Wall clock time and date at job start Fri Apr 10 2020 17:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48491 * 109.47116 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.46727 * 29.99948 * 3 2 1 6 6 H 1.48499 * 109.47145 * 149.99401 * 3 2 1 7 7 C 1.38816 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00359 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99699 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99987 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.84816 * 336.19512 * 10 9 7 12 12 C 1.53781 * 113.61692 * 107.50091 * 10 9 7 13 13 C 1.53774 * 87.08115 * 139.98106 * 12 10 9 14 14 H 1.09000 * 113.69044 * 220.00317 * 13 12 10 15 15 N 1.46504 * 113.61360 * 89.11786 * 13 12 10 16 16 C 1.34779 * 119.99992 * 107.49869 * 15 13 12 17 17 O 1.21288 * 119.99926 * 0.02562 * 16 15 13 18 18 C 1.50701 * 120.00193 * 179.97438 * 16 15 13 19 19 N 1.46495 * 109.47327 * 179.97438 * 18 16 15 20 20 C 1.36160 * 119.86021 * 270.23988 * 19 18 16 21 21 C 1.35536 * 119.26299 * 180.27783 * 20 19 18 22 22 C 1.40743 * 118.99516 * 359.46724 * 21 20 19 23 23 O 1.35161 * 120.16129 * 180.25788 * 22 21 20 24 24 N 1.32424 * 119.67367 * 0.28143 * 22 21 20 25 25 C 1.33271 * 120.72631 * 359.97438 * 24 22 21 26 26 O 1.21974 * 119.47317 * 179.97438 * 25 24 22 27 27 C 1.53776 * 87.08504 * 334.56743 * 13 12 10 28 28 H 0.96997 * 120.00702 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00130 * 0.02562 * 9 7 2 30 30 H 1.09002 * 113.61266 * 25.43037 * 12 10 9 31 31 H 1.09001 * 113.61640 * 254.53663 * 12 10 9 32 32 H 0.96995 * 119.99800 * 287.50439 * 15 13 12 33 33 H 1.09002 * 109.46783 * 60.00052 * 18 16 15 34 34 H 1.08998 * 109.47185 * 300.00643 * 18 16 15 35 35 H 1.08003 * 120.36823 * 0.04338 * 20 19 18 36 36 H 1.08002 * 120.50499 * 179.75058 * 21 20 19 37 37 H 0.96696 * 113.99852 * 180.02562 * 23 22 21 38 38 H 1.09003 * 113.61280 * 139.97624 * 27 13 12 39 39 H 1.08996 * 113.61652 * 270.80432 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5277 -3.2970 0.4061 12 6 4.7877 -2.7922 -1.3425 13 6 5.9848 -3.3091 -0.5274 14 1 6.9522 -3.0428 -0.9531 15 7 5.8881 -4.7287 -0.1787 16 6 6.6788 -5.6295 -0.7951 17 8 7.4706 -5.2647 -1.6383 18 6 6.5798 -7.0897 -0.4360 19 7 7.5352 -7.8561 -1.2396 20 6 7.1570 -8.3562 -2.4483 21 6 8.0490 -9.0683 -3.1791 22 6 9.3474 -9.2613 -2.6715 23 8 10.2574 -9.9632 -3.3830 24 7 9.6731 -8.7523 -1.4932 25 6 8.7847 -8.0583 -0.7822 26 8 9.1090 -7.6000 0.3006 27 6 5.5259 -2.3659 0.5971 28 1 -0.4851 0.8400 -0.0004 29 1 3.8646 -0.3621 0.0014 30 1 5.0146 -1.9088 -1.9394 31 1 4.2788 -3.5698 -1.9122 32 1 5.2550 -5.0204 0.4959 33 1 5.5692 -7.4455 -0.6366 34 1 6.8074 -7.2199 0.6220 35 1 6.1561 -8.1904 -2.8187 36 1 7.7691 -9.4775 -4.1386 37 1 11.1190 -10.0413 -2.9512 38 1 5.6130 -2.7995 1.5934 39 1 5.9558 -1.3664 0.5313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020359086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:22 Heat of formation + Delta-G solvation = -16.840253 kcal Electronic energy + Delta-G solvation = -24508.971776 eV Core-core repulsion = 20647.437121 eV Total energy + Delta-G solvation = -3861.534655 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.18402 -40.17026 -39.07551 -38.13237 -36.98166 -34.88010 -34.29109 -32.79548 -31.66721 -30.59834 -28.59564 -25.33946 -25.28627 -24.68796 -23.68742 -22.06000 -21.22285 -20.12505 -19.34747 -18.52118 -17.98675 -17.77223 -17.44307 -16.29675 -16.08915 -15.77166 -15.44359 -15.05981 -14.92864 -14.71618 -14.39961 -14.29411 -13.95904 -13.69351 -13.32904 -12.93887 -12.69467 -12.36425 -12.27861 -12.18155 -12.10133 -11.12519 -11.07480 -10.97453 -10.70345 -10.51430 -10.27528 -10.19343 -10.09086 -9.98781 -9.65127 -9.08498 -8.96518 -8.95459 -7.36411 -5.86385 -3.22677 0.27700 1.33997 1.88635 2.30458 2.78835 2.91516 3.31707 3.34717 3.40214 3.49769 3.84413 4.07369 4.29940 4.37707 4.51022 4.61428 4.73631 4.82636 4.94955 4.99013 5.03528 5.17505 5.32954 5.60581 5.65500 5.67347 5.84296 5.96296 6.03510 6.09074 6.27598 6.40276 6.44761 6.64623 6.83645 7.28624 7.44002 7.83408 7.88343 7.96050 8.32995 9.10229 9.83030 10.02233 11.31567 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.037966 B = 0.002372 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.325772 B =11800.082922 C =11982.404757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.251 4.251 8 H 0.091 0.909 9 N -0.736 5.736 10 C 0.173 3.827 11 H 0.083 0.917 12 C -0.174 4.174 13 C 0.116 3.884 14 H 0.097 0.903 15 N -0.699 5.699 16 C 0.502 3.498 17 O -0.531 6.531 18 C 0.074 3.926 19 N -0.511 5.511 20 C 0.214 3.786 21 C -0.286 4.286 22 C 0.459 3.541 23 O -0.448 6.448 24 N -0.614 5.614 25 C 0.662 3.338 26 O -0.530 6.530 27 C -0.163 4.163 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.404 0.596 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.184 0.816 36 H 0.166 0.834 37 H 0.417 0.583 38 H 0.069 0.931 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.768 -21.071 -5.272 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.108 0.892 9 N -0.376 5.376 10 C 0.061 3.939 11 H 0.101 0.899 12 C -0.216 4.216 13 C 0.011 3.989 14 H 0.115 0.885 15 N -0.350 5.350 16 C 0.286 3.714 17 O -0.407 6.407 18 C -0.052 4.052 19 N -0.227 5.227 20 C 0.078 3.922 21 C -0.313 4.313 22 C 0.258 3.742 23 O -0.243 6.243 24 N -0.371 5.371 25 C 0.363 3.637 26 O -0.404 6.404 27 C -0.202 4.202 28 H 0.071 0.929 29 H 0.197 0.803 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.239 0.761 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.201 0.799 36 H 0.183 0.817 37 H 0.274 0.726 38 H 0.088 0.912 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.607 -20.616 -5.065 26.348 hybrid contribution 0.005 1.226 0.140 1.234 sum 15.612 -19.390 -4.925 25.377 Atomic orbital electron populations 1.69694 1.05144 1.26003 1.56990 1.24706 0.95272 0.97347 1.01689 0.86550 0.79227 0.84879 0.77863 1.20994 1.21643 1.20262 1.19104 0.80609 0.94752 1.43655 0.89156 1.42753 1.04139 1.01971 1.88721 1.21611 0.89412 0.90130 0.92721 0.89941 1.24278 0.96390 1.00861 1.00120 1.21841 1.00062 0.78811 0.98211 0.88489 1.45578 1.40219 1.07271 1.41953 1.20563 0.80999 0.87782 0.82042 1.90760 1.36835 1.80497 1.32585 1.21856 0.94026 0.89776 0.99574 1.46022 1.14489 1.44685 1.17488 1.22361 1.00262 0.86660 0.82899 1.20605 0.91837 1.12957 1.05888 1.20436 0.87468 0.80835 0.85490 1.84988 1.26219 1.67123 1.45931 1.69648 1.34068 1.23665 1.09741 1.17273 0.78313 0.81146 0.86919 1.91015 1.76376 1.52409 1.20642 1.23891 0.99311 0.99381 0.97657 0.92943 0.80344 0.89575 0.91948 0.76106 0.85418 0.84726 0.79901 0.81657 0.72590 0.91233 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.51 27.74 -169.99 -4.71 16.79 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 7 C -0.25 -6.77 10.45 -15.06 -0.16 -6.93 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 N -0.74 -16.40 5.21 -52.64 -0.27 -16.68 16 10 C 0.17 2.95 4.36 -67.12 -0.29 2.66 16 11 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 12 C -0.17 -2.69 7.68 -25.92 -0.20 -2.88 16 13 C 0.12 1.56 4.32 -67.12 -0.29 1.27 16 14 H 0.10 1.43 7.46 -51.93 -0.39 1.05 16 15 N -0.70 -7.50 5.26 -53.02 -0.28 -7.78 16 16 C 0.50 5.82 7.90 -10.98 -0.09 5.74 16 17 O -0.53 -8.53 16.03 5.55 0.09 -8.44 16 18 C 0.07 0.57 5.82 -5.20 -0.03 0.54 16 19 N -0.51 -4.91 2.08 -123.16 -0.26 -5.17 16 20 C 0.21 1.30 10.40 -16.60 -0.17 1.12 16 21 C -0.29 -1.79 10.03 -39.60 -0.40 -2.19 16 22 C 0.46 3.98 7.91 -16.35 -0.13 3.85 16 23 O -0.45 -2.71 13.55 -17.18 -0.23 -2.94 16 24 N -0.61 -7.67 10.40 -16.72 -0.17 -7.84 16 25 C 0.66 9.21 8.34 -88.42 -0.74 8.47 16 26 O -0.53 -9.34 16.72 4.94 0.08 -9.25 16 27 C -0.16 -2.28 7.58 -25.92 -0.20 -2.48 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.36 8.03 5.79 -40.82 -0.24 7.79 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.40 3.22 8.70 -40.82 -0.36 2.86 16 33 H 0.13 0.36 8.03 -51.93 -0.42 -0.06 16 34 H 0.13 1.01 7.38 -51.93 -0.38 0.63 16 35 H 0.18 0.32 8.06 -52.48 -0.42 -0.10 16 36 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.42 1.13 8.98 45.56 0.41 1.54 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.29 8.12 -51.93 -0.42 0.87 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -40.19 341.45 -6.54 -46.73 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.92 Total: 7.87 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: -2.78 Total: 9.25 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -0.21 Total: -65.14 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -40.19 -6.54 -46.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020359086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.888 kcal (2) G-P(sol) polarization free energy of solvation -40.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds