Wall clock time and date at job start Fri Apr 10 2020 17:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35664 * 116.99882 * 2 1 4 4 C 1.39496 * 120.01157 * 180.02562 * 3 2 1 5 5 N 1.31944 * 120.11723 * 180.02562 * 4 3 2 6 6 C 1.32195 * 120.14525 * 359.97157 * 5 4 3 7 7 C 1.39249 * 120.01699 * 359.97438 * 6 5 4 8 8 C 1.48130 * 120.05370 * 179.97438 * 7 6 5 9 9 O 1.21517 * 119.99906 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99489 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99557 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.88733 * 31.12319 * 11 10 8 13 13 C 1.55128 * 111.22250 * 267.21100 * 11 10 8 14 14 N 1.47424 * 104.72471 * 279.17340 * 13 11 10 15 15 C 1.36932 * 125.65028 * 155.81447 * 14 13 11 16 16 H 1.07997 * 119.99909 * 5.54497 * 15 14 13 17 17 C 1.38811 * 120.00206 * 185.54005 * 15 14 13 18 18 N 1.31624 * 119.99806 * 7.32256 * 17 15 14 19 19 Si 1.86804 * 120.00278 * 187.04744 * 17 15 14 20 20 H 1.48497 * 109.46911 * 265.29137 * 19 17 15 21 21 H 1.48506 * 109.46754 * 25.29225 * 19 17 15 22 22 H 1.48498 * 109.47070 * 145.28729 * 19 17 15 23 23 C 1.47026 * 108.70346 * 335.55946 * 14 13 11 24 24 C 1.54325 * 107.26784 * 1.28362 * 23 14 13 25 25 H 1.09002 * 110.71993 * 263.82671 * 24 23 14 26 26 O 1.42895 * 110.72067 * 140.55772 * 24 23 14 27 27 N 1.32163 * 120.01549 * 0.22535 * 3 2 1 28 28 H 1.09004 * 109.47287 * 300.00433 * 1 2 3 29 29 H 1.08998 * 109.47486 * 59.99876 * 1 2 3 30 30 H 1.09004 * 109.47625 * 180.02562 * 1 2 3 31 31 H 1.08008 * 119.94140 * 0.02562 * 4 3 2 32 32 H 1.07992 * 119.99285 * 179.97438 * 6 5 4 33 33 H 0.96997 * 120.00428 * 0.02562 * 10 8 7 34 34 H 1.09005 * 110.49595 * 160.33653 * 13 11 10 35 35 H 1.08997 * 110.34690 * 37.94047 * 13 11 10 36 36 H 0.97000 * 120.00110 * 179.71821 * 18 17 15 37 37 H 1.09006 * 109.88495 * 120.69700 * 23 14 13 38 38 H 1.08997 * 109.88227 * 241.86926 * 23 14 13 39 39 H 0.96700 * 114.00676 * 61.45304 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4378 1.2821 -0.0005 5 7 4.0390 2.4566 0.0000 6 6 3.3238 3.5684 0.0004 7 6 1.9329 3.5020 -0.0002 8 6 1.1308 4.7474 0.0009 9 8 1.6865 5.8280 0.0019 10 7 -0.2154 4.6817 -0.0002 11 6 -1.0088 5.9134 0.0003 12 1 -0.4859 6.7126 -0.5249 13 6 -1.3731 6.3460 1.4448 14 7 -2.5317 5.5089 1.8057 15 6 -2.9144 5.1821 3.0792 16 1 -2.4038 5.6181 3.9251 17 6 -3.9586 4.2905 3.2830 18 7 -4.4856 3.6496 2.2612 19 14 -4.6109 3.9944 5.0082 20 1 -3.9421 2.8044 5.5928 21 1 -4.3329 5.1836 5.8533 22 1 -6.0761 3.7602 4.9500 23 6 -3.2119 5.0881 0.5721 24 6 -2.4131 5.6705 -0.6130 25 1 -2.8536 6.6084 -0.9512 26 8 -2.3404 4.7288 -1.6853 27 7 1.3253 2.3174 0.0045 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 4.0254 0.3758 -0.0014 32 1 3.8184 4.5285 0.0013 33 1 -0.6589 3.8191 -0.0013 34 1 -1.6451 7.4013 1.4700 35 1 -0.5398 6.1520 2.1201 36 1 -5.2125 3.0235 2.4040 37 1 -3.2270 3.9999 0.5097 38 1 -4.2302 5.4764 0.5592 39 1 -3.2007 4.4838 -2.0527 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083836083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:52 Heat of formation + Delta-G solvation = -32.465139 kcal Electronic energy + Delta-G solvation = -25940.466933 eV Core-core repulsion = 22078.254732 eV Total energy + Delta-G solvation = -3862.212201 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51308 -39.59173 -38.49951 -37.71834 -35.12110 -34.49290 -33.60032 -31.72649 -31.19940 -28.60217 -27.70584 -27.22403 -25.46656 -24.38843 -23.79071 -21.47205 -20.46338 -19.84816 -18.66947 -18.37085 -17.12104 -16.95505 -16.73500 -16.43417 -16.41094 -15.75039 -14.93886 -14.81140 -14.58718 -14.23935 -14.12113 -13.79735 -13.29544 -13.12024 -12.75708 -12.48085 -12.21160 -12.03193 -11.75068 -11.67059 -11.55199 -11.32008 -11.02449 -10.92024 -10.76774 -10.43233 -10.20892 -10.15598 -9.91064 -9.36971 -9.32044 -8.95616 -8.81740 -8.58485 -6.94689 -5.81713 -3.17779 0.29301 0.93157 2.74577 2.79826 3.17037 3.33082 3.39478 3.41034 3.70589 3.81680 4.11235 4.29629 4.37922 4.54606 4.97696 5.03330 5.15161 5.18887 5.26328 5.31847 5.34592 5.45243 5.57821 5.63355 5.75623 5.89679 6.04469 6.17704 6.35022 6.52835 6.79252 6.86659 6.94803 7.17219 7.43170 7.45297 7.64852 7.84663 8.02653 8.12656 8.38553 9.08307 9.69210 10.32706 11.27880 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.004816 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.559474 B = 5812.041847 C = 6653.039194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.300 6.300 3 C 0.276 3.724 4 C 0.060 3.940 5 N -0.407 5.407 6 C 0.060 3.940 7 C 0.086 3.914 8 C 0.570 3.430 9 O -0.539 6.539 10 N -0.664 5.664 11 C 0.137 3.863 12 H 0.097 0.903 13 C 0.123 3.877 14 N -0.598 5.598 15 C -0.227 4.227 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.280 1.280 22 H -0.290 1.290 23 C 0.142 3.858 24 C 0.066 3.934 25 H 0.068 0.932 26 O -0.562 6.562 27 N -0.467 5.467 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.181 0.819 32 H 0.186 0.814 33 H 0.418 0.582 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.287 -4.366 -8.033 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.205 6.205 3 C 0.091 3.909 4 C -0.105 4.105 5 N -0.121 5.121 6 C -0.098 4.098 7 C -0.055 4.055 8 C 0.353 3.647 9 O -0.416 6.416 10 N -0.312 5.312 11 C 0.031 3.969 12 H 0.115 0.885 13 C -0.004 4.004 14 N -0.326 5.326 15 C -0.355 4.355 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.217 1.217 21 H -0.206 1.206 22 H -0.216 1.216 23 C 0.017 3.983 24 C 0.006 3.994 25 H 0.086 0.914 26 O -0.367 6.367 27 N -0.200 5.200 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.198 0.802 32 H 0.203 0.797 33 H 0.255 0.745 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 10.186 -3.910 -7.803 13.414 hybrid contribution -1.722 -0.624 0.881 2.032 sum 8.464 -4.535 -6.922 11.837 Atomic orbital electron populations 1.23053 0.75937 1.03684 1.03541 1.86250 1.23881 1.23064 1.87267 1.20983 0.91010 0.85530 0.93336 1.23179 0.89679 0.97802 0.99843 1.68604 1.38030 0.97667 1.07769 1.23613 0.90682 0.98536 0.96960 1.22041 0.93429 0.91601 0.98387 1.17580 0.82666 0.86720 0.77768 1.90775 1.71464 1.27859 1.51546 1.45403 1.04638 1.11057 1.70136 1.22352 0.89989 0.86909 0.97679 0.88505 1.22082 0.91413 0.94661 0.92264 1.44309 1.27940 1.58032 1.02312 1.19057 1.13434 1.20831 0.82170 0.90355 1.24781 0.99421 0.98487 0.97592 1.69911 1.28323 1.30157 1.28467 0.86108 0.78142 0.77981 0.83587 1.21667 1.20586 1.21598 1.21961 0.93432 1.00113 0.82789 1.23507 0.95674 0.91898 0.88353 0.91405 1.86418 1.34610 1.64214 1.51424 1.68040 1.39984 0.98107 1.13878 0.91309 0.91700 0.88036 0.80208 0.79719 0.74535 0.94621 0.93135 0.93756 0.90746 0.94830 0.77528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.39 101.05 1.05 1.42 16 2 O -0.30 -3.67 10.49 -18.69 -0.20 -3.86 16 3 C 0.28 3.67 7.50 -16.94 -0.13 3.54 16 4 C 0.06 0.69 11.18 -17.03 -0.19 0.50 16 5 N -0.41 -5.22 10.48 -12.58 -0.13 -5.35 16 6 C 0.06 0.82 10.76 -17.02 -0.18 0.64 16 7 C 0.09 1.33 6.75 -82.86 -0.56 0.77 16 8 C 0.57 10.00 7.81 -12.20 -0.10 9.91 16 9 O -0.54 -10.18 15.98 5.35 0.09 -10.10 16 10 N -0.66 -12.02 4.81 -52.46 -0.25 -12.27 16 11 C 0.14 2.48 3.31 -65.66 -0.22 2.27 16 12 H 0.10 1.67 7.54 -51.93 -0.39 1.28 16 13 C 0.12 2.52 6.95 -2.41 -0.02 2.50 16 14 N -0.60 -14.47 3.39 -169.93 -0.58 -15.04 16 15 C -0.23 -6.10 10.26 -15.06 -0.15 -6.25 16 16 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 17 C -0.01 -0.18 5.45 -17.43 -0.09 -0.27 16 18 N -0.92 -25.52 10.46 55.49 0.58 -24.94 16 19 Si 0.91 21.52 29.56 -169.99 -5.02 16.49 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.14 3.15 5.21 -3.06 -0.02 3.13 16 24 C 0.07 1.15 4.12 -24.90 -0.10 1.05 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 O -0.56 -8.91 12.67 -35.23 -0.45 -9.36 16 27 N -0.47 -7.12 8.60 -9.69 -0.08 -7.20 16 28 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 29 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.18 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.19 2.27 7.64 -52.49 -0.40 1.86 16 33 H 0.42 7.88 7.74 -40.82 -0.32 7.57 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.07 1.84 6.80 -51.93 -0.35 1.49 16 38 H 0.03 0.81 7.98 -51.93 -0.41 0.40 16 39 H 0.38 4.57 9.11 45.56 0.42 4.99 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -31.18 337.23 -5.63 -36.82 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -3.96 Total: 10.51 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: -0.71 Total: 19.21 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -0.46 Total: -64.80 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.56 Total: -23.32 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.18 -5.63 -36.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083836083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.351 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds