Wall clock time and date at job start Fri Apr 10 2020 17:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48491 * 109.47116 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.46727 * 29.99948 * 3 2 1 6 6 H 1.48499 * 109.47145 * 149.99401 * 3 2 1 7 7 C 1.38816 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00359 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99699 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99987 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.84816 * 336.19512 * 10 9 7 12 12 C 1.53781 * 113.61692 * 107.50091 * 10 9 7 13 13 C 1.53774 * 87.08115 * 139.98106 * 12 10 9 14 14 H 1.09000 * 113.69044 * 220.00317 * 13 12 10 15 15 N 1.46504 * 113.61360 * 89.11786 * 13 12 10 16 16 C 1.34779 * 119.99992 * 107.49869 * 15 13 12 17 17 O 1.21288 * 119.99926 * 0.02562 * 16 15 13 18 18 C 1.50701 * 120.00193 * 179.97438 * 16 15 13 19 19 N 1.46495 * 109.47327 * 179.97438 * 18 16 15 20 20 C 1.36160 * 119.86021 * 270.23988 * 19 18 16 21 21 C 1.35536 * 119.26299 * 180.27783 * 20 19 18 22 22 C 1.40743 * 118.99516 * 359.46724 * 21 20 19 23 23 O 1.35161 * 120.16129 * 180.25788 * 22 21 20 24 24 N 1.32424 * 119.67367 * 0.28143 * 22 21 20 25 25 C 1.33271 * 120.72631 * 359.97438 * 24 22 21 26 26 O 1.21974 * 119.47317 * 179.97438 * 25 24 22 27 27 C 1.53776 * 87.08504 * 334.56743 * 13 12 10 28 28 H 0.96997 * 120.00702 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00130 * 0.02562 * 9 7 2 30 30 H 1.09002 * 113.61266 * 25.43037 * 12 10 9 31 31 H 1.09001 * 113.61640 * 254.53663 * 12 10 9 32 32 H 0.96995 * 119.99800 * 287.50439 * 15 13 12 33 33 H 1.09002 * 109.46783 * 60.00052 * 18 16 15 34 34 H 1.08998 * 109.47185 * 300.00643 * 18 16 15 35 35 H 1.08003 * 120.36823 * 0.04338 * 20 19 18 36 36 H 1.08002 * 120.50499 * 179.75058 * 21 20 19 37 37 H 0.96696 * 113.99852 * 180.02562 * 23 22 21 38 38 H 1.09003 * 113.61280 * 139.97624 * 27 13 12 39 39 H 1.08996 * 113.61652 * 270.80432 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5277 -3.2970 0.4061 12 6 4.7877 -2.7922 -1.3425 13 6 5.9848 -3.3091 -0.5274 14 1 6.9522 -3.0428 -0.9531 15 7 5.8881 -4.7287 -0.1787 16 6 6.6788 -5.6295 -0.7951 17 8 7.4706 -5.2647 -1.6383 18 6 6.5798 -7.0897 -0.4360 19 7 7.5352 -7.8561 -1.2396 20 6 7.1570 -8.3562 -2.4483 21 6 8.0490 -9.0683 -3.1791 22 6 9.3474 -9.2613 -2.6715 23 8 10.2574 -9.9632 -3.3830 24 7 9.6731 -8.7523 -1.4932 25 6 8.7847 -8.0583 -0.7822 26 8 9.1090 -7.6000 0.3006 27 6 5.5259 -2.3659 0.5971 28 1 -0.4851 0.8400 -0.0004 29 1 3.8646 -0.3621 0.0014 30 1 5.0146 -1.9088 -1.9394 31 1 4.2788 -3.5698 -1.9122 32 1 5.2550 -5.0204 0.4959 33 1 5.5692 -7.4455 -0.6366 34 1 6.8074 -7.2199 0.6220 35 1 6.1561 -8.1904 -2.8187 36 1 7.7691 -9.4775 -4.1386 37 1 11.1190 -10.0413 -2.9512 38 1 5.6130 -2.7995 1.5934 39 1 5.9558 -1.3664 0.5313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020359086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:22 Heat of formation + Delta-G solvation = -53.807163 kcal Electronic energy + Delta-G solvation = -24510.574782 eV Core-core repulsion = 20647.437121 eV Total energy + Delta-G solvation = -3863.137661 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.90962 -41.17563 -39.82174 -39.22876 -37.81342 -35.88728 -35.57174 -34.22066 -32.55552 -32.21282 -29.35860 -26.57765 -26.38327 -25.77801 -24.56078 -23.59011 -22.16289 -20.77121 -20.69067 -19.49017 -19.12530 -18.77890 -18.35903 -17.28691 -16.89871 -16.82962 -16.49270 -16.32364 -16.05056 -15.61497 -15.42564 -15.05583 -14.83014 -14.73590 -14.37319 -14.29216 -14.08808 -13.80111 -13.38677 -13.23601 -13.06453 -12.89144 -12.58596 -12.06750 -12.03313 -11.86952 -11.81843 -11.46372 -11.25260 -10.99148 -10.97070 -10.88544 -10.10622 -9.68241 -9.27125 -8.01575 -5.34234 -0.31362 0.67433 1.22703 1.39459 1.41492 1.43542 1.48755 2.07487 2.27083 2.49151 2.71351 3.28402 3.28858 3.53721 3.62146 3.69418 3.71966 3.77224 3.86277 4.12288 4.21153 4.24856 4.27185 4.44899 4.58666 4.67914 4.88010 4.89714 5.11277 5.15011 5.19189 5.21855 5.33126 5.62025 5.78974 6.15863 6.23666 6.42957 6.66220 7.03231 7.08904 7.11421 7.86538 8.03668 9.19541 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.037966 B = 0.002372 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.325772 B =11800.082922 C =11982.404757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.950 3.050 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.251 1.251 7 C -0.229 4.229 8 H 0.064 0.936 9 N -0.743 5.743 10 C 0.157 3.843 11 H 0.088 0.912 12 C -0.168 4.168 13 C 0.132 3.868 14 H 0.085 0.915 15 N -0.690 5.690 16 C 0.501 3.499 17 O -0.579 6.579 18 C 0.078 3.922 19 N -0.513 5.513 20 C 0.216 3.784 21 C -0.286 4.286 22 C 0.456 3.544 23 O -0.441 6.441 24 N -0.658 5.658 25 C 0.650 3.350 26 O -0.591 6.591 27 C -0.148 4.148 28 H 0.257 0.743 29 H 0.365 0.635 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.420 0.580 33 H 0.187 0.813 34 H 0.135 0.865 35 H 0.235 0.765 36 H 0.200 0.800 37 H 0.430 0.570 38 H 0.088 0.912 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.219 -22.270 -6.127 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.257 4.257 3 Si 0.778 3.222 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.175 1.175 7 C -0.360 4.360 8 H 0.082 0.918 9 N -0.384 5.384 10 C 0.048 3.952 11 H 0.106 0.894 12 C -0.210 4.210 13 C 0.025 3.975 14 H 0.104 0.896 15 N -0.342 5.342 16 C 0.287 3.713 17 O -0.459 6.459 18 C -0.047 4.047 19 N -0.228 5.228 20 C 0.082 3.918 21 C -0.311 4.311 22 C 0.257 3.743 23 O -0.237 6.237 24 N -0.417 5.417 25 C 0.352 3.648 26 O -0.470 6.470 27 C -0.187 4.187 28 H 0.065 0.935 29 H 0.199 0.801 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.258 0.742 33 H 0.205 0.795 34 H 0.153 0.847 35 H 0.251 0.749 36 H 0.217 0.783 37 H 0.289 0.711 38 H 0.106 0.894 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.097 -21.903 -5.959 27.827 hybrid contribution -0.100 1.415 0.290 1.448 sum 15.997 -20.488 -5.669 26.604 Atomic orbital electron populations 1.69865 1.07055 1.26561 1.59858 1.25486 0.96074 1.01152 1.02973 0.85475 0.78767 0.80048 0.77889 1.20850 1.22584 1.17524 1.19119 0.82683 0.93523 1.40717 0.91806 1.42800 1.02538 1.04018 1.89039 1.21977 0.90498 0.88307 0.94463 0.89364 1.24119 0.96971 1.00724 0.99152 1.21511 0.98527 0.80293 0.97164 0.89645 1.45467 1.40484 1.06116 1.42102 1.21244 0.79772 0.89327 0.80933 1.90745 1.38713 1.81542 1.34872 1.22108 0.96346 0.86841 0.99434 1.45936 1.13512 1.44514 1.18800 1.23266 1.02285 0.85097 0.81121 1.21091 0.90574 1.12394 1.07009 1.20841 0.88814 0.80062 0.84580 1.84988 1.26872 1.66301 1.45544 1.69486 1.35119 1.25426 1.11684 1.17465 0.79631 0.81141 0.86579 1.90947 1.77866 1.55113 1.23052 1.23748 0.96394 0.99879 0.98721 0.93459 0.80127 0.90578 0.91691 0.74216 0.79550 0.84677 0.74870 0.78295 0.71104 0.89367 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.32 13.97 21.65 0.30 -61.02 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.95 44.27 27.74 68.60 1.90 46.18 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 7 C -0.23 -12.32 10.45 84.03 0.88 -11.44 16 8 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 9 N -0.74 -32.00 5.21 -320.44 -1.67 -33.67 16 10 C 0.16 5.04 4.36 45.52 0.20 5.24 16 11 H 0.09 2.74 8.10 -2.39 -0.02 2.72 16 12 C -0.17 -4.86 7.68 31.12 0.24 -4.62 16 13 C 0.13 3.25 4.32 45.51 0.20 3.44 16 14 H 0.09 2.41 7.46 -2.39 -0.02 2.39 16 15 N -0.69 -12.98 5.26 -440.04 -2.32 -15.30 16 16 C 0.50 10.51 7.90 87.66 0.69 11.20 16 17 O -0.58 -17.96 16.03 -3.05 -0.05 -18.01 16 18 C 0.08 0.96 5.82 85.63 0.50 1.46 16 19 N -0.51 -8.79 2.08 -661.78 -1.38 -10.16 16 20 C 0.22 1.81 10.40 83.40 0.87 2.68 16 21 C -0.29 -2.66 10.03 22.26 0.22 -2.43 16 22 C 0.46 7.30 7.91 85.22 0.67 7.97 16 23 O -0.44 -4.69 13.55 -84.40 -1.14 -5.83 16 24 N -0.66 -16.55 10.40 -438.80 -4.56 -21.11 16 25 C 0.65 18.14 8.34 179.58 1.50 19.64 16 26 O -0.59 -21.60 16.72 -5.23 -0.09 -21.69 16 27 C -0.15 -3.77 7.58 31.12 0.24 -3.53 16 28 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.37 15.34 5.79 -92.71 -0.54 14.81 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.42 5.29 8.70 -92.71 -0.81 4.49 16 33 H 0.19 0.02 8.03 -2.39 -0.02 0.00 16 34 H 0.14 1.77 7.38 -2.39 -0.02 1.75 16 35 H 0.24 -0.59 8.06 -2.91 -0.02 -0.61 16 36 H 0.20 0.44 8.06 -2.91 -0.02 0.42 16 37 H 0.43 2.03 8.98 -74.06 -0.66 1.37 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 2.37 8.12 -2.39 -0.02 2.35 16 Total: -1.00 -92.58 341.45 -3.27 -95.85 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.94 Total: 18.42 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 6.67 Total: 26.35 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -9.62 Total: -141.26 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -1.28 Total: -45.53 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.18 kcal Total: -92.58 -3.27 -95.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020359086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.042 kcal (2) G-P(sol) polarization free energy of solvation -92.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds