Wall clock time and date at job start Fri Apr 10 2020 17:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48497 * 109.47334 * 274.81080 * 3 2 1 5 5 H 1.48501 * 109.47253 * 34.81024 * 3 2 1 6 6 H 1.48499 * 109.47293 * 154.80711 * 3 2 1 7 7 C 1.38810 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00312 * 170.82007 * 7 2 1 9 9 N 1.36933 * 119.99758 * 350.81426 * 7 2 1 10 10 C 1.48147 * 127.83448 * 164.39036 * 9 7 2 11 11 C 1.54391 * 104.61884 * 140.41607 * 10 9 7 12 12 H 1.08992 * 117.61875 * 242.76692 * 11 10 9 13 13 C 1.54285 * 106.22081 * 23.28719 * 11 10 9 14 14 H 1.08999 * 121.81916 * 221.52960 * 13 11 10 15 15 C 1.48144 * 127.84166 * 344.39071 * 9 7 2 16 16 C 1.52997 * 59.72480 * 113.48816 * 13 11 10 17 17 H 1.08997 * 117.40936 * 252.33456 * 16 13 11 18 18 N 1.46503 * 117.44128 * 107.64783 * 16 13 11 19 19 C 1.34770 * 119.99921 * 135.76678 * 18 16 13 20 20 O 1.21279 * 120.00496 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99865 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.46870 * 39.97380 * 21 19 18 23 23 C 1.53042 * 109.46312 * 279.99733 * 21 19 18 24 24 C 1.50810 * 109.18094 * 286.67896 * 23 21 19 25 25 O 1.21239 * 120.01682 * 145.78897 * 24 23 21 26 26 N 1.34559 * 119.97006 * 325.76608 * 24 23 21 27 27 C 1.34342 * 120.98634 * 4.43862 * 26 24 23 28 28 O 1.21538 * 119.21030 * 191.99560 * 27 26 24 29 29 N 1.34292 * 121.58169 * 12.26960 * 27 26 24 30 30 H 0.96998 * 120.00354 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.41030 * 21.63388 * 10 9 7 32 32 H 1.09000 * 110.40754 * 259.20032 * 10 9 7 33 33 H 1.08999 * 110.40767 * 338.37273 * 15 9 7 34 34 H 1.09000 * 110.40516 * 100.67923 * 15 9 7 35 35 H 0.97004 * 119.99719 * 315.75656 * 18 16 13 36 36 H 1.08996 * 109.52247 * 166.77209 * 23 21 19 37 37 H 1.08998 * 109.52022 * 46.59004 * 23 21 19 38 38 H 0.97003 * 119.50832 * 184.45722 * 26 24 23 39 39 H 0.96998 * 119.53443 * 185.41423 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3960 2.1052 -1.3951 5 1 1.5021 2.6212 0.7992 6 1 3.5948 1.4131 0.5960 7 6 2.0103 -1.2021 0.0005 8 1 3.0799 -1.2082 -0.1487 9 7 1.3388 -2.3803 0.1904 10 6 1.8193 -3.7545 -0.0841 11 6 1.2879 -4.5961 1.0961 12 1 2.0207 -5.0690 1.7499 13 6 0.0710 -3.8316 1.6572 14 1 -0.1027 -3.7348 2.7289 15 6 -0.0329 -2.5700 0.7168 16 6 -0.1169 -5.1917 0.9823 17 1 -0.5795 -5.2026 -0.0045 18 7 -0.4378 -6.3335 1.8423 19 6 -1.4001 -7.2032 1.4764 20 8 -2.0008 -7.0405 0.4355 21 6 -1.7306 -8.3774 2.3613 22 1 -1.7108 -8.0629 3.4048 23 6 -0.6987 -9.4865 2.1435 24 6 -0.9484 -10.1402 0.8076 25 8 -0.0165 -10.5503 0.1494 26 7 -2.2061 -10.2685 0.3467 27 6 -3.2453 -9.7437 1.0170 28 8 -4.3755 -10.0589 0.7002 29 7 -3.0655 -8.8749 2.0251 30 1 -0.4850 0.8400 -0.0004 31 1 2.9087 -3.7786 -0.1079 32 1 1.4095 -4.1194 -1.0260 33 1 -0.3409 -1.7003 1.2972 34 1 -0.7323 -2.7477 -0.1001 35 1 0.0425 -6.4636 2.6750 36 1 -0.7903 -10.2298 2.9354 37 1 0.3039 -9.0591 2.1581 38 1 -2.3647 -10.7473 -0.4819 39 1 -3.8308 -8.5750 2.5401 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961917107.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:26 Heat of formation + Delta-G solvation = -25.675420 kcal Electronic energy + Delta-G solvation = -25193.394316 eV Core-core repulsion = 21331.476539 eV Total energy + Delta-G solvation = -3861.917777 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.16964 -39.91642 -39.14812 -38.42938 -36.13653 -34.68704 -34.59187 -32.85886 -31.37909 -30.25629 -27.07965 -26.62341 -25.43751 -23.83109 -22.37549 -21.18574 -20.57571 -20.02957 -19.39772 -18.57566 -18.23487 -17.49230 -16.94865 -16.71074 -16.43439 -16.09175 -15.39971 -15.04130 -14.86548 -14.66240 -14.49583 -13.87163 -13.69356 -13.35352 -12.99020 -12.84891 -12.81238 -12.34278 -11.65428 -11.54914 -11.14238 -11.04004 -10.87534 -10.72763 -10.61887 -10.52446 -10.44191 -10.32424 -10.20297 -9.80989 -9.59626 -9.27541 -8.81485 -8.49359 -6.93104 -5.85097 -3.19843 1.35039 2.01427 2.27206 2.50392 2.86648 2.96118 3.34969 3.40646 3.42659 3.75085 3.88608 4.18542 4.22158 4.39383 4.42580 4.57209 4.78692 5.03742 5.27770 5.29939 5.47946 5.49890 5.72463 5.79592 5.84583 5.92931 6.05401 6.33995 6.41314 6.61286 6.63198 6.79406 6.87352 7.12105 7.25735 7.29613 7.47275 7.65994 7.82169 7.94538 8.14503 9.05275 9.67998 10.44302 11.29156 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.032166 B = 0.002768 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.277496 B =10114.594175 C =10466.609420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.154 3.846 11 C -0.180 4.180 12 H 0.103 0.897 13 C -0.180 4.180 14 H 0.107 0.893 15 C 0.187 3.813 16 C 0.090 3.910 17 H 0.132 0.868 18 N -0.689 5.689 19 C 0.489 3.511 20 O -0.516 6.516 21 C 0.122 3.878 22 H 0.137 0.863 23 C -0.149 4.149 24 C 0.524 3.476 25 O -0.494 6.494 26 N -0.670 5.670 27 C 0.726 3.274 28 O -0.554 6.554 29 N -0.705 5.705 30 H 0.255 0.745 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.090 0.910 34 H 0.030 0.970 35 H 0.400 0.600 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.428 0.572 39 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 -19.580 10.842 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.315 5.315 10 C 0.028 3.972 11 C -0.202 4.202 12 H 0.121 0.879 13 C -0.202 4.202 14 H 0.125 0.875 15 C 0.061 3.939 16 C -0.015 4.015 17 H 0.149 0.851 18 N -0.339 5.339 19 C 0.272 3.728 20 O -0.390 6.390 21 C 0.011 3.989 22 H 0.154 0.846 23 C -0.190 4.190 24 C 0.311 3.689 25 O -0.366 6.366 26 N -0.339 5.339 27 C 0.426 3.574 28 O -0.428 6.428 29 N -0.364 5.364 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.108 0.892 34 H 0.048 0.952 35 H 0.234 0.766 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.270 0.730 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -2.683 -19.528 9.580 21.916 hybrid contribution 0.407 0.810 0.441 1.008 sum -2.276 -18.718 10.021 21.353 Atomic orbital electron populations 1.69890 1.05087 1.25546 1.55480 1.24913 0.95646 0.98057 1.01557 0.86089 0.78739 0.83201 0.77625 1.21440 1.21535 1.20484 1.18994 0.90856 0.82229 1.43676 0.90467 1.45123 1.13584 0.99978 1.72847 1.21142 0.97313 0.85893 0.92883 1.24277 0.90114 1.02422 1.03344 0.87861 1.25472 1.01645 0.93017 1.00039 0.87534 1.21651 0.86840 0.92260 0.93154 1.21958 0.99163 0.84442 0.95981 0.85078 1.45362 1.37673 1.26185 1.24658 1.20911 0.80530 0.83957 0.87417 1.90797 1.50023 1.74102 1.24043 1.21088 0.83701 0.92654 1.01415 0.84573 1.22255 1.01986 0.98712 0.96055 1.20735 0.82164 0.77941 0.88019 1.90825 1.41723 1.46124 1.57917 1.44145 1.07127 1.54580 1.28092 1.15503 0.84119 0.78699 0.79098 1.91048 1.21307 1.63709 1.66734 1.44708 1.09589 1.46475 1.35675 0.93460 0.92870 0.95492 0.89209 0.95242 0.76597 0.85267 0.85023 0.73041 0.73118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.35 10.87 55.49 0.60 -25.75 16 2 C 0.00 -0.12 5.40 -17.43 -0.09 -0.22 16 3 Si 0.91 21.51 29.56 -169.99 -5.03 16.49 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.23 -6.26 10.35 -15.06 -0.16 -6.41 16 8 H 0.08 2.03 7.85 -52.48 -0.41 1.62 16 9 N -0.59 -14.76 3.38 -166.73 -0.56 -15.32 16 10 C 0.15 3.13 7.04 -2.41 -0.02 3.11 16 11 C -0.18 -2.92 6.98 -89.22 -0.62 -3.54 16 12 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.18 -3.13 7.34 -87.38 -0.64 -3.77 16 14 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 15 C 0.19 4.37 5.76 -0.57 0.00 4.36 16 16 C 0.09 1.36 5.92 -67.93 -0.40 0.96 16 17 H 0.13 2.38 7.40 -51.93 -0.38 2.00 16 18 N -0.69 -7.08 5.56 -53.81 -0.30 -7.38 16 19 C 0.49 5.30 6.71 -10.99 -0.07 5.22 16 20 O -0.52 -8.30 15.71 5.56 0.09 -8.21 16 21 C 0.12 0.68 3.64 -69.13 -0.25 0.43 16 22 H 0.14 0.14 8.14 -51.93 -0.42 -0.28 16 23 C -0.15 -0.73 5.71 -27.81 -0.16 -0.89 16 24 C 0.52 5.02 7.44 -11.03 -0.08 4.94 16 25 O -0.49 -6.42 17.93 5.59 0.10 -6.32 16 26 N -0.67 -6.62 5.18 -16.01 -0.08 -6.70 16 27 C 0.73 7.79 7.98 -87.74 -0.70 7.09 16 28 O -0.55 -7.85 17.97 5.33 0.10 -7.75 16 29 N -0.71 -5.27 4.89 -60.13 -0.29 -5.57 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 2.34 6.52 -51.93 -0.34 2.00 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 2.57 8.83 -40.82 -0.36 2.21 16 36 H 0.13 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.13 0.52 8.07 -51.93 -0.42 0.10 16 38 H 0.43 3.96 8.86 -40.82 -0.36 3.60 16 39 H 0.43 2.46 8.90 -40.82 -0.36 2.10 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -37.55 334.38 -8.28 -45.83 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.73 Total: 4.36 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -3.20 Total: 11.29 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.64 Total: -60.72 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.28 Total: -22.28 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.55 -8.28 -45.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961917107.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.151 kcal (2) G-P(sol) polarization free energy of solvation -37.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds