Wall clock time and date at job start Fri Apr 10 2020 17:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00012 * 2 1 4 4 H 1.48495 * 109.47257 * 270.00279 * 3 2 1 5 5 H 1.48502 * 109.46996 * 30.00408 * 3 2 1 6 6 H 1.48505 * 109.47103 * 150.00162 * 3 2 1 7 7 C 1.38810 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00032 * 189.09862 * 7 2 1 9 9 N 1.36933 * 120.00233 * 9.09134 * 7 2 1 10 10 C 1.48153 * 127.83596 * 15.57675 * 9 7 2 11 11 C 1.54391 * 104.61752 * 140.41095 * 10 9 7 12 12 H 1.08999 * 117.61794 * 244.78467 * 11 10 9 13 13 C 1.54282 * 104.95682 * 23.87039 * 11 10 9 14 14 H 1.09005 * 121.81318 * 223.07601 * 13 11 10 15 15 C 1.48147 * 127.84310 * 195.57558 * 9 7 2 16 16 C 1.52996 * 118.11993 * 87.19406 * 11 10 9 17 17 H 1.09002 * 117.44236 * 16.10622 * 16 11 10 18 18 N 1.46498 * 117.44639 * 160.80914 * 16 11 10 19 19 C 1.34776 * 120.00276 * 224.24161 * 18 16 11 20 20 O 1.21279 * 119.99759 * 359.97438 * 19 18 16 21 21 C 1.50696 * 119.99844 * 179.97438 * 19 18 16 22 22 N 1.46506 * 109.47003 * 179.97438 * 21 19 18 23 23 C 1.34767 * 124.17738 * 269.72540 * 22 21 19 24 24 O 1.21233 * 127.15846 * 0.02562 * 23 22 21 25 25 C 1.51582 * 105.68480 * 179.97438 * 23 22 21 26 26 N 1.47314 * 103.59298 * 0.32569 * 25 23 22 27 27 C 1.33787 * 124.17617 * 90.02299 * 22 21 19 28 28 O 1.21542 * 123.77253 * 359.96609 * 27 22 21 29 29 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.40665 * 259.20224 * 10 9 7 31 31 H 1.09005 * 110.40345 * 21.62890 * 10 9 7 32 32 H 1.08997 * 110.40325 * 338.36794 * 15 9 7 33 33 H 1.08998 * 110.40477 * 100.79817 * 15 9 7 34 34 H 0.97002 * 119.99821 * 44.23767 * 18 16 11 35 35 H 1.08994 * 109.47585 * 299.99798 * 21 19 18 36 36 H 1.09002 * 109.47436 * 59.99966 * 21 19 18 37 37 H 1.08993 * 110.77122 * 241.71778 * 25 23 22 38 38 H 1.09001 * 110.56426 * 118.82738 * 25 23 22 39 39 H 0.96999 * 126.69499 * 179.77250 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0800 -1.2080 0.1474 9 7 1.3385 -2.3805 -0.1884 10 6 -0.0343 -2.5705 -0.7122 11 6 0.0637 -3.8160 -1.6192 12 1 -0.1156 -3.6798 -2.6857 13 6 1.2859 -4.5967 -1.0930 14 1 2.0173 -5.0420 -1.7676 15 6 1.8195 -3.7546 0.0858 16 6 -0.1185 -5.1924 -0.9764 17 1 -0.5683 -5.2278 0.0159 18 7 -0.4528 -6.3117 -1.8605 19 6 -1.4124 -7.1885 -1.5043 20 8 -1.9988 -7.0511 -0.4517 21 6 -1.7565 -8.3395 -2.4141 22 7 -2.8211 -9.1414 -1.8057 23 6 -2.6053 -10.1899 -0.9871 24 8 -1.5344 -10.6306 -0.6284 25 6 -3.9802 -10.7029 -0.6071 26 7 -4.8969 -9.8039 -1.3293 27 6 -4.1274 -8.9266 -1.9988 28 8 -4.5696 -8.0393 -2.7019 29 1 -0.4850 0.8401 0.0004 30 1 -0.7318 -2.7500 0.1060 31 1 -0.3434 -1.7011 -1.2925 32 1 2.9090 -3.7785 0.1075 33 1 1.4116 -4.1190 1.0286 34 1 0.0165 -6.4217 -2.7023 35 1 -2.0959 -7.9539 -3.3754 36 1 -0.8738 -8.9614 -2.5632 37 1 -4.1373 -10.6270 0.4688 38 1 -4.1105 -11.7323 -0.9409 39 1 -5.8663 -9.8376 -1.3231 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962482110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:31 Heat of formation + Delta-G solvation = -32.813075 kcal Electronic energy + Delta-G solvation = -24883.234049 eV Core-core repulsion = 21021.006760 eV Total energy + Delta-G solvation = -3862.227289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.39596 -41.12831 -39.83117 -39.67295 -37.21315 -36.17779 -35.65228 -34.42148 -32.26382 -29.87730 -28.95443 -28.46584 -27.48466 -24.10933 -23.83876 -22.47430 -22.02238 -21.17954 -20.88520 -19.14011 -18.91974 -18.83132 -18.00029 -17.59357 -17.45683 -16.81426 -16.47982 -16.32830 -16.15257 -15.61366 -15.33159 -15.28010 -14.99846 -14.86565 -14.67116 -14.09540 -13.81969 -13.55664 -13.36638 -13.15663 -12.92659 -12.72356 -12.19276 -12.16917 -12.05392 -11.91522 -11.75678 -11.69706 -11.39443 -10.91271 -10.80789 -10.69147 -10.41329 -9.79923 -8.95505 -7.93350 -5.31177 0.60751 0.99480 1.35100 1.45876 1.48270 1.57305 1.73434 2.10618 2.28884 2.47339 2.79699 3.03927 3.26279 3.47140 3.61464 3.74268 3.81951 3.89794 4.09365 4.13439 4.28729 4.32016 4.32587 4.37053 4.49636 4.66677 4.76330 4.85806 4.96629 5.24981 5.36663 5.42015 5.49525 5.61263 5.82129 5.96203 6.13953 6.29928 6.40623 6.97389 7.04993 7.08951 7.64980 8.43275 9.20581 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.033095 B = 0.002605 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.834278 B =10747.649082 C =11141.572035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.984 3.016 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.242 4.242 8 H 0.086 0.914 9 N -0.617 5.617 10 C 0.188 3.812 11 C -0.188 4.188 12 H 0.125 0.875 13 C -0.155 4.155 14 H 0.146 0.854 15 C 0.146 3.854 16 C 0.118 3.882 17 H 0.101 0.899 18 N -0.675 5.675 19 C 0.498 3.502 20 O -0.579 6.579 21 C 0.104 3.896 22 N -0.569 5.569 23 C 0.518 3.482 24 O -0.498 6.498 25 C 0.075 3.925 26 N -0.709 5.709 27 C 0.698 3.302 28 O -0.585 6.585 29 H 0.250 0.750 30 H -0.010 1.010 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.017 0.983 34 H 0.423 0.577 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 -26.654 -7.361 28.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.812 3.188 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.370 4.370 8 H 0.104 0.896 9 N -0.341 5.341 10 C 0.062 3.938 11 C -0.209 4.209 12 H 0.143 0.857 13 C -0.176 4.176 14 H 0.164 0.836 15 C 0.021 3.979 16 C 0.011 3.989 17 H 0.119 0.881 18 N -0.326 5.326 19 C 0.284 3.716 20 O -0.458 6.458 21 C -0.021 4.021 22 N -0.314 5.314 23 C 0.308 3.692 24 O -0.370 6.370 25 C -0.051 4.051 26 N -0.374 5.374 27 C 0.398 3.602 28 O -0.461 6.461 29 H 0.059 0.941 30 H 0.008 0.992 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.166 0.834 38 H 0.187 0.813 39 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -6.397 -26.073 -6.775 27.688 hybrid contribution -0.025 1.485 -0.043 1.485 sum -6.422 -24.588 -6.819 26.312 Atomic orbital electron populations 1.70116 1.06735 1.25812 1.57113 1.25820 0.96490 1.01573 1.01981 0.84999 0.77697 0.78497 0.77634 1.20959 1.22267 1.18961 1.19433 0.91487 0.83408 1.42681 0.89640 1.45499 1.13601 1.01263 1.73704 1.20772 0.86100 0.93880 0.93040 1.24413 1.04424 0.91495 1.00567 0.85742 1.24249 0.90485 1.01184 1.01666 0.83627 1.21293 0.98243 0.84333 0.94039 1.21340 0.97987 0.84908 0.94656 0.88129 1.45018 1.38354 1.25623 1.23598 1.21499 0.78872 0.84005 0.87204 1.90718 1.52776 1.75595 1.26666 1.21619 0.92602 0.91399 0.96493 1.45981 1.07725 1.31025 1.46707 1.21646 0.92927 0.78616 0.76041 1.90823 1.30551 1.61528 1.54089 1.22729 0.82583 0.97912 1.01862 1.45347 1.10007 1.32391 1.49636 1.16032 0.81287 0.82253 0.80627 1.91011 1.75880 1.35432 1.43826 0.94125 0.99166 0.92446 0.91279 0.96517 0.73817 0.83320 0.82304 0.83435 0.81328 0.69809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.69 10.86 21.65 0.24 -58.46 16 2 C -0.07 -3.76 5.40 84.86 0.46 -3.30 16 3 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.24 -13.70 10.35 84.03 0.87 -12.83 16 8 H 0.09 4.58 7.84 -2.91 -0.02 4.55 16 9 N -0.62 -32.58 3.38 -688.14 -2.33 -34.91 16 10 C 0.19 9.69 5.70 86.53 0.49 10.18 16 11 C -0.19 -7.15 7.06 -9.89 -0.07 -7.22 16 12 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 13 C -0.16 -5.15 7.05 -9.89 -0.07 -5.22 16 14 H 0.15 3.74 8.14 -2.38 -0.02 3.72 16 15 C 0.15 6.15 7.04 86.53 0.61 6.76 16 16 C 0.12 3.96 5.98 44.99 0.27 4.23 16 17 H 0.10 4.09 7.40 -2.39 -0.02 4.07 16 18 N -0.67 -16.35 5.56 -442.55 -2.46 -18.81 16 19 C 0.50 13.42 7.90 87.66 0.69 14.11 16 20 O -0.58 -21.64 16.00 -3.03 -0.05 -21.69 16 21 C 0.10 1.79 6.18 85.63 0.53 2.32 16 22 N -0.57 -10.96 2.09 -777.21 -1.63 -12.58 16 23 C 0.52 8.64 8.31 87.94 0.73 9.37 16 24 O -0.50 -11.26 17.75 -2.89 -0.05 -11.31 16 25 C 0.08 0.46 7.97 85.76 0.68 1.14 16 26 N -0.71 -7.39 6.58 -480.31 -3.16 -10.55 16 27 C 0.70 14.53 8.62 179.44 1.55 16.08 16 28 O -0.58 -17.23 17.48 -3.85 -0.07 -17.29 16 29 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 30 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.06 3.31 6.51 -2.38 -0.02 3.30 16 32 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.42 6.50 8.83 -92.71 -0.82 5.68 16 35 H 0.15 1.97 7.86 -2.39 -0.02 1.95 16 36 H 0.16 1.67 8.00 -2.39 -0.02 1.65 16 37 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.17 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.45 2.40 8.96 -92.71 -0.83 1.57 16 Total: -1.00 -89.41 338.88 -1.26 -90.67 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -0.53 Total: 11.32 kcal Atomic # 6 Polarization: 28.86 SS G_CDS: 6.74 Total: 35.61 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -9.34 Total: -135.32 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.17 Total: -50.29 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -89.41 -1.26 -90.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962482110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.857 kcal (2) G-P(sol) polarization free energy of solvation -89.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds