Wall clock time and date at job start Fri Apr 10 2020 17:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99714 * 2 1 4 4 H 1.48497 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46924 * 300.00255 * 3 2 1 6 6 H 1.48498 * 109.47414 * 59.99800 * 3 2 1 7 7 C 1.38808 * 120.00644 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00709 * 189.10252 * 7 2 1 9 9 N 1.36943 * 119.99483 * 9.09989 * 7 2 1 10 10 C 1.48141 * 127.84046 * 15.57283 * 9 7 2 11 11 C 1.54393 * 104.61872 * 140.41467 * 10 9 7 12 12 H 1.08997 * 117.61353 * 244.78536 * 11 10 9 13 13 C 1.54288 * 104.95904 * 23.86782 * 11 10 9 14 14 H 1.08998 * 121.81382 * 223.98217 * 13 11 10 15 15 C 1.48150 * 127.83410 * 195.57401 * 9 7 2 16 16 C 1.52999 * 118.12187 * 89.20926 * 11 10 9 17 17 H 1.08996 * 117.44134 * 14.50964 * 16 11 10 18 18 N 1.46498 * 117.44411 * 159.21524 * 16 11 10 19 19 C 1.34769 * 120.00190 * 204.99807 * 18 16 11 20 20 O 1.21281 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00017 * 179.97438 * 19 18 16 22 22 C 1.53002 * 109.47164 * 180.02562 * 21 19 18 23 23 H 1.08998 * 110.53582 * 55.70286 * 22 21 19 24 24 N 1.47317 * 110.60079 * 292.87299 * 22 21 19 25 25 C 1.34529 * 106.61721 * 241.47208 * 24 22 21 26 26 O 1.21541 * 123.76436 * 179.97438 * 25 24 22 27 27 N 1.33789 * 112.46014 * 0.02562 * 25 24 22 28 28 C 1.35123 * 111.68519 * 359.90803 * 27 25 24 29 29 O 1.21228 * 127.33516 * 180.09940 * 28 27 25 30 30 H 0.96997 * 120.00218 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.40568 * 21.62990 * 10 9 7 32 32 H 1.09005 * 110.50685 * 259.24604 * 10 9 7 33 33 H 1.09002 * 110.40708 * 338.36737 * 15 9 7 34 34 H 1.09001 * 110.40713 * 100.80363 * 15 9 7 35 35 H 0.97007 * 119.99712 * 24.99312 * 18 16 11 36 36 H 1.08999 * 109.47447 * 299.99847 * 21 19 18 37 37 H 1.09002 * 109.47515 * 60.00420 * 21 19 18 38 38 H 0.96996 * 126.68446 * 61.50263 * 24 22 21 39 39 H 0.96994 * 124.17555 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3966 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0802 -1.2080 0.1474 9 7 1.3386 -2.3805 -0.1886 10 6 -0.0340 -2.5705 -0.7124 11 6 0.0640 -3.8160 -1.6195 12 1 -0.1152 -3.6796 -2.6860 13 6 1.2864 -4.5967 -1.0934 14 1 2.0254 -5.0295 -1.7675 15 6 1.8198 -3.7545 0.0856 16 6 -0.1647 -5.1896 -0.9857 17 1 -0.6188 -5.2164 0.0048 18 7 -0.5318 -6.2922 -1.8777 19 6 -1.2182 -7.3477 -1.3973 20 8 -1.5325 -7.3846 -0.2265 21 6 -1.5963 -8.4816 -2.3151 22 6 -2.3643 -9.5430 -1.5248 23 1 -3.2308 -9.1010 -1.0329 24 7 -1.4839 -10.1929 -0.5385 25 6 -1.4362 -11.4969 -0.8657 26 8 -0.7924 -12.3245 -0.2510 27 7 -2.1757 -11.7807 -1.9440 28 6 -2.7883 -10.6801 -2.4330 29 8 -3.5225 -10.6138 -3.3954 30 1 -0.4850 0.8400 0.0004 31 1 -0.3431 -1.7011 -1.2927 32 1 -0.7331 -2.7494 0.1045 33 1 2.9094 -3.7784 0.1074 34 1 1.4118 -4.1191 1.0283 35 1 -0.2807 -6.2624 -2.8143 36 1 -2.2256 -8.1028 -3.1205 37 1 -0.6938 -8.9243 -2.7366 38 1 -1.0280 -9.7642 0.2025 39 1 -2.2630 -12.6677 -2.3267 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960341327.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:23 Heat of formation + Delta-G solvation = -45.671141 kcal Electronic energy + Delta-G solvation = -24537.995042 eV Core-core repulsion = 20675.210186 eV Total energy + Delta-G solvation = -3862.784856 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.39656 -40.98200 -39.79084 -39.67301 -37.34239 -36.02698 -35.00589 -34.35926 -32.42154 -31.48371 -28.88140 -27.78522 -26.64991 -23.89956 -23.56548 -22.52609 -21.91946 -21.42405 -20.78339 -19.42744 -18.87076 -18.40781 -17.79401 -17.78446 -17.32204 -16.87832 -16.70667 -16.58083 -16.14072 -15.64788 -15.38285 -15.08505 -14.97628 -14.71921 -14.61447 -14.00001 -13.72049 -13.32393 -13.23887 -12.90582 -12.86391 -12.73780 -12.22471 -12.07513 -12.00098 -11.86442 -11.63496 -11.49716 -11.46748 -11.02975 -10.83382 -10.68264 -10.54764 -9.62906 -8.91752 -7.92353 -5.28777 0.48121 1.40190 1.47456 1.47501 1.50642 1.58834 1.85511 1.95148 2.19810 2.48378 2.81393 2.92696 3.28398 3.42643 3.57730 3.81019 3.84815 3.90020 3.95669 4.16335 4.36725 4.44240 4.51195 4.54469 4.65559 4.84875 4.93528 5.01718 5.07310 5.31874 5.43113 5.45902 5.56831 5.66168 5.76037 5.88567 6.17339 6.33997 6.51748 7.00795 7.09686 7.20706 7.67554 8.45465 9.21593 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.039396 B = 0.002347 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.558242 B =11929.761519 C =12293.843860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.618 5.618 10 C 0.186 3.814 11 C -0.176 4.176 12 H 0.125 0.875 13 C -0.171 4.171 14 H 0.136 0.864 15 C 0.146 3.854 16 C 0.123 3.877 17 H 0.111 0.889 18 N -0.680 5.680 19 C 0.521 3.479 20 O -0.572 6.572 21 C -0.131 4.131 22 C 0.109 3.891 23 H 0.146 0.854 24 N -0.706 5.706 25 C 0.705 3.295 26 O -0.586 6.586 27 N -0.668 5.668 28 C 0.546 3.454 29 O -0.482 6.482 30 H 0.250 0.750 31 H 0.057 0.943 32 H -0.004 1.004 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.420 0.580 36 H 0.151 0.849 37 H 0.131 0.869 38 H 0.447 0.553 39 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 -21.387 -9.566 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.343 5.343 10 C 0.060 3.940 11 C -0.197 4.197 12 H 0.143 0.857 13 C -0.192 4.192 14 H 0.153 0.847 15 C 0.021 3.979 16 C 0.015 3.985 17 H 0.129 0.871 18 N -0.329 5.329 19 C 0.309 3.691 20 O -0.452 6.452 21 C -0.171 4.171 22 C -0.001 4.001 23 H 0.164 0.836 24 N -0.370 5.370 25 C 0.404 3.596 26 O -0.463 6.463 27 N -0.340 5.340 28 C 0.332 3.668 29 O -0.351 6.351 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.014 0.986 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.258 0.742 36 H 0.168 0.832 37 H 0.149 0.851 38 H 0.293 0.707 39 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -4.522 -21.473 -8.904 23.682 hybrid contribution 0.488 1.077 0.127 1.189 sum -4.034 -20.396 -8.777 22.567 Atomic orbital electron populations 1.70097 1.06523 1.25705 1.57205 1.25746 0.96503 1.01309 1.02101 0.84995 0.78303 0.79153 0.76746 1.18865 1.21610 1.22038 1.19418 0.91373 0.83544 1.42495 0.90052 1.45505 1.13851 1.01150 1.73751 1.20818 0.85936 0.94007 0.93238 1.24330 1.03545 0.91323 1.00518 0.85701 1.24925 0.90528 1.02329 1.01428 0.84652 1.21282 0.97820 0.84393 0.94446 1.21990 0.96026 0.85455 0.94980 0.87133 1.45116 1.55998 1.18546 1.13267 1.20847 0.76626 0.83047 0.88618 1.90737 1.55339 1.79916 1.19169 1.21886 1.04470 0.92262 0.98530 1.21875 0.96254 0.92671 0.89264 0.83645 1.45706 1.51497 1.06623 1.33181 1.15945 0.79399 0.83889 0.80349 1.91051 1.47169 1.51290 1.56766 1.44236 1.46032 1.14483 1.29207 1.20649 0.77976 0.84937 0.83253 1.90882 1.33889 1.84428 1.25948 0.94096 0.92484 0.98613 0.92111 0.96390 0.74237 0.83172 0.85085 0.70724 0.71379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.26 10.86 21.65 0.24 -56.02 16 2 C -0.06 -3.52 5.40 84.86 0.46 -3.06 16 3 Si 0.98 44.78 29.56 68.60 2.03 46.80 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.24 -13.21 10.35 84.03 0.87 -12.34 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 9 N -0.62 -31.24 3.38 -688.13 -2.33 -33.56 16 10 C 0.19 8.83 5.69 86.54 0.49 9.33 16 11 C -0.18 -5.87 6.91 -9.88 -0.07 -5.94 16 12 H 0.13 3.59 8.14 -2.39 -0.02 3.57 16 13 C -0.17 -5.22 7.27 -8.44 -0.06 -5.28 16 14 H 0.14 3.36 8.14 -2.39 -0.02 3.34 16 15 C 0.15 5.85 7.06 86.54 0.61 6.46 16 16 C 0.12 3.41 6.16 46.44 0.29 3.69 16 17 H 0.11 3.72 7.40 -2.39 -0.02 3.70 16 18 N -0.68 -11.78 5.60 -435.72 -2.44 -14.22 16 19 C 0.52 8.65 7.72 87.66 0.68 9.33 16 20 O -0.57 -14.12 14.56 -3.03 -0.04 -14.16 16 21 C -0.13 -0.99 5.46 29.85 0.16 -0.82 16 22 C 0.11 1.10 3.16 44.37 0.14 1.24 16 23 H 0.15 1.43 8.01 -2.39 -0.02 1.41 16 24 N -0.71 -9.62 5.89 -459.59 -2.70 -12.32 16 25 C 0.70 11.51 9.00 179.44 1.61 13.13 16 26 O -0.59 -14.61 18.04 -3.85 -0.07 -14.68 16 27 N -0.67 -7.14 5.72 -440.67 -2.52 -9.66 16 28 C 0.55 6.01 8.17 87.88 0.72 6.73 16 29 O -0.48 -7.63 18.02 -2.87 -0.05 -7.69 16 30 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.06 3.07 6.51 -2.39 -0.02 3.06 16 32 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.42 4.41 8.83 -92.70 -0.82 3.59 16 36 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.45 6.91 8.18 -92.71 -0.76 6.15 16 39 H 0.44 3.12 8.96 -92.71 -0.83 2.29 16 Total: -1.00 -76.93 336.35 -3.26 -80.19 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -1.27 Total: 12.86 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 5.90 Total: 22.46 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -9.76 Total: -125.79 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.17 Total: -36.53 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -76.93 -3.26 -80.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960341327.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.521 kcal (2) G-P(sol) polarization free energy of solvation -76.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds