Wall clock time and date at job start Fri Apr 10 2020 17:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00012 * 2 1 4 4 H 1.48495 * 109.47257 * 270.00279 * 3 2 1 5 5 H 1.48502 * 109.46996 * 30.00408 * 3 2 1 6 6 H 1.48505 * 109.47103 * 150.00162 * 3 2 1 7 7 C 1.38810 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00032 * 189.09862 * 7 2 1 9 9 N 1.36933 * 120.00233 * 9.09134 * 7 2 1 10 10 C 1.48153 * 127.83596 * 15.57675 * 9 7 2 11 11 C 1.54391 * 104.61752 * 140.41095 * 10 9 7 12 12 H 1.08999 * 117.61794 * 244.78467 * 11 10 9 13 13 C 1.54282 * 104.95682 * 23.87039 * 11 10 9 14 14 H 1.09005 * 121.81318 * 223.07601 * 13 11 10 15 15 C 1.48147 * 127.84310 * 195.57558 * 9 7 2 16 16 C 1.52996 * 118.11993 * 87.19406 * 11 10 9 17 17 H 1.09002 * 117.44236 * 16.10622 * 16 11 10 18 18 N 1.46498 * 117.44639 * 160.80914 * 16 11 10 19 19 C 1.34776 * 120.00276 * 224.24161 * 18 16 11 20 20 O 1.21279 * 119.99759 * 359.97438 * 19 18 16 21 21 C 1.50696 * 119.99844 * 179.97438 * 19 18 16 22 22 N 1.46506 * 109.47003 * 179.97438 * 21 19 18 23 23 C 1.34767 * 124.17738 * 269.72540 * 22 21 19 24 24 O 1.21233 * 127.15846 * 0.02562 * 23 22 21 25 25 C 1.51582 * 105.68480 * 179.97438 * 23 22 21 26 26 N 1.47314 * 103.59298 * 0.32569 * 25 23 22 27 27 C 1.33787 * 124.17617 * 90.02299 * 22 21 19 28 28 O 1.21542 * 123.77253 * 359.96609 * 27 22 21 29 29 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.40665 * 259.20224 * 10 9 7 31 31 H 1.09005 * 110.40345 * 21.62890 * 10 9 7 32 32 H 1.08997 * 110.40325 * 338.36794 * 15 9 7 33 33 H 1.08998 * 110.40477 * 100.79817 * 15 9 7 34 34 H 0.97002 * 119.99821 * 44.23767 * 18 16 11 35 35 H 1.08994 * 109.47585 * 299.99798 * 21 19 18 36 36 H 1.09002 * 109.47436 * 59.99966 * 21 19 18 37 37 H 1.08993 * 110.77122 * 241.71778 * 25 23 22 38 38 H 1.09001 * 110.56426 * 118.82738 * 25 23 22 39 39 H 0.96999 * 126.69499 * 179.77250 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0800 -1.2080 0.1474 9 7 1.3385 -2.3805 -0.1884 10 6 -0.0343 -2.5705 -0.7122 11 6 0.0637 -3.8160 -1.6192 12 1 -0.1156 -3.6798 -2.6857 13 6 1.2859 -4.5967 -1.0930 14 1 2.0173 -5.0420 -1.7676 15 6 1.8195 -3.7546 0.0858 16 6 -0.1185 -5.1924 -0.9764 17 1 -0.5683 -5.2278 0.0159 18 7 -0.4528 -6.3117 -1.8605 19 6 -1.4124 -7.1885 -1.5043 20 8 -1.9988 -7.0511 -0.4517 21 6 -1.7565 -8.3395 -2.4141 22 7 -2.8211 -9.1414 -1.8057 23 6 -2.6053 -10.1899 -0.9871 24 8 -1.5344 -10.6306 -0.6284 25 6 -3.9802 -10.7029 -0.6071 26 7 -4.8969 -9.8039 -1.3293 27 6 -4.1274 -8.9266 -1.9988 28 8 -4.5696 -8.0393 -2.7019 29 1 -0.4850 0.8401 0.0004 30 1 -0.7318 -2.7500 0.1060 31 1 -0.3434 -1.7011 -1.2925 32 1 2.9090 -3.7785 0.1075 33 1 1.4116 -4.1190 1.0286 34 1 0.0165 -6.4217 -2.7023 35 1 -2.0959 -7.9539 -3.3754 36 1 -0.8738 -8.9614 -2.5632 37 1 -4.1373 -10.6270 0.4688 38 1 -4.1105 -11.7323 -0.9409 39 1 -5.8663 -9.8376 -1.3231 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962482110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:31 Heat of formation + Delta-G solvation = -1.250504 kcal Electronic energy + Delta-G solvation = -24881.865393 eV Core-core repulsion = 21021.006760 eV Total energy + Delta-G solvation = -3860.858633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.67252 -39.81864 -38.87700 -38.34290 -36.39652 -34.97522 -34.51171 -32.72181 -30.46673 -28.96947 -27.82477 -27.15143 -25.58534 -23.27461 -22.54227 -21.19986 -20.57919 -20.04629 -19.27992 -18.39588 -17.96936 -17.16913 -16.86587 -16.59370 -16.44279 -15.67879 -15.54006 -15.11630 -14.70472 -14.49486 -14.38216 -14.24632 -13.69138 -13.47599 -13.24482 -12.78805 -12.66345 -12.22703 -11.57543 -11.48547 -11.33267 -11.00680 -10.83398 -10.73787 -10.61768 -10.42131 -10.21497 -10.15978 -9.91481 -9.74588 -9.68417 -9.18137 -8.75738 -8.38341 -6.87207 -5.79155 -3.14039 1.30678 1.70888 2.45510 2.60258 2.77646 3.12997 3.38947 3.43831 3.46162 3.62459 4.24937 4.37695 4.45185 4.50328 4.58176 4.72178 4.80091 5.04742 5.12742 5.23700 5.36148 5.37278 5.56035 5.82003 5.88845 6.09397 6.23175 6.38038 6.49845 6.65225 6.67439 6.75170 6.87825 6.99649 7.36233 7.43714 7.54253 7.72057 7.77582 8.12046 8.20667 9.10892 9.73678 10.50521 11.35057 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.033095 B = 0.002605 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.834278 B =10747.649082 C =11141.572035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.184 3.816 11 C -0.181 4.181 12 H 0.104 0.896 13 C -0.183 4.183 14 H 0.105 0.895 15 C 0.155 3.845 16 C 0.099 3.901 17 H 0.132 0.868 18 N -0.692 5.692 19 C 0.503 3.497 20 O -0.528 6.528 21 C 0.101 3.899 22 N -0.561 5.561 23 C 0.526 3.474 24 O -0.466 6.466 25 C 0.066 3.934 26 N -0.728 5.728 27 C 0.707 3.293 28 O -0.537 6.537 29 H 0.255 0.745 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.027 0.973 34 H 0.401 0.599 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 -24.156 -6.182 25.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.058 3.942 11 C -0.202 4.202 12 H 0.122 0.878 13 C -0.204 4.204 14 H 0.123 0.877 15 C 0.029 3.971 16 C -0.006 4.006 17 H 0.149 0.851 18 N -0.341 5.341 19 C 0.287 3.713 20 O -0.403 6.403 21 C -0.024 4.024 22 N -0.307 5.307 23 C 0.313 3.687 24 O -0.335 6.335 25 C -0.062 4.062 26 N -0.393 5.393 27 C 0.407 3.593 28 O -0.409 6.409 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.235 0.765 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.317 -23.490 -5.579 25.228 hybrid contribution 0.288 0.787 -0.505 0.979 sum -7.029 -22.702 -6.084 24.532 Atomic orbital electron populations 1.69898 1.05067 1.25486 1.55556 1.24915 0.95648 0.98021 1.01677 0.86098 0.78679 0.83218 0.77615 1.21503 1.21639 1.20528 1.18995 0.90822 0.82286 1.43565 0.90485 1.45190 1.13328 0.99964 1.73144 1.21072 0.86887 0.92530 0.93695 1.24736 1.02018 0.92796 1.00661 0.87839 1.24328 0.90167 1.02544 1.03352 0.87718 1.21123 0.97228 0.85893 0.92905 1.21852 0.98565 0.84765 0.95436 0.85082 1.45246 1.38298 1.27184 1.23348 1.20625 0.79931 0.83376 0.87370 1.90738 1.51093 1.74255 1.24218 1.21453 0.91198 0.92555 0.97226 1.45795 1.07699 1.30779 1.46460 1.20898 0.91598 0.79214 0.76960 1.90840 1.28953 1.60647 1.53062 1.22443 0.86166 0.96672 1.00876 1.45342 1.09318 1.33503 1.51129 1.15762 0.80826 0.82121 0.80549 1.91048 1.75133 1.33263 1.41501 0.93490 0.95614 0.89048 0.92900 0.95540 0.76526 0.85374 0.85574 0.85642 0.85790 0.71312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.10 10.86 55.49 0.60 -26.50 16 2 C -0.01 -0.15 5.40 -17.44 -0.09 -0.24 16 3 Si 0.91 22.05 29.56 -169.99 -5.03 17.02 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.40 10.35 -15.06 -0.16 -6.56 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.66 16 9 N -0.59 -15.34 3.38 -168.86 -0.57 -15.92 16 10 C 0.18 4.53 5.70 -2.40 -0.01 4.51 16 11 C -0.18 -3.47 7.06 -89.22 -0.63 -4.10 16 12 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 13 C -0.18 -3.21 7.05 -89.22 -0.63 -3.84 16 14 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 15 C 0.16 3.29 7.04 -2.41 -0.02 3.27 16 16 C 0.10 1.70 5.98 -67.93 -0.41 1.29 16 17 H 0.13 2.58 7.40 -51.93 -0.38 2.19 16 18 N -0.69 -9.06 5.56 -53.81 -0.30 -9.36 16 19 C 0.50 7.06 7.90 -10.99 -0.09 6.97 16 20 O -0.53 -9.77 16.00 5.56 0.09 -9.68 16 21 C 0.10 0.97 6.18 -5.19 -0.03 0.94 16 22 N -0.56 -5.86 2.09 -122.02 -0.26 -6.12 16 23 C 0.53 4.94 8.31 -10.56 -0.09 4.85 16 24 O -0.47 -5.66 17.75 5.60 0.10 -5.56 16 25 C 0.07 0.31 7.97 -4.31 -0.03 0.28 16 26 N -0.73 -4.65 6.58 -65.74 -0.43 -5.08 16 27 C 0.71 7.80 8.62 -88.02 -0.76 7.04 16 28 O -0.54 -7.97 17.48 5.33 0.09 -7.87 16 29 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 2.49 6.51 -51.93 -0.34 2.16 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.40 3.78 8.83 -40.82 -0.36 3.42 16 35 H 0.13 1.00 7.86 -51.93 -0.41 0.59 16 36 H 0.13 0.86 8.00 -51.93 -0.42 0.45 16 37 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.12 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.44 1.69 8.96 -40.82 -0.37 1.33 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -38.43 338.88 -8.32 -46.75 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.78 Total: 2.80 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: -2.95 Total: 14.41 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.96 Total: -62.97 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.28 Total: -23.11 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.43 -8.32 -46.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962482110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.499 kcal (2) G-P(sol) polarization free energy of solvation -38.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds