Wall clock time and date at job start Fri Apr 10 2020 17:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37855 * 120.05932 * 2 1 4 4 C 1.38631 * 120.11694 * 179.70143 * 3 2 1 5 5 F 1.35103 * 119.87948 * 180.02562 * 4 3 2 6 6 C 1.38673 * 120.24345 * 0.04919 * 4 3 2 7 7 C 1.37815 * 120.11654 * 359.94926 * 6 4 3 8 8 C 1.39629 * 120.05763 * 179.72665 * 2 1 3 9 9 C 1.47725 * 120.12278 * 0.25353 * 8 2 1 10 10 O 1.21575 * 119.99549 * 6.27843 * 9 8 2 11 11 N 1.34769 * 120.00080 * 186.28247 * 9 8 2 12 12 C 1.46501 * 120.00030 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.64159 * 36.68617 * 12 11 9 14 14 C 1.54327 * 110.71941 * 273.55002 * 12 11 9 15 15 N 1.47032 * 107.26676 * 219.44141 * 14 12 11 16 16 C 1.36935 * 125.64505 * 178.97196 * 15 14 12 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99982 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99727 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00119 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47205 * 60.00607 * 20 18 16 22 22 H 1.48506 * 109.47034 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47143 * 300.00249 * 20 18 16 24 24 C 1.47425 * 108.70552 * 358.93959 * 15 14 12 25 25 C 1.54912 * 104.82944 * 24.12641 * 24 15 14 26 26 H 1.08996 * 111.00242 * 81.06779 * 25 24 15 27 27 O 1.42899 * 111.00537 * 204.91643 * 25 24 15 28 28 H 1.09007 * 109.47263 * 96.60749 * 1 2 3 29 29 H 1.09003 * 109.47070 * 216.59972 * 1 2 3 30 30 H 1.08996 * 109.47311 * 336.60507 * 1 2 3 31 31 H 1.08004 * 119.94191 * 359.72810 * 3 2 1 32 32 H 1.07992 * 119.94616 * 179.97438 * 6 4 3 33 33 H 1.07995 * 120.06529 * 179.97438 * 7 6 4 34 34 H 0.96993 * 120.00281 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.88365 * 338.85563 * 14 12 11 36 36 H 1.08996 * 109.88642 * 100.02882 * 14 12 11 37 37 H 0.97005 * 119.99658 * 179.97438 * 19 18 16 38 38 H 1.08996 * 110.36623 * 142.96548 * 24 15 14 39 39 H 1.09002 * 110.36356 * 265.18171 * 24 15 14 40 40 H 0.96705 * 114.00280 * 292.20037 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1931 0.0000 4 6 3.5838 1.1945 0.0062 5 9 4.2557 2.3667 0.0067 6 6 4.2835 -0.0027 0.0115 7 6 3.6031 -1.2012 0.0116 8 6 2.2064 -1.2085 0.0058 9 6 1.4718 -2.4902 0.0062 10 8 0.2620 -2.4973 -0.1135 11 7 2.1427 -3.6514 0.1395 12 6 1.4142 -4.9224 0.1405 13 1 0.5779 -4.8865 -0.5577 14 6 0.9239 -5.2695 1.5620 15 7 1.1010 -6.7178 1.7432 16 6 0.8037 -7.4222 2.8793 17 1 0.4018 -6.9113 3.7417 18 6 1.0178 -8.7930 2.9220 19 7 1.5071 -9.4157 1.8706 20 14 0.6116 -9.7540 4.4714 21 1 -0.8333 -9.6070 4.7805 22 1 0.9298 -11.1893 4.2614 23 1 1.4160 -9.2298 5.6042 24 6 1.6508 -7.2862 0.4990 25 6 2.3655 -6.1008 -0.1965 26 1 3.3556 -5.9375 0.2290 27 8 2.4447 -6.3074 -1.6082 28 1 -0.3634 -0.1183 -1.0209 29 1 -0.3633 -0.8251 0.6127 30 1 -0.3634 0.9431 0.4080 31 1 1.6575 2.1285 -0.0044 32 1 5.3634 0.0040 0.0159 33 1 4.1488 -2.1332 0.0153 34 1 3.1079 -3.6456 0.2347 35 1 1.5154 -4.7285 2.3006 36 1 -0.1295 -5.0092 1.6648 37 1 1.6571 -10.3736 1.9005 38 1 2.3641 -8.0784 0.7266 39 1 0.8476 -7.6692 -0.1305 40 1 3.0280 -7.0340 -1.8673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078042389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:19 Heat of formation + Delta-G solvation = -70.232638 kcal Electronic energy + Delta-G solvation = -25077.705123 eV Core-core repulsion = 21193.935239 eV Total energy + Delta-G solvation = -3883.769884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.24516 -40.47754 -38.72166 -37.56899 -35.13557 -34.39347 -32.79740 -31.94767 -30.91144 -28.47638 -27.49272 -26.80448 -24.62853 -23.71384 -22.17155 -20.96347 -20.50334 -19.99164 -17.99430 -17.45348 -17.17115 -16.84499 -16.61049 -15.96160 -15.55246 -15.25360 -14.92553 -14.71045 -14.15817 -13.91038 -13.71336 -13.52245 -13.34886 -13.23237 -13.00441 -12.83773 -12.36859 -12.10899 -12.02077 -11.90433 -11.53321 -11.33542 -11.30476 -11.02563 -10.84291 -10.23881 -9.95906 -9.78287 -9.70055 -9.31298 -9.25638 -9.05662 -8.75175 -8.74624 -6.95586 -5.75271 -3.17792 0.46571 0.89894 2.68732 3.19535 3.36706 3.40974 3.42242 3.54675 3.84835 4.32731 4.36593 4.47528 4.56605 4.62835 4.78103 4.98947 5.20718 5.37373 5.38798 5.47837 5.52569 5.57939 5.62051 5.70846 5.74629 5.80819 5.82427 6.02695 6.05364 6.14991 6.28384 6.44256 6.54888 6.63727 6.86994 7.27564 7.48486 7.60216 7.69131 8.04923 8.21531 8.30700 9.10734 9.71203 10.33317 11.28955 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.003028 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.062611 B = 9245.487212 C = 9461.358755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.007 3.993 3 C -0.167 4.167 4 C 0.124 3.876 5 F -0.137 7.137 6 C -0.169 4.169 7 C -0.052 4.052 8 C -0.145 4.145 9 C 0.557 3.443 10 O -0.528 6.528 11 N -0.709 5.709 12 C 0.143 3.857 13 H 0.102 0.898 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.224 4.224 17 H 0.080 0.920 18 C -0.010 4.010 19 N -0.925 5.925 20 Si 0.918 3.082 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.130 3.870 25 C 0.067 3.933 26 H 0.062 0.938 27 O -0.566 6.566 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.396 0.604 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.254 0.746 38 H 0.113 0.887 39 H 0.026 0.974 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 17.588 -5.635 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.006 3.994 3 C -0.186 4.186 4 C 0.104 3.896 5 F -0.116 7.116 6 C -0.188 4.188 7 C -0.070 4.070 8 C -0.149 4.149 9 C 0.345 3.655 10 O -0.406 6.406 11 N -0.359 5.359 12 C 0.038 3.962 13 H 0.120 0.880 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.352 4.352 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.573 5.573 20 Si 0.748 3.252 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.004 3.996 25 C 0.007 3.993 26 H 0.079 0.921 27 O -0.371 6.371 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.232 0.768 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.131 0.869 39 H 0.044 0.956 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.203 17.885 -5.647 19.463 hybrid contribution 0.918 -0.709 0.829 1.426 sum 6.121 17.176 -4.818 18.860 Atomic orbital electron populations 1.21153 0.89081 1.03501 1.04240 1.19905 0.97348 0.90433 0.91745 1.21022 0.92103 0.99365 1.06130 1.17920 0.90191 0.81240 1.00200 1.91516 1.80505 1.45989 1.93542 1.21033 1.01123 0.90891 1.05751 1.21188 0.92909 0.98093 0.94851 1.19959 0.93534 0.93783 1.07606 1.18070 0.87200 0.83438 0.76825 1.90743 1.13503 1.86901 1.49466 1.45925 1.10634 1.05821 1.73560 1.22047 0.95200 0.80427 0.98506 0.88039 1.21632 0.98471 0.87204 0.92387 1.44281 1.75319 1.01079 1.12098 1.19064 1.35937 0.89911 0.90289 0.90231 1.24800 1.01434 0.96305 0.98001 1.69725 1.50666 1.08763 1.28167 0.86093 0.78191 0.78917 0.81951 1.21079 1.21509 1.21082 1.22550 0.97775 0.93263 0.86039 1.23634 0.97573 0.97082 0.81029 0.92053 1.86414 1.71369 1.56840 1.22429 0.90104 0.87891 0.92199 0.84122 0.84126 0.84456 0.76835 0.95182 0.94720 0.93524 0.86948 0.95585 0.77521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.73 36.01 0.31 -1.07 16 2 C 0.01 0.08 5.91 -104.24 -0.62 -0.54 16 3 C -0.17 -1.64 9.64 -39.58 -0.38 -2.02 16 4 C 0.12 1.22 7.31 -39.28 -0.29 0.94 16 5 F -0.14 -1.39 17.26 2.25 0.04 -1.35 16 6 C -0.17 -1.51 10.01 -39.58 -0.40 -1.91 16 7 C -0.05 -0.50 9.52 -39.20 -0.37 -0.87 16 8 C -0.15 -1.77 5.87 -104.96 -0.62 -2.39 16 9 C 0.56 8.39 7.69 -12.39 -0.10 8.30 16 10 O -0.53 -9.44 13.07 5.30 0.07 -9.37 16 11 N -0.71 -10.39 5.08 -53.01 -0.27 -10.66 16 12 C 0.14 2.61 2.97 -66.10 -0.20 2.41 16 13 H 0.10 2.06 7.69 -51.93 -0.40 1.66 16 14 C 0.13 2.77 6.99 -3.06 -0.02 2.74 16 15 N -0.60 -15.05 3.39 -170.07 -0.58 -15.63 16 16 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -26.00 10.09 55.49 0.56 -25.44 16 20 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.13 3.01 5.62 -2.53 -0.01 3.00 16 25 C 0.07 1.21 4.04 -24.58 -0.10 1.11 16 26 H 0.06 1.02 8.00 -51.93 -0.42 0.60 16 27 O -0.57 -9.32 13.47 -35.23 -0.47 -9.80 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.10 1.40 5.85 -51.93 -0.30 1.09 16 30 H 0.06 0.52 8.04 -51.93 -0.42 0.11 16 31 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.14 1.02 6.45 -52.49 -0.34 0.69 16 34 H 0.40 4.67 6.59 -40.82 -0.27 4.41 16 35 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.11 2.86 5.87 -51.93 -0.31 2.56 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.38 4.68 9.12 45.56 0.42 5.09 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -31.66 335.63 -7.76 -39.43 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.11 Total: 8.13 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -3.03 Total: 3.06 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.29 Total: -51.73 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.41 Total: -19.17 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.66 -7.76 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078042389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.806 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds