Wall clock time and date at job start Fri Apr 10 2020 17:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37855 * 120.05932 * 2 1 4 4 C 1.38631 * 120.11694 * 179.70143 * 3 2 1 5 5 F 1.35103 * 119.87948 * 180.02562 * 4 3 2 6 6 C 1.38673 * 120.24345 * 0.04919 * 4 3 2 7 7 C 1.37815 * 120.11654 * 359.94926 * 6 4 3 8 8 C 1.39629 * 120.05763 * 179.72665 * 2 1 3 9 9 C 1.47725 * 120.12278 * 0.25353 * 8 2 1 10 10 O 1.21575 * 119.99549 * 6.27843 * 9 8 2 11 11 N 1.34769 * 120.00080 * 186.28247 * 9 8 2 12 12 C 1.46501 * 120.00030 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.64159 * 36.68617 * 12 11 9 14 14 C 1.54327 * 110.71941 * 273.55002 * 12 11 9 15 15 N 1.47032 * 107.26676 * 219.44141 * 14 12 11 16 16 C 1.36935 * 125.64505 * 178.97196 * 15 14 12 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99982 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99727 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00119 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47205 * 60.00607 * 20 18 16 22 22 H 1.48506 * 109.47034 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47143 * 300.00249 * 20 18 16 24 24 C 1.47425 * 108.70552 * 358.93959 * 15 14 12 25 25 C 1.54912 * 104.82944 * 24.12641 * 24 15 14 26 26 H 1.08996 * 111.00242 * 81.06779 * 25 24 15 27 27 O 1.42899 * 111.00537 * 204.91643 * 25 24 15 28 28 H 1.09007 * 109.47263 * 96.60749 * 1 2 3 29 29 H 1.09003 * 109.47070 * 216.59972 * 1 2 3 30 30 H 1.08996 * 109.47311 * 336.60507 * 1 2 3 31 31 H 1.08004 * 119.94191 * 359.72810 * 3 2 1 32 32 H 1.07992 * 119.94616 * 179.97438 * 6 4 3 33 33 H 1.07995 * 120.06529 * 179.97438 * 7 6 4 34 34 H 0.96993 * 120.00281 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.88365 * 338.85563 * 14 12 11 36 36 H 1.08996 * 109.88642 * 100.02882 * 14 12 11 37 37 H 0.97005 * 119.99658 * 179.97438 * 19 18 16 38 38 H 1.08996 * 110.36623 * 142.96548 * 24 15 14 39 39 H 1.09002 * 110.36356 * 265.18171 * 24 15 14 40 40 H 0.96705 * 114.00280 * 292.20037 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1931 0.0000 4 6 3.5838 1.1945 0.0062 5 9 4.2557 2.3667 0.0067 6 6 4.2835 -0.0027 0.0115 7 6 3.6031 -1.2012 0.0116 8 6 2.2064 -1.2085 0.0058 9 6 1.4718 -2.4902 0.0062 10 8 0.2620 -2.4973 -0.1135 11 7 2.1427 -3.6514 0.1395 12 6 1.4142 -4.9224 0.1405 13 1 0.5779 -4.8865 -0.5577 14 6 0.9239 -5.2695 1.5620 15 7 1.1010 -6.7178 1.7432 16 6 0.8037 -7.4222 2.8793 17 1 0.4018 -6.9113 3.7417 18 6 1.0178 -8.7930 2.9220 19 7 1.5071 -9.4157 1.8706 20 14 0.6116 -9.7540 4.4714 21 1 -0.8333 -9.6070 4.7805 22 1 0.9298 -11.1893 4.2614 23 1 1.4160 -9.2298 5.6042 24 6 1.6508 -7.2862 0.4990 25 6 2.3655 -6.1008 -0.1965 26 1 3.3556 -5.9375 0.2290 27 8 2.4447 -6.3074 -1.6082 28 1 -0.3634 -0.1183 -1.0209 29 1 -0.3633 -0.8251 0.6127 30 1 -0.3634 0.9431 0.4080 31 1 1.6575 2.1285 -0.0044 32 1 5.3634 0.0040 0.0159 33 1 4.1488 -2.1332 0.0153 34 1 3.1079 -3.6456 0.2347 35 1 1.5154 -4.7285 2.3006 36 1 -0.1295 -5.0092 1.6648 37 1 1.6571 -10.3736 1.9005 38 1 2.3641 -8.0784 0.7266 39 1 0.8476 -7.6692 -0.1305 40 1 3.0280 -7.0340 -1.8673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078042389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:18 Heat of formation + Delta-G solvation = -92.818107 kcal Electronic energy + Delta-G solvation = -25078.684503 eV Core-core repulsion = 21193.935239 eV Total energy + Delta-G solvation = -3884.749264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.00963 -41.56787 -39.98523 -38.84624 -36.68530 -35.80005 -33.93206 -33.43455 -31.98693 -30.13007 -28.83449 -28.05819 -26.38803 -24.70876 -23.09974 -22.52700 -21.81763 -21.47521 -19.26596 -18.74687 -18.40690 -18.16113 -17.63982 -17.11858 -16.74204 -16.49318 -16.16159 -16.10039 -15.57957 -15.27501 -14.86675 -14.73011 -14.41026 -14.33213 -14.22141 -13.97648 -13.83038 -13.66197 -13.22160 -13.15511 -12.97594 -12.82591 -12.75135 -12.69617 -12.09871 -12.07877 -11.92126 -11.42753 -11.09505 -10.77585 -10.68272 -10.26644 -10.03006 -9.73040 -8.97243 -7.81961 -5.28186 -0.38776 0.15788 1.47950 1.50845 1.57113 1.68823 1.98400 2.47301 2.62481 3.06577 3.09721 3.29527 3.56315 3.59041 3.64620 3.76531 3.87831 4.05616 4.07711 4.17836 4.24662 4.42584 4.58843 4.61091 4.70126 4.77817 4.80116 4.84584 4.92383 5.02500 5.05749 5.20527 5.37940 5.40882 5.44156 5.51616 5.68202 5.75395 6.21409 6.47519 6.87174 7.04916 7.15583 7.69071 8.31071 9.19478 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.003028 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.062611 B = 9245.487212 C = 9461.358755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.005 4.005 3 C -0.165 4.165 4 C 0.121 3.879 5 F -0.137 7.137 6 C -0.162 4.162 7 C -0.045 4.045 8 C -0.164 4.164 9 C 0.555 3.445 10 O -0.563 6.563 11 N -0.698 5.698 12 C 0.158 3.842 13 H 0.078 0.922 14 C 0.132 3.868 15 N -0.619 5.619 16 C -0.246 4.246 17 H 0.080 0.920 18 C -0.060 4.060 19 N -0.946 5.946 20 Si 0.983 3.017 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.133 3.867 25 C 0.093 3.907 26 H 0.090 0.910 27 O -0.568 6.568 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.414 0.586 35 H 0.040 0.960 36 H 0.015 0.985 37 H 0.251 0.749 38 H 0.091 0.909 39 H -0.009 1.009 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.514 19.120 -5.450 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.006 4.006 3 C -0.184 4.184 4 C 0.102 3.898 5 F -0.116 7.116 6 C -0.180 4.180 7 C -0.063 4.063 8 C -0.167 4.167 9 C 0.344 3.656 10 O -0.444 6.444 11 N -0.350 5.350 12 C 0.052 3.948 13 H 0.097 0.903 14 C 0.005 3.995 15 N -0.346 5.346 16 C -0.375 4.375 17 H 0.098 0.902 18 C -0.252 4.252 19 N -0.595 5.595 20 Si 0.811 3.189 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.199 1.199 24 C 0.007 3.993 25 C 0.032 3.968 26 H 0.107 0.893 27 O -0.375 6.375 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.177 0.823 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.252 0.748 35 H 0.058 0.942 36 H 0.033 0.967 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.009 0.991 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 7.290 19.443 -5.475 21.474 hybrid contribution 0.270 -1.120 0.738 1.368 sum 7.560 18.323 -4.737 20.380 Atomic orbital electron populations 1.21054 0.89511 1.03573 1.03462 1.19968 0.97304 0.90904 0.92462 1.21152 0.92378 0.99452 1.05379 1.18096 0.90303 0.81587 0.99822 1.91522 1.80460 1.46123 1.93488 1.21325 1.02499 0.90025 1.04192 1.21409 0.91723 0.99539 0.93671 1.19817 0.94622 0.92231 1.10028 1.18577 0.86959 0.84307 0.75719 1.90740 1.15257 1.87458 1.50924 1.45679 1.11309 1.04418 1.73599 1.21545 0.95036 0.82331 0.95885 0.90344 1.21680 0.97652 0.85478 0.94688 1.44532 1.75464 1.02603 1.12050 1.19407 1.36181 0.90674 0.91232 0.90198 1.25614 1.01561 0.97123 1.00949 1.69950 1.51230 1.08593 1.29703 0.85093 0.77914 0.77197 0.78743 1.20883 1.21620 1.19944 1.22380 0.96429 0.95008 0.85504 1.23235 0.97901 0.94082 0.81568 0.89256 1.86389 1.72252 1.57865 1.21007 0.90703 0.90676 0.89861 0.82258 0.81382 0.82091 0.74803 0.94211 0.96675 0.93958 0.89097 0.99091 0.75195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 8.73 71.24 0.62 -2.04 16 2 C -0.01 -0.11 5.91 -19.62 -0.12 -0.23 16 3 C -0.17 -2.86 9.64 22.27 0.21 -2.64 16 4 C 0.12 2.04 7.31 22.47 0.16 2.20 16 5 F -0.14 -2.38 17.26 44.97 0.78 -1.61 16 6 C -0.16 -2.31 10.01 22.27 0.22 -2.08 16 7 C -0.04 -0.73 9.52 22.52 0.21 -0.51 16 8 C -0.16 -3.74 5.87 -20.09 -0.12 -3.85 16 9 C 0.55 16.46 7.69 86.75 0.67 17.13 16 10 O -0.56 -20.72 13.07 -3.95 -0.05 -20.77 16 11 N -0.70 -19.56 5.08 -439.90 -2.23 -21.79 16 12 C 0.16 5.77 2.97 46.18 0.14 5.90 16 13 H 0.08 3.26 7.69 -2.39 -0.02 3.24 16 14 C 0.13 5.69 6.99 86.73 0.61 6.30 16 15 N -0.62 -31.71 3.39 -691.97 -2.35 -34.06 16 16 C -0.25 -13.70 10.27 84.03 0.86 -12.84 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 18 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 19 N -0.95 -54.15 10.09 21.65 0.22 -53.93 16 20 Si 0.98 44.62 29.55 68.60 2.03 46.65 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 C 0.13 6.30 5.62 86.86 0.49 6.79 16 25 C 0.09 3.26 4.04 31.99 0.13 3.39 16 26 H 0.09 2.70 8.00 -2.39 -0.02 2.68 16 27 O -0.57 -17.81 13.47 -148.98 -2.01 -19.82 16 28 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.07 2.12 5.85 -2.39 -0.01 2.11 16 30 H 0.08 1.38 8.04 -2.39 -0.02 1.36 16 31 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.16 1.75 6.45 -2.91 -0.02 1.73 16 34 H 0.41 8.60 6.59 -92.71 -0.61 7.99 16 35 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 38 H 0.09 4.73 5.87 -2.39 -0.01 4.71 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 40 H 0.40 9.05 9.12 -74.05 -0.68 8.38 16 Total: -1.00 -70.32 335.63 0.76 -69.57 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.19 Total: 21.09 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 4.56 Total: 14.68 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -4.36 Total: -109.78 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -2.06 Total: -40.59 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.32 0.76 -69.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078042389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.251 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds