277.42684 * 25 11 10 27 27 O 1.42894 * 111.00607 * 153.57431 * 25 11 10 28 28 C 1.47426 * 125.64929 * 359.95482 * 9 7 2 29 29 H 0.97001 * 120.00310 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.88388 * 59.48673 * 10 9 7 31 31 H 1.09001 * 110.01023 * 298.39159 * 10 9 7 32 32 H 1.09002 * 109.47399 * 173.54384 * 13 11 10 33 33 H 1.08999 * 109.46761 * 53.55071 * 13 11 10 34 34 H 0.97001 * 119.99356 * 0.02562 * 14 13 11 35 35 H 1.07996 * 120.02946 * 0.02562 * 18 17 15 36 36 H 1.07994 * 119.99036 * 179.72163 * 23 21 19 37 37 H 0.96702 * 113.99696 * 179.97438 * 27 25 11 38 38 H 1.08994 * 110.36736 * 323.00249 * 28 9 7 39 39 H 1.08998 * 110.36592 * 85.21902 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 1.9317 -3.7275 -0.0028 11 6 0.7783 -4.7525 0.0245 12 1 0.5473 -5.0999 -0.9825 13 6 1.1235 -5.9318 0.9360 14 7 2.2390 -6.6855 0.3581 15 6 2.7175 -7.7738 0.9929 16 8 2.2238 -8.1299 2.0455 17 6 3.8415 -8.5327 0.4110 18 6 4.3276 -9.6463 1.0662 19 7 5.3551 -10.3429 0.5387 20 1 5.7010 -11.1259 0.9949 21 6 5.8981 -9.9397 -0.6291 22 8 6.8272 -10.5568 -1.1200 23 6 5.3788 -8.7923 -1.2803 24 7 4.3825 -8.1347 -0.7503 25 6 -0.4014 -3.9326 0.6106 26 1 -0.3511 -3.8989 1.6989 27 8 -1.6567 -4.4573 0.1738 28 6 -0.1416 -2.5331 -0.0013 29 1 -0.4850 0.8400 0.0004 30 1 2.5587 -3.8514 0.8801 31 1 2.5292 -3.8657 -0.9039 32 1 0.2552 -6.5837 1.0313 33 1 1.4079 -5.5592 1.9200 34 1 2.6336 -6.4007 -0.4811 35 1 3.8856 -9.9595 2.0005 36 1 5.8097 -8.4595 -2.2129 37 1 -2.4238 -3.9773 0.5151 38 1 -0.5992 -1.7590 0.6145 39 1 -0.5278 -2.4846 -1.0194 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958349981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:14 Heat of formation + Delta-G solvation = -75.950886 kcal Electronic energy + Delta-G solvation = -24742.664414 eV Core-core repulsion = 20878.566530 eV Total energy + Delta-G solvation = -3864.097885 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.85571 -40.79750 -39.73648 -38.57749 -36.63780 -36.44768 -35.96730 -33.98869 -31.97554 -31.06321 -29.24821 -27.35963 -26.53342 -25.90386 -24.68355 -22.66003 -22.01166 -21.32679 -20.15800 -19.52650 -18.91409 -18.44762 -18.05201 -17.22715 -17.17271 -16.89299 -16.81521 -16.34007 -15.77416 -15.66335 -15.60034 -15.12492 -14.72169 -14.47923 -14.41760 -14.00283 -13.67043 -13.62731 -13.19561 -13.07959 -12.89757 -12.75712 -12.73436 -12.35427 -12.29648 -11.88552 -11.83638 -11.49942 -11.21502 -10.81472 -10.71762 -10.57717 -10.13568 -9.42414 -8.90667 -7.78321 -5.23339 -0.57693 0.04965 1.41447 1.48800 1.50065 1.58780 1.71666 2.12860 2.49125 2.60378 2.99101 3.09876 3.24226 3.32434 3.61874 3.66626 3.80852 3.87547 3.94844 4.14007 4.22510 4.46597 4.49605 4.63736 4.73137 4.83493 4.93340 5.00971 5.16175 5.25625 5.29333 5.39595 5.45228 5.50404 5.75978 6.26507 6.28943 6.48253 6.63127 6.92085 7.09438 7.13706 7.75662 8.38309 9.23497 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.002983 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.307499 B = 9385.505785 C =10494.512788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.981 3.019 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.623 5.623 10 C 0.140 3.860 11 C -0.089 4.089 12 H 0.089 0.911 13 C 0.147 3.853 14 N -0.704 5.704 15 C 0.588 3.412 16 O -0.573 6.573 17 C -0.102 4.102 18 C 0.210 3.790 19 N -0.568 5.568 20 H 0.443 0.557 21 C 0.479 3.521 22 O -0.555 6.555 23 C 0.039 3.961 24 N -0.383 5.383 25 C 0.098 3.902 26 H 0.071 0.929 27 O -0.569 6.569 28 C 0.133 3.867 29 H 0.248 0.752 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.416 0.584 35 H 0.221 0.779 36 H 0.210 0.790 37 H 0.394 0.606 38 H 0.079 0.921 39 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.340 -20.679 2.784 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.809 3.191 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.368 4.368 8 H 0.101 0.899 9 N -0.351 5.351 10 C 0.015 3.985 11 C -0.108 4.108 12 H 0.108 0.892 13 C 0.023 3.977 14 N -0.354 5.354 15 C 0.375 3.625 16 O -0.453 6.453 17 C -0.226 4.226 18 C 0.073 3.927 19 N -0.201 5.201 20 H 0.286 0.714 21 C 0.275 3.725 22 O -0.433 6.433 23 C -0.151 4.151 24 N -0.099 5.099 25 C 0.038 3.962 26 H 0.089 0.911 27 O -0.376 6.376 28 C 0.007 3.993 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.252 0.748 35 H 0.238 0.762 36 H 0.227 0.773 37 H 0.244 0.756 38 H 0.097 0.903 39 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 6.448 -20.715 2.596 21.850 hybrid contribution 0.490 0.800 0.191 0.958 sum 6.938 -19.915 2.787 21.272 Atomic orbital electron populations 1.70001 1.06180 1.25122 1.58538 1.25623 0.96658 1.00976 1.02579 0.85043 0.77675 0.79014 0.77384 1.21501 1.21961 1.19361 1.19471 0.91113 0.83555 1.42655 0.89866 1.44603 1.02394 1.01066 1.86998 1.21501 0.94324 0.83962 0.98715 1.22237 0.94329 0.93953 1.00320 0.89236 1.21212 0.89052 0.91488 0.95934 1.45745 1.35051 1.27688 1.26895 1.17444 0.81592 0.80117 0.83378 1.90794 1.61259 1.69743 1.23534 1.20177 1.04665 1.00784 0.96944 1.23475 0.83692 0.87888 0.97685 1.43574 1.27651 1.27716 1.21147 0.71368 1.18852 0.84321 0.87833 0.81449 1.91005 1.29431 1.57966 1.64861 1.24989 0.94965 0.92356 1.02799 1.67650 1.06506 1.27989 1.07716 1.22984 0.83469 0.92749 0.97047 0.91110 1.86344 1.15788 1.58888 1.76531 1.22334 0.84779 0.94970 0.97230 0.94243 0.94857 0.94950 0.90504 0.91536 0.74759 0.76247 0.77324 0.75637 0.90280 0.99140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.30 10.09 21.65 0.22 -55.08 16 2 C -0.07 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.98 44.88 29.55 68.60 2.03 46.91 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.24 -13.14 10.27 84.04 0.86 -12.28 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -31.32 3.39 -691.92 -2.35 -33.67 16 10 C 0.14 5.48 6.52 86.73 0.57 6.05 16 11 C -0.09 -2.93 2.75 -9.61 -0.03 -2.95 16 12 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 13 C 0.15 4.09 4.99 86.38 0.43 4.52 16 14 N -0.70 -17.45 5.39 -466.24 -2.51 -19.96 16 15 C 0.59 13.96 7.79 86.71 0.68 14.64 16 16 O -0.57 -15.94 16.28 -4.02 -0.07 -16.01 16 17 C -0.10 -1.82 6.71 41.21 0.28 -1.54 16 18 C 0.21 2.12 10.77 84.18 0.91 3.02 16 19 N -0.57 -4.96 5.28 -316.88 -1.67 -6.64 16 20 H 0.44 1.11 8.92 -92.71 -0.83 0.28 16 21 C 0.48 7.58 7.74 85.09 0.66 8.24 16 22 O -0.55 -12.56 17.95 -4.86 -0.09 -12.64 16 23 C 0.04 0.60 11.23 85.75 0.96 1.57 16 24 N -0.38 -7.04 9.62 -183.47 -1.77 -8.80 16 25 C 0.10 3.56 3.88 31.99 0.12 3.69 16 26 H 0.07 2.46 8.05 -2.38 -0.02 2.45 16 27 O -0.57 -18.33 13.47 -148.98 -2.01 -20.34 16 28 C 0.13 6.36 5.62 86.86 0.49 6.85 16 29 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.03 1.29 7.76 -2.39 -0.02 1.27 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16 34 H 0.42 9.78 7.64 -92.71 -0.71 9.07 16 35 H 0.22 0.98 7.58 -2.91 -0.02 0.96 16 36 H 0.21 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.39 9.73 9.12 -74.06 -0.68 9.05 16 38 H 0.08 4.27 5.87 -2.39 -0.01 4.26 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 Total: -1.00 -75.81 335.89 -2.90 -78.71 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -1.08 Total: 18.93 kcal Atomic # 6 Polarization: 22.21 SS G_CDS: 6.39 Total: 28.60 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -8.08 Total: -124.15 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -2.16 Total: -48.99 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -75.81 -2.90 -78.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958349981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.758 kcal (2) G-P(sol) polarization free energy of solvation -75.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds