Wall clock time and date at job start Fri Apr 10 2020 17:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00059 * 2 1 4 4 H 1.09008 * 110.91777 * 26.09796 * 3 2 1 5 5 C 1.54906 * 111.00415 * 262.19970 * 3 2 1 6 6 N 1.47430 * 104.83187 * 204.91705 * 5 3 2 7 7 C 1.36935 * 125.64520 * 204.09095 * 6 5 3 8 8 H 1.08010 * 119.99931 * 180.02562 * 7 6 5 9 9 C 1.38810 * 120.00409 * 0.04094 * 7 6 5 10 10 N 1.31616 * 120.00163 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00053 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46893 * 59.99931 * 11 9 7 13 13 H 1.48502 * 109.46914 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.46761 * 299.99731 * 11 9 7 15 15 C 1.47022 * 108.70496 * 24.12421 * 6 5 3 16 16 C 1.54332 * 107.26654 * 358.94198 * 15 6 5 17 17 H 1.08996 * 110.71381 * 96.34892 * 16 15 6 18 18 N 1.46502 * 110.71704 * 219.44068 * 16 15 6 19 19 C 1.34771 * 120.00142 * 273.55026 * 18 16 15 20 20 O 1.21552 * 120.00226 * 359.97438 * 19 18 16 21 21 C 1.47936 * 119.99971 * 180.02562 * 19 18 16 22 22 C 1.39983 * 120.11516 * 179.97438 * 21 19 18 23 23 C 1.38419 * 117.96692 * 180.02562 * 22 21 19 24 24 C 1.39345 * 118.03968 * 0.02562 * 23 22 21 25 25 O 1.35512 * 120.03026 * 179.97438 * 24 23 22 26 26 N 1.32681 * 119.93854 * 0.25601 * 24 23 22 27 27 N 1.28354 * 122.19835 * 359.46283 * 26 24 23 28 28 H 1.08994 * 109.47179 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47081 * 299.99968 * 1 2 3 30 30 H 1.08999 * 109.47619 * 59.99607 * 1 2 3 31 31 H 1.09001 * 110.36971 * 86.07923 * 5 3 2 32 32 H 1.08998 * 110.45846 * 323.79455 * 5 3 2 33 33 H 0.96997 * 120.00416 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.87909 * 239.52812 * 15 6 5 35 35 H 1.08993 * 109.88151 * 118.35748 * 15 6 5 36 36 H 0.97000 * 119.99762 * 93.54887 * 18 16 15 37 37 H 1.08000 * 121.01515 * 0.02562 * 22 21 19 38 38 H 1.08003 * 120.97945 * 179.97438 * 23 22 21 39 39 H 0.96700 * 114.00230 * 90.00221 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0329 0.4479 5 6 2.4154 1.7328 -1.4327 6 7 3.4909 2.7229 -1.2413 7 6 3.8429 3.7011 -2.1326 8 1 4.6493 4.3804 -1.8982 9 6 3.1634 3.8199 -3.3371 10 7 2.1809 2.9921 -3.6229 11 14 3.6442 5.1540 -4.5532 12 1 5.0610 4.9679 -4.9573 13 1 2.7717 5.0689 -5.7518 14 1 3.4817 6.4857 -3.9167 15 6 4.1233 2.4855 0.0645 16 6 3.3823 1.3033 0.7242 17 1 3.9135 0.3682 0.5470 18 7 3.2108 1.5357 2.1605 19 6 4.1855 1.1823 3.0215 20 8 5.2068 0.6702 2.6064 21 6 4.0120 1.4164 4.4718 22 6 5.0227 1.0498 5.3683 23 6 4.8134 1.2887 6.7156 24 6 3.6100 1.8787 7.0970 25 8 3.3628 2.1303 8.4054 26 7 2.7042 2.1889 6.1785 27 7 2.8968 1.9736 4.9279 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.5685 2.1874 -1.9468 32 1 2.7847 0.8758 -1.9959 33 1 1.7058 3.0753 -4.4644 34 1 4.0315 3.3749 0.6879 35 1 5.1747 2.2336 -0.0731 36 1 2.3956 1.9440 2.4917 37 1 5.9377 0.5944 5.0194 38 1 5.5604 1.0248 7.4496 39 1 3.6563 3.0032 8.7004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081313492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:40 Heat of formation + Delta-G solvation = -47.289393 kcal Electronic energy + Delta-G solvation = -25120.276148 eV Core-core repulsion = 21257.421119 eV Total energy + Delta-G solvation = -3862.855029 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.45080 -41.01225 -39.64266 -38.58908 -37.53781 -35.78617 -34.35016 -33.85100 -32.64892 -30.56879 -28.94140 -27.52628 -26.72251 -25.96440 -25.36561 -22.84008 -22.30104 -21.58617 -20.24124 -19.68569 -19.03347 -18.59997 -17.95489 -17.29271 -17.15917 -16.62109 -16.36992 -16.12564 -15.81826 -15.57705 -15.37134 -15.13109 -14.80484 -14.74555 -14.38633 -13.94031 -13.74348 -13.41854 -13.18157 -13.05649 -13.00840 -12.69061 -12.58054 -12.35896 -12.09449 -11.89342 -11.60354 -11.48285 -11.43069 -10.94590 -10.78360 -10.70368 -10.60865 -10.22118 -8.96949 -7.79954 -5.27281 -0.80641 -0.40427 1.38664 1.48296 1.51699 1.57936 1.72633 2.20016 2.41435 2.46217 2.72204 2.81823 3.30866 3.38667 3.54083 3.61624 3.71263 3.83148 3.88807 3.94451 4.03356 4.33275 4.44705 4.47731 4.60301 4.65674 4.74131 4.82178 4.87024 4.87908 4.90806 5.25536 5.34975 5.45109 5.68760 6.18497 6.25965 6.29456 6.45043 6.88987 7.05038 7.31984 7.69562 8.31975 9.21488 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.003240 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.843214 B = 8639.480827 C = 9297.372589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.076 3.924 4 H 0.087 0.913 5 C 0.148 3.852 6 N -0.618 5.618 7 C -0.245 4.245 8 H 0.084 0.916 9 C -0.061 4.061 10 N -0.947 5.947 11 Si 0.985 3.015 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.274 1.274 15 C 0.132 3.868 16 C 0.150 3.850 17 H 0.091 0.909 18 N -0.685 5.685 19 C 0.578 3.422 20 O -0.553 6.553 21 C 0.004 3.996 22 C -0.047 4.047 23 C -0.115 4.115 24 C 0.279 3.721 25 O -0.475 6.475 26 N -0.288 5.288 27 N -0.200 5.200 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.087 0.913 32 H -0.006 1.006 33 H 0.250 0.750 34 H 0.039 0.961 35 H 0.025 0.975 36 H 0.418 0.582 37 H 0.183 0.817 38 H 0.208 0.792 39 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -2.928 23.267 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C 0.016 3.984 4 H 0.105 0.895 5 C 0.022 3.978 6 N -0.346 5.346 7 C -0.374 4.374 8 H 0.101 0.899 9 C -0.254 4.254 10 N -0.596 5.596 11 Si 0.812 3.188 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.200 1.200 15 C 0.006 3.994 16 C 0.045 3.955 17 H 0.109 0.891 18 N -0.336 5.336 19 C 0.362 3.638 20 O -0.430 6.430 21 C -0.143 4.143 22 C -0.076 4.076 23 C -0.145 4.145 24 C 0.094 3.906 25 O -0.285 6.285 26 N -0.141 5.141 27 N -0.049 5.049 28 H 0.123 0.877 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.012 0.988 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.255 0.745 37 H 0.200 0.800 38 H 0.225 0.775 39 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 0.863 -3.293 22.548 22.803 hybrid contribution 1.096 0.796 -0.563 1.466 sum 1.959 -2.497 21.985 22.213 Atomic orbital electron populations 1.22993 0.79284 1.03985 1.00689 1.87827 1.21741 1.26712 1.94966 1.23623 0.93088 0.84961 0.96692 0.89546 1.22046 0.93324 0.90398 0.92071 1.44529 1.38098 1.35275 1.16725 1.19426 1.14224 1.06865 0.96844 0.89856 1.25658 0.98607 1.01575 0.99574 1.69979 1.25329 1.40009 1.24298 0.85065 0.77226 0.78638 0.77843 1.20598 1.21761 1.19994 1.21666 0.95409 0.95336 0.87033 1.21832 0.96375 0.98507 0.78822 0.89082 1.45711 1.20703 1.61311 1.05843 1.17772 0.83187 0.78084 0.84765 1.90812 1.28829 1.44744 1.78621 1.22677 0.94836 1.01319 0.95500 1.22660 0.99547 0.93158 0.92202 1.22949 0.97538 0.97172 0.96832 1.21228 0.89782 0.93029 0.86546 1.84698 1.85013 1.42242 1.16522 1.72997 1.28233 1.16877 0.96035 1.73202 1.17683 1.07448 1.06612 0.87716 0.92421 0.94350 0.89483 0.98845 0.94011 0.94330 0.95686 0.74460 0.79980 0.77539 0.70254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.85 113.37 1.23 1.96 16 2 O -0.39 -14.42 10.51 -148.98 -1.57 -15.98 16 3 C 0.08 2.97 3.15 31.98 0.10 3.07 16 4 H 0.09 3.09 7.69 -2.38 -0.02 3.08 16 5 C 0.15 7.44 5.62 86.85 0.49 7.93 16 6 N -0.62 -32.57 3.39 -691.98 -2.35 -34.92 16 7 C -0.25 -13.84 10.27 84.03 0.86 -12.98 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 9 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 10 N -0.95 -55.89 10.09 21.65 0.22 -55.67 16 11 Si 0.98 45.37 29.55 68.60 2.03 47.39 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 C 0.13 5.82 6.99 86.73 0.61 6.43 16 16 C 0.15 5.73 2.97 46.18 0.14 5.87 16 17 H 0.09 3.76 7.69 -2.39 -0.02 3.74 16 18 N -0.69 -21.47 5.12 -439.69 -2.25 -23.72 16 19 C 0.58 17.59 7.80 86.81 0.68 18.27 16 20 O -0.55 -19.67 16.11 -3.88 -0.06 -19.74 16 21 C 0.00 0.10 6.83 42.00 0.29 0.39 16 22 C -0.05 -0.78 9.72 22.74 0.22 -0.55 16 23 C -0.12 -1.23 10.14 22.58 0.23 -1.00 16 24 C 0.28 4.24 7.85 84.83 0.67 4.91 16 25 O -0.47 -4.76 13.56 -88.14 -1.20 -5.96 16 26 N -0.29 -6.57 11.54 -170.02 -1.96 -8.53 16 27 N -0.20 -5.05 10.73 -48.50 -0.52 -5.57 16 28 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 1.36 8.12 -2.38 -0.02 1.34 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 4.85 5.87 -2.39 -0.01 4.84 16 32 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 34 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.42 11.69 7.87 -92.71 -0.73 10.96 16 37 H 0.18 2.45 7.71 -2.91 -0.02 2.43 16 38 H 0.21 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.43 -0.36 9.06 -74.06 -0.67 -1.03 16 Total: -1.00 -75.87 338.43 -1.98 -77.84 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -0.29 Total: 13.57 kcal Atomic # 6 Polarization: 25.32 SS G_CDS: 5.97 Total: 31.29 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -6.86 Total: -128.42 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -2.82 Total: -41.68 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.87 -1.98 -77.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081313492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.555 kcal (2) G-P(sol) polarization free energy of solvation -75.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds