Wall clock time and date at job start Fri Apr 10 2020 17:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48497 * 109.47334 * 274.81080 * 3 2 1 5 5 H 1.48501 * 109.47253 * 34.81024 * 3 2 1 6 6 H 1.48499 * 109.47293 * 154.80711 * 3 2 1 7 7 C 1.38810 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00312 * 170.82007 * 7 2 1 9 9 N 1.36933 * 119.99758 * 350.81426 * 7 2 1 10 10 C 1.48147 * 127.83448 * 164.39036 * 9 7 2 11 11 C 1.54391 * 104.61884 * 140.41607 * 10 9 7 12 12 H 1.08992 * 117.61875 * 242.76692 * 11 10 9 13 13 C 1.54285 * 106.22081 * 23.28719 * 11 10 9 14 14 H 1.08999 * 121.81916 * 221.52960 * 13 11 10 15 15 C 1.48144 * 127.84166 * 344.39071 * 9 7 2 16 16 C 1.52997 * 59.72480 * 113.48816 * 13 11 10 17 17 H 1.08997 * 117.40936 * 252.33456 * 16 13 11 18 18 N 1.46503 * 117.44128 * 107.64783 * 16 13 11 19 19 C 1.34770 * 119.99921 * 135.76678 * 18 16 13 20 20 O 1.21279 * 120.00496 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99865 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.46870 * 39.97380 * 21 19 18 23 23 C 1.53042 * 109.46312 * 279.99733 * 21 19 18 24 24 C 1.50810 * 109.18094 * 286.67896 * 23 21 19 25 25 O 1.21239 * 120.01682 * 145.78897 * 24 23 21 26 26 N 1.34559 * 119.97006 * 325.76608 * 24 23 21 27 27 C 1.34342 * 120.98634 * 4.43862 * 26 24 23 28 28 O 1.21538 * 119.21030 * 191.99560 * 27 26 24 29 29 N 1.34292 * 121.58169 * 12.26960 * 27 26 24 30 30 H 0.96998 * 120.00354 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.41030 * 21.63388 * 10 9 7 32 32 H 1.09000 * 110.40754 * 259.20032 * 10 9 7 33 33 H 1.08999 * 110.40767 * 338.37273 * 15 9 7 34 34 H 1.09000 * 110.40516 * 100.67923 * 15 9 7 35 35 H 0.97004 * 119.99719 * 315.75656 * 18 16 13 36 36 H 1.08996 * 109.52247 * 166.77209 * 23 21 19 37 37 H 1.08998 * 109.52022 * 46.59004 * 23 21 19 38 38 H 0.97003 * 119.50832 * 184.45722 * 26 24 23 39 39 H 0.96998 * 119.53443 * 185.41423 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3960 2.1052 -1.3951 5 1 1.5021 2.6212 0.7992 6 1 3.5948 1.4131 0.5960 7 6 2.0103 -1.2021 0.0005 8 1 3.0799 -1.2082 -0.1487 9 7 1.3388 -2.3803 0.1904 10 6 1.8193 -3.7545 -0.0841 11 6 1.2879 -4.5961 1.0961 12 1 2.0207 -5.0690 1.7499 13 6 0.0710 -3.8316 1.6572 14 1 -0.1027 -3.7348 2.7289 15 6 -0.0329 -2.5700 0.7168 16 6 -0.1169 -5.1917 0.9823 17 1 -0.5795 -5.2026 -0.0045 18 7 -0.4378 -6.3335 1.8423 19 6 -1.4001 -7.2032 1.4764 20 8 -2.0008 -7.0405 0.4355 21 6 -1.7306 -8.3774 2.3613 22 1 -1.7108 -8.0629 3.4048 23 6 -0.6987 -9.4865 2.1435 24 6 -0.9484 -10.1402 0.8076 25 8 -0.0165 -10.5503 0.1494 26 7 -2.2061 -10.2685 0.3467 27 6 -3.2453 -9.7437 1.0170 28 8 -4.3755 -10.0589 0.7002 29 7 -3.0655 -8.8749 2.0251 30 1 -0.4850 0.8400 -0.0004 31 1 2.9087 -3.7786 -0.1079 32 1 1.4095 -4.1194 -1.0260 33 1 -0.3409 -1.7003 1.2972 34 1 -0.7323 -2.7477 -0.1001 35 1 0.0425 -6.4636 2.6750 36 1 -0.7903 -10.2298 2.9354 37 1 0.3039 -9.0591 2.1581 38 1 -2.3647 -10.7473 -0.4819 39 1 -3.8308 -8.5750 2.5401 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961917107.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:26 Heat of formation + Delta-G solvation = -58.789921 kcal Electronic energy + Delta-G solvation = -25194.830269 eV Core-core repulsion = 21331.476539 eV Total energy + Delta-G solvation = -3863.353729 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.89903 -40.99615 -39.97642 -39.75524 -36.95651 -36.11541 -35.36966 -34.39013 -32.44203 -31.58763 -28.77327 -27.86995 -26.76537 -24.59367 -23.71032 -22.28211 -21.99530 -20.92446 -20.76477 -19.31756 -19.07213 -18.83691 -18.21458 -17.65208 -17.37012 -16.96915 -16.72223 -16.17882 -15.89124 -15.69127 -15.41192 -15.35857 -14.96324 -14.64110 -14.50658 -13.78963 -13.55065 -13.37090 -13.32521 -13.16483 -12.85063 -12.73274 -12.08075 -12.02837 -11.96072 -11.88871 -11.68567 -11.59416 -11.40738 -11.38222 -10.83767 -10.75333 -10.32670 -9.72715 -8.93420 -7.92879 -5.30045 0.61054 1.28191 1.46570 1.47646 1.48655 1.58413 1.74472 2.14061 2.24540 2.48047 2.86181 3.24407 3.27204 3.37043 3.51086 3.66015 3.85401 3.96111 4.09597 4.10070 4.22995 4.39247 4.44848 4.51827 4.78710 4.86226 4.91602 4.99284 5.17744 5.28744 5.40217 5.44066 5.53613 5.64086 5.75169 6.15806 6.15945 6.41243 6.47608 6.99257 7.07715 7.17098 7.66490 8.44536 9.20844 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.032166 B = 0.002768 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.277496 B =10114.594175 C =10466.609420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.264 1.264 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.617 5.617 10 C 0.144 3.856 11 C -0.159 4.159 12 H 0.148 0.852 13 C -0.179 4.179 14 H 0.137 0.863 15 C 0.187 3.813 16 C 0.112 3.888 17 H 0.094 0.906 18 N -0.669 5.669 19 C 0.483 3.517 20 O -0.576 6.576 21 C 0.135 3.865 22 H 0.205 0.795 23 C -0.141 4.141 24 C 0.516 3.484 25 O -0.537 6.537 26 N -0.675 5.675 27 C 0.723 3.277 28 O -0.597 6.597 29 N -0.693 5.693 30 H 0.250 0.750 31 H 0.065 0.935 32 H 0.012 0.988 33 H 0.056 0.944 34 H -0.008 1.008 35 H 0.427 0.573 36 H 0.178 0.822 37 H 0.152 0.848 38 H 0.424 0.576 39 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 -21.027 14.339 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.809 3.191 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.341 5.341 10 C 0.019 3.981 11 C -0.179 4.179 12 H 0.165 0.835 13 C -0.200 4.200 14 H 0.155 0.845 15 C 0.061 3.939 16 C 0.004 3.996 17 H 0.112 0.888 18 N -0.320 5.320 19 C 0.268 3.732 20 O -0.454 6.454 21 C 0.026 3.974 22 H 0.221 0.779 23 C -0.181 4.181 24 C 0.306 3.694 25 O -0.412 6.412 26 N -0.343 5.343 27 C 0.423 3.577 28 O -0.475 6.475 29 N -0.352 5.352 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.009 0.991 35 H 0.266 0.734 36 H 0.195 0.805 37 H 0.170 0.830 38 H 0.264 0.736 39 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -0.916 -21.008 13.156 24.804 hybrid contribution -0.151 1.215 -0.768 1.446 sum -1.067 -19.793 12.388 23.374 Atomic orbital electron populations 1.70104 1.06656 1.25790 1.57101 1.25777 0.96464 1.01442 1.01986 0.85026 0.77997 0.78783 0.77258 1.21591 1.21853 1.18823 1.19418 0.91464 0.83473 1.42677 0.89820 1.45430 1.13990 1.01176 1.73489 1.21309 0.98127 0.84512 0.94196 1.24170 0.90816 1.01497 1.01455 0.83474 1.25110 1.03536 0.91143 1.00212 0.84514 1.21377 0.85768 0.94081 0.92722 1.21352 0.98035 0.85129 0.95087 0.88802 1.45068 1.37831 1.24253 1.24861 1.22017 0.79233 0.84783 0.87159 1.90801 1.52004 1.75645 1.26928 1.21427 0.82544 0.90289 1.03139 0.77861 1.22493 1.02495 0.99061 0.94026 1.21754 0.81114 0.77142 0.89439 1.90809 1.42619 1.48195 1.59535 1.44271 1.07615 1.54337 1.28030 1.15715 0.83504 0.78997 0.79441 1.91016 1.22961 1.65363 1.68143 1.44712 1.11124 1.44980 1.34368 0.94119 0.91621 0.96998 0.92601 0.99057 0.73425 0.80486 0.83005 0.73560 0.72014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.02 10.87 21.65 0.24 -56.79 16 2 C -0.06 -3.55 5.40 84.86 0.46 -3.09 16 3 Si 0.98 44.88 29.56 68.60 2.03 46.91 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.24 -13.37 10.35 84.03 0.87 -12.50 16 8 H 0.08 4.39 7.85 -2.91 -0.02 4.36 16 9 N -0.62 -31.39 3.38 -681.41 -2.30 -33.69 16 10 C 0.14 5.78 7.04 86.53 0.61 6.39 16 11 C -0.16 -4.69 6.98 -9.88 -0.07 -4.76 16 12 H 0.15 3.16 8.14 -2.39 -0.02 3.14 16 13 C -0.18 -5.92 7.34 -8.70 -0.06 -5.99 16 14 H 0.14 3.74 8.14 -2.39 -0.02 3.72 16 15 C 0.19 9.06 5.76 87.73 0.51 9.57 16 16 C 0.11 3.18 5.92 44.99 0.27 3.44 16 17 H 0.09 3.50 7.40 -2.39 -0.02 3.49 16 18 N -0.67 -10.89 5.56 -442.54 -2.46 -13.35 16 19 C 0.48 8.87 6.71 87.66 0.59 9.46 16 20 O -0.58 -18.18 15.71 -3.03 -0.05 -18.22 16 21 C 0.13 0.80 3.64 44.28 0.16 0.97 16 22 H 0.20 -1.31 8.14 -2.39 -0.02 -1.33 16 23 C -0.14 -0.64 5.71 29.90 0.17 -0.47 16 24 C 0.52 8.84 7.44 87.73 0.65 9.49 16 25 O -0.54 -13.45 17.93 -2.90 -0.05 -13.51 16 26 N -0.67 -12.96 5.18 -441.64 -2.29 -15.25 16 27 C 0.72 14.80 7.98 179.34 1.43 16.23 16 28 O -0.60 -17.08 17.97 -3.83 -0.07 -17.15 16 29 N -0.69 -8.20 4.89 -462.71 -2.26 -10.46 16 30 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 3.05 6.52 -2.39 -0.02 3.04 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.43 2.64 8.83 -92.71 -0.82 1.82 16 36 H 0.18 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.15 0.23 8.07 -2.39 -0.02 0.21 16 38 H 0.42 8.24 8.86 -92.71 -0.82 7.42 16 39 H 0.44 3.64 8.90 -92.71 -0.83 2.81 16 Total: -1.00 -91.31 334.38 -2.96 -94.27 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -1.33 Total: 8.49 kcal Atomic # 6 Polarization: 23.16 SS G_CDS: 5.58 Total: 28.75 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -9.08 Total: -129.54 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.17 Total: -48.88 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -91.31 -2.96 -94.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961917107.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.481 kcal (2) G-P(sol) polarization free energy of solvation -91.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds