Wall clock time and date at job start Fri Apr 10 2020 17:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35664 * 119.95333 * 2 1 4 4 O 1.34677 * 119.10984 * 0.02562 * 3 2 1 5 5 N 1.31848 * 121.77580 * 179.97438 * 3 2 1 6 6 C 1.32570 * 121.60823 * 0.02597 * 5 3 2 7 7 C 1.39420 * 119.70776 * 0.27272 * 6 5 3 8 8 C 1.46893 * 120.82490 * 179.72205 * 7 6 5 9 9 O 1.21672 * 120.00476 * 255.25165 * 8 7 6 10 10 N 1.34776 * 119.99601 * 75.26003 * 8 7 6 11 11 C 1.47022 * 125.64946 * 5.15460 * 10 8 7 12 12 C 1.54330 * 107.26854 * 181.02602 * 11 10 8 13 13 C 1.55151 * 102.94469 * 22.19834 * 12 11 10 14 14 H 1.08997 * 111.00667 * 82.56395 * 13 12 11 15 15 N 1.46497 * 111.00688 * 206.42345 * 13 12 11 16 16 C 1.36940 * 120.00315 * 205.00070 * 15 13 12 17 17 H 1.08002 * 119.99374 * 359.97438 * 16 15 13 18 18 C 1.38804 * 119.99962 * 179.97438 * 16 15 13 19 19 N 1.31622 * 120.00229 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99851 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46894 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47091 * 120.00096 * 20 18 16 23 23 H 1.48501 * 109.47246 * 239.99842 * 20 18 16 24 24 C 1.47424 * 125.64700 * 184.85615 * 10 8 7 25 25 C 1.35015 * 119.95655 * 180.02562 * 2 1 3 26 26 O 1.21833 * 120.76912 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.46970 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47500 * 120.00004 * 1 2 3 29 29 H 1.09002 * 109.46453 * 239.99759 * 1 2 3 30 30 H 0.96700 * 117.00021 * 179.97438 * 4 3 2 31 31 H 1.08008 * 120.14275 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.88488 * 300.44173 * 11 10 8 33 33 H 1.08999 * 109.87836 * 61.61604 * 11 10 8 34 34 H 1.08999 * 110.71304 * 140.55751 * 12 11 10 35 35 H 1.08995 * 110.72158 * 263.65377 * 12 11 10 36 36 H 0.96999 * 119.99633 * 24.99146 * 15 13 12 37 37 H 0.96999 * 120.00163 * 180.02562 * 19 18 16 38 38 H 1.09003 * 110.36632 * 274.73841 * 24 10 8 39 39 H 1.09001 * 110.36915 * 37.06040 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1424 1.1754 0.0000 4 8 1.4500 2.3306 0.0005 5 7 3.4602 1.2174 0.0005 6 6 4.1906 0.1110 0.0005 7 6 3.5606 -1.1328 -0.0058 8 6 4.3459 -2.3742 -0.0120 9 8 4.4444 -3.0266 -1.0343 10 7 4.9570 -2.7906 1.1147 11 6 4.8349 -2.1620 2.4382 12 6 5.7275 -2.9627 3.4098 13 6 6.7425 -3.6528 2.4606 14 1 7.5582 -2.9773 2.2030 15 7 7.2557 -4.8912 3.0514 16 6 8.4781 -5.3766 2.6701 17 1 9.0636 -4.8465 1.9334 18 6 8.9645 -6.5497 3.2302 19 7 8.2511 -7.1954 4.1284 20 14 10.6317 -7.2122 2.7095 21 1 11.2285 -6.3077 1.6942 22 1 11.5263 -7.2866 3.8924 23 1 10.4658 -8.5687 2.1283 24 6 5.8538 -3.9554 1.2255 25 6 2.1392 -1.1698 -0.0005 26 8 1.5434 -2.2325 -0.0015 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 -0.3632 -0.5139 0.8900 30 1 1.9633 3.1501 0.0009 31 1 5.2689 0.1730 0.0014 32 1 5.1745 -1.1274 2.3900 33 1 3.7979 -2.1990 2.7718 34 1 6.2398 -2.2946 4.1021 35 1 5.1395 -3.7020 3.9534 36 1 6.7296 -5.3673 3.7128 37 1 8.5912 -8.0150 4.5201 38 1 5.2756 -4.8655 1.3853 39 1 6.4683 -4.0476 0.3300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969552244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:35 Heat of formation + Delta-G solvation = -68.120922 kcal Electronic energy + Delta-G solvation = -25255.378895 eV Core-core repulsion = 21391.620543 eV Total energy + Delta-G solvation = -3863.758352 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.10602 -40.97172 -39.85434 -38.62051 -37.96089 -36.36987 -35.92358 -33.43083 -31.99582 -31.00190 -29.20865 -28.98946 -26.52188 -25.49064 -24.91021 -23.92795 -21.80718 -21.11591 -20.30652 -19.94048 -19.39138 -18.69108 -18.03272 -17.50000 -17.29690 -16.94007 -16.58642 -16.28974 -15.83789 -15.49255 -15.41212 -15.03456 -14.80444 -14.57699 -14.36601 -14.29326 -13.80622 -13.71910 -13.51847 -13.16206 -13.08836 -12.90484 -12.54169 -12.37104 -12.06735 -12.03136 -11.77727 -11.61439 -11.47028 -11.42515 -11.07910 -10.96020 -9.74355 -9.58714 -9.07419 -7.96347 -5.26602 -0.63374 0.58030 0.61533 1.43178 1.48392 1.50110 1.59560 1.91255 2.31109 2.33161 2.56574 3.07791 3.23669 3.35120 3.54992 3.64677 3.95015 4.04583 4.09773 4.24716 4.28077 4.34765 4.35186 4.49034 4.53201 4.66774 4.68494 4.85118 4.86191 4.99683 5.14279 5.19741 5.25349 5.37025 5.53868 6.00983 6.25238 6.47046 6.50672 6.58230 7.04550 7.32269 8.03612 8.27277 9.26814 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.031881 B = 0.002869 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.054978 B = 9757.599130 C = 9840.189290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.510 5.510 3 C 0.618 3.382 4 O -0.433 6.433 5 N -0.580 5.580 6 C 0.270 3.730 7 C -0.370 4.370 8 C 0.601 3.399 9 O -0.588 6.588 10 N -0.605 5.605 11 C 0.113 3.887 12 C -0.129 4.129 13 C 0.170 3.830 14 H 0.079 0.921 15 N -0.724 5.724 16 C -0.245 4.245 17 H 0.080 0.920 18 C -0.072 4.072 19 N -0.967 5.967 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.298 1.298 24 C 0.090 3.910 25 C 0.552 3.448 26 O -0.562 6.562 27 H 0.137 0.863 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.467 0.533 31 H 0.204 0.796 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.376 0.624 37 H 0.252 0.748 38 H 0.037 0.963 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.393 28.479 -4.859 32.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.237 5.237 3 C 0.321 3.679 4 O -0.233 6.233 5 N -0.321 5.321 6 C 0.123 3.877 7 C -0.381 4.381 8 C 0.390 3.610 9 O -0.469 6.469 10 N -0.337 5.337 11 C -0.009 4.009 12 C -0.167 4.167 13 C 0.059 3.941 14 H 0.097 0.903 15 N -0.362 5.362 16 C -0.376 4.376 17 H 0.098 0.902 18 C -0.265 4.265 19 N -0.617 5.617 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.217 1.217 23 H -0.225 1.225 24 C -0.036 4.036 25 C 0.352 3.648 26 O -0.441 6.441 27 H 0.155 0.845 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.335 0.665 31 H 0.220 0.780 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.756 27.941 -5.516 32.548 hybrid contribution 0.474 -1.805 -0.131 1.870 sum -15.282 26.137 -5.647 30.799 Atomic orbital electron populations 1.22477 0.73878 1.07275 1.04986 1.46294 1.12195 1.04736 1.60440 1.20371 0.84760 0.82088 0.80720 1.84168 1.38935 1.14492 1.85738 1.68589 1.00858 1.30163 1.32460 1.23142 1.01370 0.83658 0.79516 1.21051 0.92700 0.95848 1.28543 1.17355 0.77792 0.84191 0.81687 1.90761 1.63492 1.58426 1.34213 1.48507 1.46373 1.29699 1.09130 1.22136 1.00181 0.98173 0.80412 1.22875 0.96760 0.99714 0.97398 1.21533 0.93872 0.88091 0.90573 0.90267 1.42483 1.19580 1.25772 1.48372 1.19696 0.94972 1.04742 1.18214 0.90248 1.25566 1.02386 0.98640 0.99878 1.69818 1.39732 1.19313 1.32884 0.85098 0.79688 0.77703 0.77412 1.18897 1.21700 1.22539 1.23120 0.91742 0.87506 1.01236 1.16760 0.87552 0.82441 0.77999 1.90949 1.71069 1.28925 1.53191 0.84488 0.89985 0.89521 0.66514 0.77985 0.87882 0.91468 0.87325 0.91495 0.79104 0.93953 0.94425 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 10.10 127.77 1.29 1.86 16 2 N -0.51 -8.56 2.99 -789.42 -2.36 -10.92 16 3 C 0.62 6.30 8.60 179.67 1.55 7.85 16 4 O -0.43 -0.13 11.91 -79.42 -0.95 -1.08 16 5 N -0.58 -6.97 10.31 -311.74 -3.21 -10.18 16 6 C 0.27 4.65 10.88 84.87 0.92 5.57 16 7 C -0.37 -10.14 4.86 -19.75 -0.10 -10.24 16 8 C 0.60 22.33 6.90 86.51 0.60 22.93 16 9 O -0.59 -27.78 17.40 -4.26 -0.07 -27.86 16 10 N -0.60 -20.83 3.32 -815.79 -2.71 -23.54 16 11 C 0.11 2.86 6.47 86.73 0.56 3.42 16 12 C -0.13 -3.72 6.59 31.78 0.21 -3.52 16 13 C 0.17 6.53 3.73 46.46 0.17 6.71 16 14 H 0.08 2.91 8.09 -2.39 -0.02 2.89 16 15 N -0.72 -35.94 5.24 -316.03 -1.66 -37.59 16 16 C -0.24 -13.44 9.96 84.03 0.84 -12.60 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 19 N -0.97 -59.15 13.06 21.65 0.28 -58.86 16 20 Si 0.97 46.32 29.55 68.60 2.03 48.34 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 24 C 0.09 3.69 6.59 86.93 0.57 4.26 16 25 C 0.55 15.53 7.48 85.19 0.64 16.17 16 26 O -0.56 -21.25 16.70 -4.78 -0.08 -21.33 16 27 H 0.14 0.41 6.77 -2.39 -0.02 0.39 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.47 -4.44 9.08 -74.06 -0.67 -5.12 16 31 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.10 1.82 7.99 -2.39 -0.02 1.80 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.07 2.09 8.01 -2.39 -0.02 2.07 16 36 H 0.38 20.07 7.77 -92.71 -0.72 19.35 16 37 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 2.30 8.09 -2.39 -0.02 2.28 16 Total: -1.00 -88.48 340.16 -1.30 -89.78 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -0.28 Total: 14.50 kcal Atomic # 6 Polarization: 31.03 SS G_CDS: 7.72 Total: 38.74 kcal Atomic # 7 Polarization: -131.44 SS G_CDS: -9.66 Total: -141.10 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -1.10 Total: -50.26 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -88.48 -1.30 -89.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969552244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.658 kcal (2) G-P(sol) polarization free energy of solvation -88.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds