Wall clock time and date at job start Fri Apr 10 2020 17:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37889 * 120.06148 * 2 1 4 4 C 1.38421 * 120.21831 * 180.23656 * 3 2 1 5 5 C 1.38244 * 120.33937 * 359.78086 * 4 3 2 6 6 C 1.38281 * 120.11602 * 0.02562 * 5 4 3 7 7 F 1.35101 * 120.11209 * 179.97438 * 6 5 4 8 8 C 1.39623 * 120.06029 * 179.79002 * 2 1 3 9 9 C 1.47700 * 120.16460 * 0.02562 * 8 2 1 10 10 O 1.21563 * 119.99954 * 269.72406 * 9 8 2 11 11 N 1.34774 * 119.99733 * 89.72452 * 9 8 2 12 12 C 1.46496 * 119.99681 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.92089 * 31.10246 * 12 11 9 14 14 C 1.54915 * 111.00547 * 267.19663 * 12 11 9 15 15 N 1.47425 * 104.83334 * 204.91767 * 14 12 11 16 16 C 1.36938 * 125.64998 * 204.16451 * 15 14 12 17 17 H 1.07994 * 119.99970 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00073 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00035 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99990 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47265 * 59.99929 * 20 18 16 22 22 H 1.48507 * 109.47363 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47157 * 300.00028 * 20 18 16 24 24 C 1.47022 * 108.70334 * 24.12789 * 15 14 12 25 25 C 1.54327 * 107.27336 * 358.94217 * 24 15 14 26 26 H 1.08993 * 110.72079 * 96.16743 * 25 24 15 27 27 O 1.42893 * 110.72400 * 219.44644 * 25 24 15 28 28 H 1.08998 * 109.47222 * 270.21220 * 1 2 3 29 29 H 1.09000 * 109.46937 * 30.21600 * 1 2 3 30 30 H 1.09001 * 109.46995 * 150.20806 * 1 2 3 31 31 H 1.08000 * 119.89332 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.82957 * 179.76952 * 4 3 2 33 33 H 1.07999 * 119.94090 * 179.97438 * 5 4 3 34 34 H 0.97002 * 120.00096 * 0.02562 * 11 9 8 35 35 H 1.08997 * 110.36462 * 86.07761 * 14 12 11 36 36 H 1.08997 * 110.36247 * 323.75428 * 14 12 11 37 37 H 0.96998 * 119.99944 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.88723 * 239.52626 * 24 15 14 39 39 H 1.09000 * 110.01436 * 118.43179 * 24 15 14 40 40 H 0.96707 * 113.99718 * 298.54499 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1934 0.0000 4 6 3.5820 1.1972 -0.0049 5 6 4.2835 0.0060 -0.0053 6 6 3.6050 -1.1989 -0.0013 7 9 4.2907 -2.3629 -0.0023 8 6 2.2064 -1.2084 0.0044 9 6 1.4729 -2.4904 0.0086 10 8 1.1751 -3.0169 1.0630 11 7 1.1339 -3.0765 -1.1568 12 6 0.4069 -4.3483 -1.1527 13 1 -0.2394 -4.4244 -0.2782 14 6 1.3851 -5.5474 -1.2262 15 7 0.5951 -6.6433 -1.8162 16 6 0.8453 -7.9807 -1.6613 17 1 1.6835 -8.3076 -1.0639 18 6 0.0215 -8.9162 -2.2720 19 7 -1.0003 -8.5179 -2.9997 20 14 0.3624 -10.7405 -2.0600 21 1 0.2975 -11.0921 -0.6186 22 1 -0.6545 -11.5242 -2.8064 23 1 1.7149 -11.0558 -2.5860 24 6 -0.5064 -6.0626 -2.5980 25 6 -0.4058 -4.5287 -2.4621 26 1 0.1291 -4.1007 -3.3099 27 8 -1.7043 -3.9460 -2.3354 28 1 -0.3633 0.0038 1.0276 29 1 -0.3633 0.8881 -0.5172 30 1 -0.3633 -0.8919 -0.5106 31 1 1.6570 2.1283 -0.0004 32 1 4.1166 2.1356 -0.0087 33 1 5.3635 0.0165 -0.0096 34 1 1.3719 -2.6566 -1.9982 35 1 1.7260 -5.8205 -0.2276 36 1 2.2344 -5.3053 -1.8650 37 1 -1.5758 -9.1716 -3.4267 38 1 -1.4625 -6.4076 -2.2044 39 1 -0.4119 -6.3490 -3.6454 40 1 -2.2797 -4.0980 -3.0977 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078280245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:25 Heat of formation + Delta-G solvation = -101.466413 kcal Electronic energy + Delta-G solvation = -25517.223366 eV Core-core repulsion = 21632.099084 eV Total energy + Delta-G solvation = -3885.124283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.06963 -41.47425 -40.02074 -39.07416 -36.71353 -35.68548 -33.98002 -33.55700 -31.97238 -30.18300 -28.87240 -28.15642 -26.49902 -24.78139 -22.90392 -22.45019 -22.05811 -21.63767 -19.34964 -18.84525 -18.29967 -18.00642 -17.72057 -17.50462 -16.86627 -16.55124 -16.22774 -15.90004 -15.60384 -15.43028 -14.83995 -14.67877 -14.56279 -14.50539 -14.33789 -14.22489 -13.83882 -13.23605 -13.19463 -13.18929 -12.86267 -12.79333 -12.75244 -12.71858 -12.32460 -12.15903 -11.92346 -11.62784 -11.30795 -10.94127 -10.79990 -10.33679 -10.00491 -9.70737 -9.01830 -7.92031 -5.29814 -0.09917 0.12953 1.30221 1.44011 1.47740 1.53803 1.88958 2.44949 2.48813 3.06034 3.08462 3.27968 3.44151 3.47901 3.68594 3.82251 3.90943 3.99051 4.11375 4.17939 4.27585 4.37110 4.47410 4.51635 4.64789 4.69213 4.73437 4.86858 4.95280 5.04852 5.17159 5.28028 5.29517 5.33567 5.39809 5.40027 5.61608 5.82563 6.09339 6.30005 6.82523 6.97643 7.01680 7.64435 8.27189 9.17544 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.003516 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.757318 B = 7961.695276 C = 8760.366427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.028 4.028 3 C -0.122 4.122 4 C -0.057 4.057 5 C -0.158 4.158 6 C 0.105 3.895 7 F -0.151 7.151 8 C -0.186 4.186 9 C 0.568 3.432 10 O -0.575 6.575 11 N -0.690 5.690 12 C 0.151 3.849 13 H 0.076 0.924 14 C 0.131 3.869 15 N -0.621 5.621 16 C -0.254 4.254 17 H 0.079 0.921 18 C -0.058 4.058 19 N -0.946 5.946 20 Si 0.983 3.017 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.274 1.274 24 C 0.161 3.839 25 C 0.094 3.906 26 H 0.094 0.906 27 O -0.566 6.566 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.173 0.827 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.416 0.584 35 H 0.030 0.970 36 H 0.039 0.961 37 H 0.251 0.749 38 H 0.024 0.976 39 H 0.029 0.971 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 25.472 0.371 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.029 4.029 3 C -0.139 4.139 4 C -0.074 4.074 5 C -0.176 4.176 6 C 0.086 3.914 7 F -0.129 7.129 8 C -0.190 4.190 9 C 0.354 3.646 10 O -0.454 6.454 11 N -0.340 5.340 12 C 0.045 3.955 13 H 0.094 0.906 14 C 0.004 3.996 15 N -0.348 5.348 16 C -0.383 4.383 17 H 0.097 0.903 18 C -0.251 4.251 19 N -0.594 5.594 20 Si 0.810 3.190 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.200 1.200 24 C 0.036 3.964 25 C 0.034 3.966 26 H 0.111 0.889 27 O -0.374 6.374 28 H 0.094 0.906 29 H 0.129 0.871 30 H 0.069 0.931 31 H 0.190 0.810 32 H 0.198 0.802 33 H 0.180 0.820 34 H 0.253 0.747 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.666 25.039 1.599 25.960 hybrid contribution -0.028 -2.109 -0.677 2.215 sum 6.639 22.930 0.922 23.889 Atomic orbital electron populations 1.20970 0.89536 1.04194 1.03370 1.20037 0.96971 0.90770 0.95124 1.21490 0.94741 0.97663 1.00049 1.21665 0.93966 0.98429 0.93372 1.21439 1.02372 0.90007 1.03814 1.18073 0.88197 0.82610 1.02567 1.91509 1.79607 1.47973 1.93834 1.19791 0.92638 0.93916 1.12607 1.18559 0.78011 0.84435 0.83558 1.90794 1.55872 1.66019 1.32716 1.45726 1.56992 1.22420 1.08906 1.21824 0.92497 0.82678 0.98538 0.90628 1.21901 0.93778 0.87484 0.96446 1.44491 1.31142 1.01224 1.57983 1.19403 1.10593 0.81396 1.26882 0.90317 1.25653 0.97380 1.02537 0.99579 1.70106 1.18658 1.33452 1.37209 0.85106 0.77326 0.79047 0.77541 1.20675 1.21392 1.20026 1.21658 0.91165 0.88591 0.95020 1.23114 0.84472 0.93137 0.95879 0.88883 1.86417 1.25162 1.77516 1.48295 0.90560 0.87144 0.93133 0.80992 0.80248 0.82010 0.74719 0.95131 0.94308 0.93977 0.95751 0.95270 0.75245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 9.62 71.24 0.69 -1.55 16 2 C -0.03 -0.54 5.91 -19.61 -0.12 -0.66 16 3 C -0.12 -1.37 9.68 22.23 0.22 -1.16 16 4 C -0.06 -0.54 10.04 22.31 0.22 -0.32 16 5 C -0.16 -2.43 10.01 22.28 0.22 -2.21 16 6 C 0.11 2.61 7.29 22.67 0.17 2.77 16 7 F -0.15 -4.59 16.83 44.97 0.76 -3.83 16 8 C -0.19 -4.94 5.64 -20.05 -0.11 -5.05 16 9 C 0.57 19.76 5.36 86.74 0.47 20.22 16 10 O -0.57 -25.54 16.75 -3.91 -0.07 -25.61 16 11 N -0.69 -22.19 5.19 -438.95 -2.28 -24.47 16 12 C 0.15 6.02 3.15 46.39 0.15 6.16 16 13 H 0.08 3.53 7.54 -2.39 -0.02 3.51 16 14 C 0.13 6.00 6.93 86.86 0.60 6.61 16 15 N -0.62 -33.44 3.39 -691.99 -2.35 -35.79 16 16 C -0.25 -14.87 10.28 84.03 0.86 -14.01 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 18 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 19 N -0.95 -56.43 10.31 21.65 0.22 -56.21 16 20 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 24 C 0.16 7.92 5.14 86.73 0.45 8.36 16 25 C 0.09 3.47 3.98 31.79 0.13 3.60 16 26 H 0.09 2.84 8.00 -2.39 -0.02 2.82 16 27 O -0.57 -18.87 13.39 -148.98 -2.00 -20.87 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.11 1.18 8.09 -2.39 -0.02 1.16 16 30 H 0.05 1.17 7.08 -2.39 -0.02 1.15 16 31 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 32 H 0.18 0.24 8.06 -2.91 -0.02 0.21 16 33 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.42 10.53 8.55 -92.71 -0.79 9.73 16 35 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.02 1.36 7.29 -2.39 -0.02 1.34 16 39 H 0.03 1.53 7.51 -2.39 -0.02 1.51 16 40 H 0.40 9.84 9.11 -74.05 -0.67 9.16 16 Total: -1.00 -79.85 343.17 0.34 -79.51 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -0.38 Total: 18.82 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 4.40 Total: 19.89 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -4.40 Total: -116.47 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -2.06 Total: -46.48 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.76 Total: -3.83 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -79.85 0.34 -79.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078280245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.958 kcal (2) G-P(sol) polarization free energy of solvation -79.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds