Wall clock time and date at job start Fri Apr 10 2020 17:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35664 * 116.99882 * 2 1 4 4 C 1.39496 * 120.01157 * 180.02562 * 3 2 1 5 5 N 1.31944 * 120.11723 * 180.02562 * 4 3 2 6 6 C 1.32195 * 120.14525 * 359.97157 * 5 4 3 7 7 C 1.39249 * 120.01699 * 359.97438 * 6 5 4 8 8 C 1.48130 * 120.05370 * 179.97438 * 7 6 5 9 9 O 1.21517 * 119.99906 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99489 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99557 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.88733 * 31.12319 * 11 10 8 13 13 C 1.55128 * 111.22250 * 267.21100 * 11 10 8 14 14 N 1.47424 * 104.72471 * 279.17340 * 13 11 10 15 15 C 1.36932 * 125.65028 * 155.81447 * 14 13 11 16 16 H 1.07997 * 119.99909 * 5.54497 * 15 14 13 17 17 C 1.38811 * 120.00206 * 185.54005 * 15 14 13 18 18 N 1.31624 * 119.99806 * 7.32256 * 17 15 14 19 19 Si 1.86804 * 120.00278 * 187.04744 * 17 15 14 20 20 H 1.48497 * 109.46911 * 265.29137 * 19 17 15 21 21 H 1.48506 * 109.46754 * 25.29225 * 19 17 15 22 22 H 1.48498 * 109.47070 * 145.28729 * 19 17 15 23 23 C 1.47026 * 108.70346 * 335.55946 * 14 13 11 24 24 C 1.54325 * 107.26784 * 1.28362 * 23 14 13 25 25 H 1.09002 * 110.71993 * 263.82671 * 24 23 14 26 26 O 1.42895 * 110.72067 * 140.55772 * 24 23 14 27 27 N 1.32163 * 120.01549 * 0.22535 * 3 2 1 28 28 H 1.09004 * 109.47287 * 300.00433 * 1 2 3 29 29 H 1.08998 * 109.47486 * 59.99876 * 1 2 3 30 30 H 1.09004 * 109.47625 * 180.02562 * 1 2 3 31 31 H 1.08008 * 119.94140 * 0.02562 * 4 3 2 32 32 H 1.07992 * 119.99285 * 179.97438 * 6 5 4 33 33 H 0.96997 * 120.00428 * 0.02562 * 10 8 7 34 34 H 1.09005 * 110.49595 * 160.33653 * 13 11 10 35 35 H 1.08997 * 110.34690 * 37.94047 * 13 11 10 36 36 H 0.97000 * 120.00110 * 179.71821 * 18 17 15 37 37 H 1.09006 * 109.88495 * 120.69700 * 23 14 13 38 38 H 1.08997 * 109.88227 * 241.86926 * 23 14 13 39 39 H 0.96700 * 114.00676 * 61.45304 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4378 1.2821 -0.0005 5 7 4.0390 2.4566 0.0000 6 6 3.3238 3.5684 0.0004 7 6 1.9329 3.5020 -0.0002 8 6 1.1308 4.7474 0.0009 9 8 1.6865 5.8280 0.0019 10 7 -0.2154 4.6817 -0.0002 11 6 -1.0088 5.9134 0.0003 12 1 -0.4859 6.7126 -0.5249 13 6 -1.3731 6.3460 1.4448 14 7 -2.5317 5.5089 1.8057 15 6 -2.9144 5.1821 3.0792 16 1 -2.4038 5.6181 3.9251 17 6 -3.9586 4.2905 3.2830 18 7 -4.4856 3.6496 2.2612 19 14 -4.6109 3.9944 5.0082 20 1 -3.9421 2.8044 5.5928 21 1 -4.3329 5.1836 5.8533 22 1 -6.0761 3.7602 4.9500 23 6 -3.2119 5.0881 0.5721 24 6 -2.4131 5.6705 -0.6130 25 1 -2.8536 6.6084 -0.9512 26 8 -2.3404 4.7288 -1.6853 27 7 1.3253 2.3174 0.0045 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 4.0254 0.3758 -0.0014 32 1 3.8184 4.5285 0.0013 33 1 -0.6589 3.8191 -0.0013 34 1 -1.6451 7.4013 1.4700 35 1 -0.5398 6.1520 2.1201 36 1 -5.2125 3.0235 2.4040 37 1 -3.2270 3.9999 0.5097 38 1 -4.2302 5.4764 0.5592 39 1 -3.2007 4.4838 -2.0527 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083836083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:52 Heat of formation + Delta-G solvation = -59.786654 kcal Electronic energy + Delta-G solvation = -25941.651683 eV Core-core repulsion = 22078.254732 eV Total energy + Delta-G solvation = -3863.396951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.58559 -40.96931 -39.63352 -39.08719 -36.63420 -35.69626 -35.08755 -33.49146 -32.31395 -30.30513 -28.96018 -28.59842 -26.79412 -26.04415 -24.85172 -22.84188 -22.16793 -21.32394 -19.89515 -19.43634 -18.93194 -18.12330 -17.90933 -17.70886 -17.44793 -17.29015 -16.56441 -16.20233 -15.84757 -15.72299 -15.48707 -15.00855 -14.93131 -14.38878 -14.11010 -14.01631 -13.73767 -13.25175 -13.18039 -13.10703 -12.79038 -12.76329 -12.64973 -12.50958 -12.10254 -12.04705 -11.91567 -11.82473 -11.61351 -10.88019 -10.77267 -10.45473 -10.19003 -9.89602 -8.90206 -7.86346 -5.24034 -0.78755 -0.11789 1.44481 1.45352 1.54249 1.54802 1.77649 1.89318 2.45956 2.57776 2.69054 3.07770 3.16411 3.28184 3.32033 3.56624 3.76619 3.86025 3.94493 3.99070 4.31193 4.33964 4.36163 4.38660 4.54862 4.61537 4.72412 4.80033 4.87343 4.92296 5.32650 5.40344 5.49966 5.70272 5.80459 5.88206 6.16334 6.32463 6.52437 6.84385 6.99658 7.06592 7.71397 8.34571 9.20736 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.004816 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.559474 B = 5812.041847 C = 6653.039194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.295 6.295 3 C 0.265 3.735 4 C 0.084 3.916 5 N -0.412 5.412 6 C 0.068 3.932 7 C 0.061 3.939 8 C 0.570 3.430 9 O -0.556 6.556 10 N -0.669 5.669 11 C 0.141 3.859 12 H 0.113 0.887 13 C 0.122 3.878 14 N -0.616 5.616 15 C -0.243 4.243 16 H 0.075 0.925 17 C -0.055 4.055 18 N -0.941 5.941 19 Si 0.971 3.029 20 H -0.290 1.290 21 H -0.273 1.273 22 H -0.291 1.291 23 C 0.154 3.846 24 C 0.087 3.913 25 H 0.095 0.905 26 O -0.563 6.563 27 N -0.486 5.486 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.133 0.867 31 H 0.221 0.779 32 H 0.196 0.804 33 H 0.412 0.588 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.248 0.752 37 H 0.043 0.957 38 H 0.008 0.992 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.438 -4.982 -8.540 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.200 6.200 3 C 0.079 3.921 4 C -0.082 4.082 5 N -0.125 5.125 6 C -0.089 4.089 7 C -0.078 4.078 8 C 0.355 3.645 9 O -0.435 6.435 10 N -0.317 5.317 11 C 0.035 3.965 12 H 0.131 0.869 13 C -0.004 4.004 14 N -0.343 5.343 15 C -0.371 4.371 16 H 0.093 0.907 17 C -0.249 4.249 18 N -0.589 5.589 19 Si 0.800 3.200 20 H -0.217 1.217 21 H -0.198 1.198 22 H -0.217 1.217 23 C 0.028 3.972 24 C 0.027 3.973 25 H 0.113 0.887 26 O -0.370 6.370 27 N -0.219 5.219 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.238 0.762 32 H 0.213 0.787 33 H 0.249 0.751 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 11.349 -4.492 -8.328 14.776 hybrid contribution -2.024 -0.527 1.028 2.331 sum 9.324 -5.019 -7.299 12.861 Atomic orbital electron populations 1.23127 0.75539 1.05303 1.02128 1.86264 1.24185 1.22397 1.87150 1.21314 0.91825 0.85316 0.93601 1.23852 0.89207 0.98671 0.96433 1.68731 1.37683 0.97816 1.08315 1.23753 0.89938 0.99426 0.95772 1.21766 0.93806 0.90969 1.01272 1.17869 0.82453 0.87369 0.76838 1.90748 1.71674 1.28747 1.52369 1.45437 1.05010 1.10681 1.70533 1.22303 0.90563 0.87480 0.96117 0.86932 1.22193 0.89771 0.94901 0.93571 1.44511 1.29195 1.58458 1.02160 1.19332 1.13539 1.20759 0.83517 0.90685 1.25496 0.99888 0.98665 1.00871 1.70097 1.28454 1.30509 1.29886 0.85177 0.77137 0.77807 0.79881 1.21677 1.19796 1.21740 1.21746 0.92941 0.98332 0.84171 1.23237 0.94292 0.92790 0.86987 0.88689 1.86391 1.36205 1.63979 1.50439 1.67917 1.41032 0.98628 1.14365 0.93600 0.92206 0.84917 0.76225 0.78746 0.75147 0.93038 0.94615 0.94266 0.93871 0.97416 0.75457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.39 113.37 1.18 1.92 16 2 O -0.30 -6.73 10.49 -89.80 -0.94 -7.67 16 3 C 0.27 6.66 7.50 84.95 0.64 7.30 16 4 C 0.08 1.71 11.18 84.98 0.95 2.66 16 5 N -0.41 -9.64 10.48 -193.71 -2.03 -11.67 16 6 C 0.07 1.78 10.76 84.88 0.91 2.69 16 7 C 0.06 1.86 6.75 41.82 0.28 2.14 16 8 C 0.57 19.99 7.81 86.87 0.68 20.67 16 9 O -0.56 -20.83 15.98 -3.77 -0.06 -20.89 16 10 N -0.67 -24.25 4.81 -438.19 -2.11 -26.36 16 11 C 0.14 5.03 3.31 46.46 0.15 5.19 16 12 H 0.11 3.71 7.54 -2.39 -0.02 3.69 16 13 C 0.12 4.99 6.95 86.93 0.60 5.60 16 14 N -0.62 -30.22 3.39 -691.54 -2.35 -32.57 16 15 C -0.24 -13.26 10.26 84.03 0.86 -12.40 16 16 H 0.08 4.03 7.84 -2.91 -0.02 4.01 16 17 C -0.06 -3.03 5.45 84.86 0.46 -2.57 16 18 N -0.94 -53.31 10.46 21.65 0.23 -53.08 16 19 Si 0.97 44.69 29.56 68.60 2.03 46.71 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 C 0.15 6.90 5.21 86.73 0.45 7.36 16 24 C 0.09 2.96 4.12 31.78 0.13 3.09 16 25 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 26 O -0.56 -17.14 12.67 -148.98 -1.89 -19.03 16 27 N -0.49 -14.66 8.60 -297.48 -2.56 -17.22 16 28 H 0.05 1.21 8.11 -2.38 -0.02 1.19 16 29 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 30 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.22 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.20 4.57 7.64 -2.91 -0.02 4.55 16 33 H 0.41 15.84 7.74 -92.71 -0.72 15.13 16 34 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 37 H 0.04 2.21 6.80 -2.38 -0.02 2.19 16 38 H 0.01 0.38 7.98 -2.39 -0.02 0.36 16 39 H 0.40 9.01 9.11 -74.06 -0.67 8.34 16 Total: -1.00 -67.60 337.23 -2.65 -70.25 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.28 Total: 27.90 kcal Atomic # 6 Polarization: 36.33 SS G_CDS: 7.30 Total: 43.63 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -8.82 Total: -140.90 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -2.89 Total: -47.60 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -67.60 -2.65 -70.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083836083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.461 kcal (2) G-P(sol) polarization free energy of solvation -67.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds