Wall clock time and date at job start Fri Apr 10 2020 17:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99714 * 2 1 4 4 H 1.48497 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46924 * 300.00255 * 3 2 1 6 6 H 1.48498 * 109.47414 * 59.99800 * 3 2 1 7 7 C 1.38808 * 120.00644 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00709 * 189.10252 * 7 2 1 9 9 N 1.36943 * 119.99483 * 9.09989 * 7 2 1 10 10 C 1.48141 * 127.84046 * 15.57283 * 9 7 2 11 11 C 1.54393 * 104.61872 * 140.41467 * 10 9 7 12 12 H 1.08997 * 117.61353 * 244.78536 * 11 10 9 13 13 C 1.54288 * 104.95904 * 23.86782 * 11 10 9 14 14 H 1.08998 * 121.81382 * 223.98217 * 13 11 10 15 15 C 1.48150 * 127.83410 * 195.57401 * 9 7 2 16 16 C 1.52999 * 118.12187 * 89.20926 * 11 10 9 17 17 H 1.08996 * 117.44134 * 14.50964 * 16 11 10 18 18 N 1.46498 * 117.44411 * 159.21524 * 16 11 10 19 19 C 1.34769 * 120.00190 * 204.99807 * 18 16 11 20 20 O 1.21281 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00017 * 179.97438 * 19 18 16 22 22 C 1.53002 * 109.47164 * 180.02562 * 21 19 18 23 23 H 1.08998 * 110.53582 * 55.70286 * 22 21 19 24 24 N 1.47317 * 110.60079 * 292.87299 * 22 21 19 25 25 C 1.34529 * 106.61721 * 241.47208 * 24 22 21 26 26 O 1.21541 * 123.76436 * 179.97438 * 25 24 22 27 27 N 1.33789 * 112.46014 * 0.02562 * 25 24 22 28 28 C 1.35123 * 111.68519 * 359.90803 * 27 25 24 29 29 O 1.21228 * 127.33516 * 180.09940 * 28 27 25 30 30 H 0.96997 * 120.00218 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.40568 * 21.62990 * 10 9 7 32 32 H 1.09005 * 110.50685 * 259.24604 * 10 9 7 33 33 H 1.09002 * 110.40708 * 338.36737 * 15 9 7 34 34 H 1.09001 * 110.40713 * 100.80363 * 15 9 7 35 35 H 0.97007 * 119.99712 * 24.99312 * 18 16 11 36 36 H 1.08999 * 109.47447 * 299.99847 * 21 19 18 37 37 H 1.09002 * 109.47515 * 60.00420 * 21 19 18 38 38 H 0.96996 * 126.68446 * 61.50263 * 24 22 21 39 39 H 0.96994 * 124.17555 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3966 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0802 -1.2080 0.1474 9 7 1.3386 -2.3805 -0.1886 10 6 -0.0340 -2.5705 -0.7124 11 6 0.0640 -3.8160 -1.6195 12 1 -0.1152 -3.6796 -2.6860 13 6 1.2864 -4.5967 -1.0934 14 1 2.0254 -5.0295 -1.7675 15 6 1.8198 -3.7545 0.0856 16 6 -0.1647 -5.1896 -0.9857 17 1 -0.6188 -5.2164 0.0048 18 7 -0.5318 -6.2922 -1.8777 19 6 -1.2182 -7.3477 -1.3973 20 8 -1.5325 -7.3846 -0.2265 21 6 -1.5963 -8.4816 -2.3151 22 6 -2.3643 -9.5430 -1.5248 23 1 -3.2308 -9.1010 -1.0329 24 7 -1.4839 -10.1929 -0.5385 25 6 -1.4362 -11.4969 -0.8657 26 8 -0.7924 -12.3245 -0.2510 27 7 -2.1757 -11.7807 -1.9440 28 6 -2.7883 -10.6801 -2.4330 29 8 -3.5225 -10.6138 -3.3954 30 1 -0.4850 0.8400 0.0004 31 1 -0.3431 -1.7011 -1.2927 32 1 -0.7331 -2.7494 0.1045 33 1 2.9094 -3.7784 0.1074 34 1 1.4118 -4.1191 1.0283 35 1 -0.2807 -6.2624 -2.8143 36 1 -2.2256 -8.1028 -3.1205 37 1 -0.6938 -8.9243 -2.7366 38 1 -1.0280 -9.7642 0.2025 39 1 -2.2630 -12.6677 -2.3267 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960341327.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:24 Heat of formation + Delta-G solvation = -17.048273 kcal Electronic energy + Delta-G solvation = -24536.753861 eV Core-core repulsion = 20675.210186 eV Total energy + Delta-G solvation = -3861.543676 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.76167 -39.97682 -39.03781 -38.38422 -36.58327 -34.67162 -34.36204 -32.83122 -31.34487 -30.14489 -27.20706 -26.48676 -25.40058 -23.15632 -22.39614 -21.63911 -20.73348 -20.25650 -19.30668 -18.78414 -17.69123 -17.13273 -16.98774 -16.90052 -16.38543 -16.10642 -15.88422 -15.39818 -14.79818 -14.64916 -14.33103 -14.14029 -13.63962 -13.51065 -13.24209 -12.83562 -12.48059 -12.29895 -11.60230 -11.56752 -11.48086 -11.06327 -10.89542 -10.82806 -10.76010 -10.47592 -10.29813 -10.21317 -10.09271 -9.89735 -9.80065 -9.32024 -8.79420 -8.43028 -6.93173 -5.85593 -3.20096 1.08896 2.00678 2.31085 2.58328 2.63005 2.94041 3.34231 3.40497 3.42903 3.53446 3.97569 4.10920 4.36197 4.41831 4.50801 4.88405 4.94693 4.97592 5.11198 5.28411 5.30412 5.49373 5.56706 5.74342 5.84900 5.99724 6.11336 6.41486 6.43132 6.52383 6.61818 6.64522 6.82468 6.90608 7.26167 7.33403 7.46663 7.65771 7.76266 7.98175 8.14264 9.05109 9.67800 10.43934 11.28806 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.039396 B = 0.002347 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.558242 B =11929.761519 C =12293.843860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.183 3.817 11 C -0.175 4.175 12 H 0.101 0.899 13 C -0.184 4.184 14 H 0.104 0.896 15 C 0.154 3.846 16 C 0.092 3.908 17 H 0.135 0.865 18 N -0.691 5.691 19 C 0.520 3.480 20 O -0.538 6.538 21 C -0.144 4.144 22 C 0.109 3.891 23 H 0.140 0.860 24 N -0.709 5.709 25 C 0.701 3.299 26 O -0.545 6.545 27 N -0.681 5.681 28 C 0.531 3.469 29 O -0.463 6.463 30 H 0.255 0.745 31 H 0.091 0.909 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.401 0.599 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.449 0.551 39 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 -19.960 -7.641 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.057 3.943 11 C -0.196 4.196 12 H 0.119 0.881 13 C -0.206 4.206 14 H 0.122 0.878 15 C 0.027 3.973 16 C -0.013 4.013 17 H 0.152 0.848 18 N -0.338 5.338 19 C 0.306 3.694 20 O -0.415 6.415 21 C -0.186 4.186 22 C -0.001 4.001 23 H 0.158 0.842 24 N -0.376 5.376 25 C 0.400 3.600 26 O -0.418 6.418 27 N -0.352 5.352 28 C 0.316 3.684 29 O -0.331 6.331 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.235 0.765 36 H 0.141 0.859 37 H 0.125 0.875 38 H 0.296 0.704 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -5.092 -20.002 -6.928 21.771 hybrid contribution 0.710 0.689 -0.552 1.133 sum -4.382 -19.313 -7.480 21.169 Atomic orbital electron populations 1.69899 1.05067 1.25414 1.55704 1.24910 0.95663 0.98040 1.01646 0.86035 0.78876 0.83443 0.77315 1.20348 1.21600 1.21624 1.19039 0.90865 0.82249 1.43429 0.90439 1.45189 1.13296 1.00013 1.73132 1.21081 0.87016 0.92496 0.93682 1.24671 1.01789 0.92633 1.00509 0.88050 1.25033 0.89720 1.02715 1.03133 0.87775 1.21141 0.97212 0.85795 0.93104 1.22543 0.97771 0.85520 0.95499 0.84751 1.45307 1.55872 1.19717 1.12912 1.20169 0.77888 0.82767 0.88600 1.90729 1.54274 1.79246 1.17248 1.21894 1.03032 0.94350 0.99280 1.21771 0.96127 0.92676 0.89533 0.84223 1.45679 1.51801 1.06918 1.33162 1.15917 0.79752 0.83998 0.80325 1.91074 1.45293 1.50108 1.55331 1.44398 1.46872 1.13892 1.30071 1.20808 0.78648 0.85043 0.83860 1.90871 1.32997 1.84243 1.25018 0.93529 0.89050 0.95582 0.92951 0.95496 0.76491 0.85923 0.87497 0.70429 0.72486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.19 10.86 55.49 0.60 -25.58 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.46 29.56 -169.99 -5.03 16.44 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.18 10.35 -15.06 -0.16 -6.34 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 N -0.59 -14.69 3.38 -168.85 -0.57 -15.26 16 10 C 0.18 4.21 5.69 -2.41 -0.01 4.20 16 11 C -0.17 -3.01 6.91 -89.22 -0.62 -3.63 16 12 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 13 C -0.18 -3.01 7.27 -86.98 -0.63 -3.65 16 14 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 15 C 0.15 3.11 7.06 -2.40 -0.02 3.09 16 16 C 0.09 1.36 6.16 -65.70 -0.40 0.96 16 17 H 0.13 2.28 7.40 -51.93 -0.38 1.89 16 18 N -0.69 -7.17 5.60 -51.65 -0.29 -7.46 16 19 C 0.52 5.12 7.72 -10.99 -0.08 5.03 16 20 O -0.54 -7.09 14.56 5.56 0.08 -7.01 16 21 C -0.14 -0.84 5.46 -27.88 -0.15 -0.99 16 22 C 0.11 0.71 3.16 -68.20 -0.22 0.49 16 23 H 0.14 0.87 8.01 -51.93 -0.42 0.45 16 24 N -0.71 -5.50 5.89 -59.19 -0.35 -5.85 16 25 C 0.70 6.26 9.00 -88.02 -0.79 5.47 16 26 O -0.54 -6.97 18.04 5.33 0.10 -6.87 16 27 N -0.68 -4.36 5.72 -15.71 -0.09 -4.45 16 28 C 0.53 3.66 8.17 -10.40 -0.08 3.58 16 29 O -0.46 -4.32 18.02 5.60 0.10 -4.22 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.09 2.35 6.51 -51.93 -0.34 2.01 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.40 3.05 8.83 -40.82 -0.36 2.69 16 36 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.45 3.77 8.18 -40.82 -0.33 3.44 16 39 H 0.43 1.94 8.96 -40.82 -0.37 1.57 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -34.01 336.35 -8.34 -42.35 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.70 Total: 4.88 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -3.26 Total: 7.97 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.70 Total: -58.60 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.28 Total: -18.10 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.01 -8.34 -42.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960341327.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.299 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds