Wall clock time and date at job start Fri Apr 10 2020 17:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35247 * 126.69110 * 2 1 4 4 C 1.42050 * 103.95308 * 180.12724 * 3 2 1 5 5 N 1.39363 * 126.89380 * 179.84915 * 4 3 2 6 6 C 1.34766 * 120.00205 * 359.71664 * 5 4 3 7 7 O 1.21360 * 120.00514 * 359.97438 * 6 5 4 8 8 C 1.49382 * 120.00181 * 180.02562 * 6 5 4 9 9 O 1.21353 * 119.99624 * 359.97438 * 8 6 5 10 10 N 1.34775 * 120.00054 * 180.02562 * 8 6 5 11 11 C 1.47018 * 125.64993 * 359.97124 * 10 8 6 12 12 C 1.54325 * 107.40412 * 178.90064 * 11 10 8 13 13 C 1.55405 * 102.82616 * 337.97548 * 12 11 10 14 14 H 1.09004 * 110.92671 * 277.25231 * 13 12 11 15 15 N 1.46505 * 111.03913 * 153.47072 * 13 12 11 16 16 C 1.36935 * 120.00217 * 161.23025 * 15 13 12 17 17 H 1.08006 * 119.99642 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00007 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99572 * 179.97438 * 18 16 15 20 20 Si 1.86791 * 120.00139 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47224 * 90.00046 * 20 18 16 22 22 H 1.48503 * 109.47388 * 210.00158 * 20 18 16 23 23 H 1.48501 * 109.47319 * 330.00053 * 20 18 16 24 24 C 1.47426 * 125.64489 * 180.02562 * 10 8 6 25 25 N 1.30749 * 106.20530 * 359.59287 * 4 3 2 26 26 O 1.20916 * 111.46607 * 0.25951 * 25 4 3 27 27 H 1.09002 * 109.47068 * 180.30605 * 1 2 3 28 28 H 1.09004 * 109.47147 * 300.30402 * 1 2 3 29 29 H 1.08999 * 109.47611 * 60.30103 * 1 2 3 30 30 H 1.07995 * 128.01817 * 359.97438 * 3 2 1 31 31 H 0.97005 * 119.99522 * 179.71112 * 5 4 3 32 32 H 1.09002 * 109.88241 * 298.39592 * 11 10 8 33 33 H 1.09000 * 109.88049 * 59.40721 * 11 10 8 34 34 H 1.09000 * 110.72188 * 96.24097 * 12 11 10 35 35 H 1.09002 * 110.72265 * 219.52294 * 12 11 10 36 36 H 0.96998 * 119.99743 * 341.23259 * 15 13 12 37 37 H 0.97003 * 119.99397 * 180.02562 * 19 18 16 38 38 H 1.08999 * 110.36956 * 322.93474 * 24 10 8 39 39 H 1.09003 * 110.36599 * 85.25378 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6252 0.5355 -0.0031 5 7 4.8276 1.2400 -0.0072 6 6 4.8190 2.5876 -0.0144 7 8 3.7641 3.1878 -0.0178 8 6 6.1078 3.3428 -0.0195 9 8 7.1626 2.7428 -0.0165 10 7 6.0992 4.6905 -0.0262 11 6 4.8990 5.5397 -0.0298 12 6 5.3726 7.0083 -0.0091 13 6 6.8093 6.8993 0.5733 14 1 6.7854 6.8508 1.6620 15 7 7.6471 8.0118 0.1183 16 6 8.7964 8.3243 0.7940 17 1 9.0850 7.7510 1.6626 18 6 9.5898 9.3787 0.3631 19 7 10.6943 9.6794 1.0130 20 14 9.0902 10.3706 -1.1387 21 1 8.2370 11.5108 -0.7175 22 1 10.3058 10.8866 -1.8180 23 1 8.3307 9.5033 -2.0746 24 6 7.2917 5.5573 -0.0322 25 7 3.4765 -0.7635 0.0044 26 8 2.3081 -1.0751 0.0062 27 1 -0.3633 -1.0277 0.0055 28 1 -0.3633 0.5186 0.8873 29 1 -0.3634 0.5091 -0.8926 30 1 2.0303 2.1262 -0.0004 31 1 5.6707 0.7603 -0.0048 32 1 4.3144 5.3514 -0.9303 33 1 4.2955 5.3323 0.8539 34 1 5.3963 7.4202 -1.0180 35 1 4.7357 7.6099 0.6394 36 1 7.3876 8.5269 -0.6616 37 1 11.2485 10.4164 0.7121 38 1 8.0788 5.1239 0.5848 39 1 7.6468 5.7069 -1.0518 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019766377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:18 Heat of formation + Delta-G solvation = 7.034116 kcal Electronic energy + Delta-G solvation = -24699.154145 eV Core-core repulsion = 20838.654760 eV Total energy + Delta-G solvation = -3860.499385 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.02761 -42.19169 -40.31964 -38.93976 -37.08477 -36.02415 -34.59890 -33.61830 -33.17509 -31.55822 -29.70019 -28.69598 -27.24169 -25.48079 -24.40940 -23.59820 -22.15991 -21.91739 -21.06625 -19.87285 -18.85461 -18.77590 -18.68188 -18.01216 -17.74881 -17.41335 -16.84918 -16.26228 -16.05825 -15.54748 -15.29701 -14.85271 -14.76092 -14.45499 -14.38349 -14.08535 -14.03740 -13.95747 -13.53973 -13.36322 -13.04929 -12.98415 -12.85260 -12.61509 -12.29653 -12.23544 -12.09955 -11.84343 -11.61080 -11.08197 -10.92332 -10.46137 -10.13718 -9.93208 -9.40267 -8.03482 -5.40497 -0.19973 0.49256 0.67835 1.15947 1.40393 1.44611 1.51435 1.93389 1.95871 2.20561 2.48768 2.87521 3.24719 3.26839 3.42382 3.72620 3.74636 3.87767 4.00537 4.19802 4.30457 4.32212 4.40954 4.57396 4.67552 4.78531 4.82696 4.85859 4.92011 4.94972 5.07658 5.14880 5.28427 5.29464 5.55636 5.75151 6.05305 6.19648 6.26608 6.58727 7.04965 7.18243 7.77105 7.97244 9.17384 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.002558 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.652776 B =10943.541039 C =11426.803135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.002 4.002 3 C -0.246 4.246 4 C 0.227 3.773 5 N -0.605 5.605 6 C 0.533 3.467 7 O -0.486 6.486 8 C 0.520 3.480 9 O -0.549 6.549 10 N -0.577 5.577 11 C 0.111 3.889 12 C -0.131 4.131 13 C 0.168 3.832 14 H 0.067 0.933 15 N -0.735 5.735 16 C -0.239 4.239 17 H 0.056 0.944 18 C -0.062 4.062 19 N -0.982 5.982 20 Si 0.958 3.042 21 H -0.274 1.274 22 H -0.301 1.301 23 H -0.246 1.246 24 C 0.089 3.911 25 N -0.407 5.407 26 O 0.098 5.902 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.195 0.805 31 H 0.433 0.567 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.372 0.628 37 H 0.258 0.742 38 H 0.057 0.943 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.018 -17.160 -4.555 31.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 C -0.269 4.269 4 C -0.021 4.021 5 N -0.257 5.257 6 C 0.314 3.686 7 O -0.357 6.357 8 C 0.302 3.698 9 O -0.428 6.428 10 N -0.309 5.309 11 C -0.011 4.011 12 C -0.169 4.169 13 C 0.058 3.942 14 H 0.085 0.915 15 N -0.378 5.378 16 C -0.370 4.370 17 H 0.075 0.925 18 C -0.254 4.254 19 N -0.631 5.631 20 Si 0.784 3.216 21 H -0.200 1.200 22 H -0.228 1.228 23 H -0.170 1.170 24 C -0.036 4.036 25 N -0.122 5.122 26 O 0.036 5.964 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.212 0.788 31 H 0.272 0.728 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.207 0.793 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.217 -18.077 -4.385 31.335 hybrid contribution 1.156 1.139 -0.601 1.731 sum -24.061 -16.938 -4.986 29.844 Atomic orbital electron populations 1.20657 0.80067 1.06378 1.05981 1.25225 0.98132 0.84345 0.98843 1.22820 0.88556 1.03011 1.12521 1.20721 0.88508 0.89303 1.03521 1.41980 1.07601 1.05624 1.70514 1.19851 0.89769 0.81768 0.77182 1.90686 1.31762 1.67863 1.45379 1.19422 0.88608 0.82299 0.79445 1.90798 1.33033 1.68126 1.50795 1.48342 1.11077 1.03706 1.67823 1.22376 0.85687 0.88528 1.04473 1.23029 0.95016 0.95504 1.03353 1.21492 0.90396 0.84837 0.97499 0.91518 1.42553 1.25450 1.35834 1.33925 1.18998 0.98448 1.11498 1.08031 0.92548 1.25571 0.96880 1.00439 1.02491 1.69900 1.16645 1.32658 1.43943 0.85380 0.77195 0.79204 0.79783 1.19993 1.22794 1.17044 1.23250 0.87049 0.91618 1.01692 1.74088 0.98692 1.13239 1.26213 1.84788 1.10117 1.33156 1.68292 0.88139 0.87213 0.87184 0.78794 0.72769 0.88843 0.89001 0.89380 0.87276 0.79329 0.93278 0.92482 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 71.24 0.74 0.49 16 2 C 0.00 -0.02 7.48 25.00 0.19 0.16 16 3 C -0.25 -4.54 9.79 22.53 0.22 -4.32 16 4 C 0.23 5.21 8.17 134.15 1.10 6.31 16 5 N -0.60 -13.94 5.41 -310.82 -1.68 -15.62 16 6 C 0.53 13.00 7.82 87.25 0.68 13.68 16 7 O -0.49 -11.34 11.39 -3.28 -0.04 -11.38 16 8 C 0.52 15.07 7.91 87.25 0.69 15.76 16 9 O -0.55 -18.99 16.73 -3.26 -0.05 -19.05 16 10 N -0.58 -16.24 3.33 -813.42 -2.71 -18.95 16 11 C 0.11 2.39 5.48 86.73 0.48 2.87 16 12 C -0.13 -3.01 6.60 31.87 0.21 -2.80 16 13 C 0.17 5.67 3.69 46.48 0.17 5.84 16 14 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 15 N -0.74 -31.28 5.08 -315.92 -1.61 -32.88 16 16 C -0.24 -12.98 10.47 84.03 0.88 -12.11 16 17 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 18 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 19 N -0.98 -61.79 13.97 21.65 0.30 -61.48 16 20 Si 0.96 43.26 27.73 68.60 1.90 45.16 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.25 -9.76 6.52 99.48 0.65 -9.11 16 24 C 0.09 3.02 6.60 86.86 0.57 3.59 16 25 N -0.41 -9.56 12.10 -56.34 -0.68 -10.24 16 26 O 0.10 1.86 11.19 71.24 0.80 2.65 16 27 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.20 3.41 6.22 -2.91 -0.02 3.39 16 31 H 0.43 9.47 8.29 -92.70 -0.77 8.70 16 32 H 0.09 1.76 7.69 -2.39 -0.02 1.75 16 33 H 0.09 1.80 7.57 -2.39 -0.02 1.78 16 34 H 0.09 1.89 8.00 -2.39 -0.02 1.87 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.37 14.81 5.58 -92.71 -0.52 14.30 16 37 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -72.29 334.22 2.41 -69.89 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.23 Total: 25.48 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 6.40 Total: 26.41 kcal Atomic # 7 Polarization: -132.80 SS G_CDS: -6.37 Total: -139.17 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: 0.71 Total: -27.77 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.90 Total: 45.16 kcal Total: -72.29 2.41 -69.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019766377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.920 kcal (2) G-P(sol) polarization free energy of solvation -72.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds