Wall clock time and date at job start Fri Apr 10 2020 17:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00453 * 2 1 4 4 H 1.08997 * 110.89109 * 32.42340 * 3 2 1 5 5 C 1.54912 * 111.00240 * 268.54604 * 3 2 1 6 6 N 1.47426 * 104.83261 * 204.87645 * 5 3 2 7 7 C 1.36941 * 125.64875 * 203.86480 * 6 5 3 8 8 H 1.08001 * 120.00063 * 180.02562 * 7 6 5 9 9 C 1.38810 * 119.99930 * 0.02562 * 7 6 5 10 10 N 1.31617 * 120.00219 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00125 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47105 * 89.99764 * 11 9 7 13 13 H 1.48498 * 109.47318 * 210.00148 * 11 9 7 14 14 H 1.48496 * 109.46962 * 329.99931 * 11 9 7 15 15 C 1.47024 * 108.70449 * 24.12870 * 6 5 3 16 16 C 1.54327 * 107.26774 * 358.94057 * 15 6 5 17 17 H 1.08996 * 110.72159 * 96.17410 * 16 15 6 18 18 N 1.46504 * 110.87059 * 219.37229 * 16 15 6 19 19 C 1.34772 * 119.99964 * 268.61146 * 18 16 15 20 20 O 1.21552 * 119.99969 * 0.02562 * 19 18 16 21 21 C 1.47851 * 120.00084 * 179.97438 * 19 18 16 22 22 C 1.39593 * 120.13586 * 179.97438 * 21 19 18 23 23 C 1.37940 * 119.90764 * 180.02562 * 22 21 19 24 24 C 1.38338 * 120.17443 * 0.02562 * 23 22 21 25 25 C 1.38552 * 120.26594 * 359.97438 * 24 23 22 26 26 F 1.35102 * 119.95258 * 180.02562 * 25 24 23 27 27 C 1.38204 * 120.09223 * 359.72398 * 25 24 23 28 28 H 1.09003 * 109.46802 * 60.00009 * 1 2 3 29 29 H 1.09002 * 109.47567 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46990 * 300.00163 * 1 2 3 31 31 H 1.09002 * 110.36496 * 86.04060 * 5 3 2 32 32 H 1.08997 * 110.36790 * 323.71696 * 5 3 2 33 33 H 0.97004 * 120.00482 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.88316 * 118.35549 * 15 6 5 35 35 H 1.09002 * 109.88101 * 239.52444 * 15 6 5 36 36 H 0.96997 * 119.99769 * 88.60981 * 18 16 15 37 37 H 1.08005 * 120.04437 * 359.97438 * 22 21 19 38 38 H 1.08004 * 119.91149 * 180.02562 * 23 22 21 39 39 H 1.08003 * 119.86690 * 180.02562 * 24 23 22 40 40 H 1.08007 * 120.08955 * 180.27906 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3831 2.0101 0.5460 5 6 2.2697 1.7976 -1.4457 6 7 3.3606 2.7811 -1.3195 7 6 3.6254 3.7967 -2.1992 8 1 4.4521 4.4673 -2.0169 9 6 2.8313 3.9641 -3.3254 10 7 1.8235 3.1472 -3.5474 11 14 3.1929 5.3489 -4.5258 12 1 4.1357 4.8676 -5.5672 13 1 1.9288 5.7899 -5.1681 14 1 3.8017 6.4900 -3.7962 15 6 4.1211 2.4873 -0.0960 16 6 3.4485 1.2747 0.5813 17 1 3.9555 0.3496 0.3073 18 7 3.4227 1.4378 2.0370 19 6 4.4339 0.9567 2.7870 20 8 5.3674 0.3879 2.2556 21 6 4.4082 1.1218 4.2560 22 6 5.4538 0.6241 5.0356 23 6 5.4248 0.7804 6.4058 24 6 4.3620 1.4284 7.0094 25 6 3.3204 1.9252 6.2426 26 9 2.2859 2.5575 6.8386 27 6 3.3413 1.7803 4.8683 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.3760 2.2723 -1.8509 32 1 2.5794 0.9667 -2.0796 33 1 1.2687 3.2639 -4.3345 34 1 5.1529 2.2448 -0.3502 35 1 4.0942 3.3476 0.5728 36 1 2.6780 1.8921 2.4610 37 1 6.2839 0.1168 4.5666 38 1 6.2339 0.3957 7.0090 39 1 4.3446 1.5483 8.0826 40 1 2.5315 2.1716 4.2702 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081308812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:37 Heat of formation + Delta-G solvation = -62.105923 kcal Electronic energy + Delta-G solvation = -25119.987408 eV Core-core repulsion = 21236.569925 eV Total energy + Delta-G solvation = -3883.417484 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.19182 -40.30968 -38.76364 -37.80191 -35.93870 -34.24048 -32.23861 -31.25220 -30.73352 -28.80588 -27.19343 -26.13355 -24.79566 -23.80985 -22.84513 -20.95615 -20.63030 -19.94577 -18.53233 -17.08836 -17.01766 -16.50186 -16.28367 -16.02255 -15.91713 -15.44254 -14.92707 -14.75866 -14.54042 -14.33013 -14.24630 -13.73793 -13.45260 -13.22772 -12.92247 -12.49383 -12.27563 -12.12119 -11.94471 -11.74605 -11.49072 -11.31814 -11.04061 -10.86050 -10.83279 -10.22241 -9.98514 -9.91434 -9.82321 -9.49755 -9.15219 -9.07458 -8.74432 -8.72140 -6.93292 -5.72462 -3.15554 0.44511 0.82557 2.67417 3.12333 3.37677 3.42679 3.44356 3.54303 3.85292 4.08558 4.33272 4.41030 4.47318 4.78422 4.79350 4.94020 5.15252 5.31963 5.39744 5.48464 5.58596 5.59055 5.64281 5.65567 5.68610 5.81310 5.88343 5.94620 5.98073 6.04830 6.15596 6.38977 6.45822 6.63246 6.82868 7.21995 7.50525 7.57118 7.69772 7.75837 8.21094 8.26025 9.13019 9.73412 10.35572 11.31504 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.003349 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.351493 B = 8359.796039 C = 8777.351060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.054 3.946 4 H 0.066 0.934 5 C 0.140 3.860 6 N -0.600 5.600 7 C -0.224 4.224 8 H 0.081 0.919 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.918 3.082 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.136 3.864 17 H 0.106 0.894 18 N -0.708 5.708 19 C 0.557 3.443 20 O -0.529 6.529 21 C -0.097 4.097 22 C -0.071 4.071 23 C -0.098 4.098 24 C -0.134 4.134 25 C 0.092 3.908 26 F -0.137 7.137 27 C -0.123 4.123 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.112 0.888 32 H 0.027 0.973 33 H 0.253 0.747 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.397 0.603 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.244 -4.679 19.890 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.006 4.006 4 H 0.084 0.916 5 C 0.015 3.985 6 N -0.328 5.328 7 C -0.352 4.352 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.032 3.968 17 H 0.124 0.876 18 N -0.358 5.358 19 C 0.343 3.657 20 O -0.407 6.407 21 C -0.101 4.101 22 C -0.090 4.090 23 C -0.116 4.116 24 C -0.153 4.153 25 C 0.073 3.927 26 F -0.116 7.116 27 C -0.142 4.142 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.130 0.870 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.232 0.768 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.890 -5.140 19.303 19.995 hybrid contribution -0.653 1.263 -0.284 1.451 sum 0.237 -3.876 19.018 19.411 Atomic orbital electron populations 1.22702 0.81500 1.01951 1.00052 1.87841 1.19317 1.27620 1.95140 1.24030 0.92084 0.83851 1.00588 0.91606 1.22327 0.95354 0.91915 0.88950 1.44305 1.31804 1.33306 1.23393 1.19099 1.11305 1.04326 1.00439 0.90161 1.24804 0.98003 0.99340 0.98366 1.69752 1.20030 1.38714 1.28636 0.86025 0.77088 0.81156 0.80945 1.21495 1.21620 1.20629 1.21606 0.95261 0.93532 0.89286 1.22197 0.96711 1.00665 0.77276 0.87579 1.45935 1.23454 1.58532 1.07867 1.18096 0.82675 0.78926 0.85988 1.90795 1.34107 1.42290 1.73480 1.19916 0.95694 1.00665 0.93792 1.21405 0.97697 0.96712 0.93230 1.21032 0.97944 0.98159 0.94484 1.21357 0.93657 0.99342 1.00910 1.17522 0.86583 0.97760 0.90845 1.91529 1.56365 1.79764 1.83900 1.21335 0.99457 1.00088 0.93331 0.93354 0.90290 0.94821 0.87004 0.95474 0.93579 0.94701 0.95154 0.76794 0.83742 0.84200 0.84324 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.89 101.05 1.10 1.60 16 2 O -0.38 -6.92 10.51 -35.23 -0.37 -7.29 16 3 C 0.05 1.02 3.11 -24.58 -0.08 0.95 16 4 H 0.07 1.16 7.77 -51.93 -0.40 0.75 16 5 C 0.14 3.37 5.61 -2.53 -0.01 3.36 16 6 N -0.60 -15.27 3.39 -170.07 -0.58 -15.85 16 7 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 10 N -0.92 -26.33 10.09 55.49 0.56 -25.77 16 11 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.13 2.80 7.00 -3.06 -0.02 2.78 16 16 C 0.14 2.54 3.05 -66.09 -0.20 2.34 16 17 H 0.11 2.18 7.55 -51.93 -0.39 1.79 16 18 N -0.71 -10.64 5.06 -52.97 -0.27 -10.91 16 19 C 0.56 8.54 7.77 -12.33 -0.10 8.44 16 20 O -0.53 -9.92 15.99 5.32 0.09 -9.84 16 21 C -0.10 -1.16 5.87 -104.98 -0.62 -1.78 16 22 C -0.07 -0.73 9.59 -39.19 -0.38 -1.11 16 23 C -0.10 -0.76 10.03 -39.65 -0.40 -1.15 16 24 C -0.13 -1.06 10.02 -39.43 -0.40 -1.46 16 25 C 0.09 0.90 7.29 -39.48 -0.29 0.61 16 26 F -0.14 -1.43 17.26 2.25 0.04 -1.39 16 27 C -0.12 -1.27 9.52 -39.11 -0.37 -1.64 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.11 2.96 5.89 -51.93 -0.31 2.65 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 36 H 0.40 4.89 6.60 -40.82 -0.27 4.62 16 37 H 0.14 1.47 7.65 -52.48 -0.40 1.07 16 38 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 40 H 0.14 1.25 6.40 -52.48 -0.34 0.91 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -32.02 341.54 -7.44 -39.46 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.03 Total: 3.43 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -2.00 Total: 6.25 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.29 Total: -52.53 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.29 Total: -17.13 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.02 -7.44 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081308812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.647 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds