Wall clock time and date at job start Fri Apr 10 2020 18:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37863 * 120.06283 * 2 1 4 4 C 1.38625 * 120.12204 * 180.02562 * 3 2 1 5 5 F 1.35103 * 119.88379 * 180.02562 * 4 3 2 6 6 C 1.38684 * 120.23817 * 359.97438 * 4 3 2 7 7 C 1.37809 * 120.11711 * 0.02607 * 6 4 3 8 8 C 1.39627 * 120.06227 * 180.02562 * 2 1 3 9 9 C 1.47732 * 120.11573 * 0.25382 * 8 2 1 10 10 O 1.21569 * 119.99865 * 353.81211 * 9 8 2 11 11 N 1.34777 * 119.99823 * 173.80867 * 9 8 2 12 12 C 1.46498 * 119.99694 * 179.97438 * 11 9 8 13 13 H 1.09007 * 110.64268 * 34.30544 * 12 11 9 14 14 C 1.54322 * 110.72463 * 271.16228 * 12 11 9 15 15 N 1.47023 * 107.27075 * 219.44616 * 14 12 11 16 16 C 1.36939 * 125.64770 * 178.90039 * 15 14 12 17 17 H 1.07997 * 119.99885 * 339.18167 * 16 15 14 18 18 C 1.38815 * 119.99774 * 159.17568 * 16 15 14 19 19 N 1.31618 * 119.99857 * 159.62726 * 18 16 15 20 20 Si 1.86801 * 120.00127 * 339.62518 * 18 16 15 21 21 H 1.48508 * 109.46916 * 84.70894 * 20 18 16 22 22 H 1.48503 * 109.46868 * 204.70522 * 20 18 16 23 23 H 1.48498 * 109.47128 * 324.70702 * 20 18 16 24 24 C 1.47425 * 108.70524 * 358.93573 * 15 14 12 25 25 C 1.55132 * 104.94052 * 24.00577 * 24 15 14 26 26 H 1.08993 * 111.15830 * 205.12628 * 25 24 15 27 27 O 1.42905 * 110.93347 * 81.21423 * 25 24 15 28 28 H 1.08996 * 109.46910 * 265.20678 * 1 2 3 29 29 H 1.08997 * 109.46840 * 25.20498 * 1 2 3 30 30 H 1.09003 * 109.46976 * 145.20746 * 1 2 3 31 31 H 1.07997 * 119.93563 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.94236 * 180.02562 * 6 4 3 33 33 H 1.08003 * 120.05705 * 179.97438 * 7 6 4 34 34 H 0.96995 * 120.00495 * 359.97438 * 11 9 8 35 35 H 1.09007 * 109.87935 * 338.85545 * 14 12 11 36 36 H 1.08994 * 109.88334 * 99.87437 * 14 12 11 37 37 H 0.97001 * 120.00098 * 180.02562 * 19 18 16 38 38 H 1.09002 * 110.36819 * 142.96684 * 24 15 14 39 39 H 1.08997 * 110.36798 * 265.18266 * 24 15 14 40 40 H 0.96702 * 113.99888 * 67.96168 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1932 0.0000 4 6 3.5839 1.1946 -0.0005 5 9 4.2558 2.3667 0.0000 6 6 4.2835 -0.0028 -0.0005 7 6 3.6031 -1.2012 -0.0006 8 6 2.2065 -1.2084 -0.0005 9 6 1.4718 -2.4901 -0.0068 10 8 0.2610 -2.4972 0.1020 11 7 2.1439 -3.6515 -0.1332 12 6 1.4154 -4.9225 -0.1388 13 1 0.4454 -4.8073 -0.6226 14 6 1.2486 -5.4627 1.2971 15 7 1.4405 -6.9192 1.2405 16 6 1.3946 -7.7725 2.3107 17 1 1.5415 -7.3925 3.3109 18 6 1.1590 -9.1256 2.1098 19 7 1.5010 -9.9975 3.0345 20 14 0.3567 -9.7092 0.5270 21 1 1.3943 -9.8731 -0.5227 22 1 -0.3173 -11.0110 0.7644 23 1 -0.6447 -8.7074 0.0810 24 6 1.6915 -7.3090 -0.1589 25 6 2.2487 -6.0297 -0.8367 26 1 2.0626 -6.0405 -1.9106 27 8 3.6422 -5.8719 -0.5619 28 1 -0.3633 -0.0859 1.0240 29 1 -0.3633 0.9298 -0.4376 30 1 -0.3633 -0.8440 -0.5864 31 1 1.6576 2.1284 0.0004 32 1 5.3635 0.0039 -0.0005 33 1 4.1490 -2.1332 -0.0010 34 1 3.1099 -3.6458 -0.2204 35 1 1.9975 -5.0153 1.9508 36 1 0.2493 -5.2322 1.6662 37 1 1.3367 -10.9431 2.8940 38 1 2.4259 -8.1133 -0.2029 39 1 0.7629 -7.6176 -0.6391 40 1 4.2032 -6.5413 -0.9771 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083974598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:03 Heat of formation + Delta-G solvation = -91.242216 kcal Electronic energy + Delta-G solvation = -25271.415434 eV Core-core repulsion = 21386.734506 eV Total energy + Delta-G solvation = -3884.680928 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.01321 -41.58118 -40.14516 -38.90976 -36.50727 -35.70957 -34.08699 -33.51760 -32.14293 -30.46794 -29.30773 -28.14359 -26.23365 -24.67585 -23.08226 -22.83090 -21.87823 -21.33782 -19.45297 -18.69920 -18.39149 -18.18849 -17.58348 -17.37171 -16.76007 -16.63396 -16.30082 -16.05530 -15.61517 -15.58648 -14.99825 -14.68737 -14.58231 -14.40569 -14.29481 -14.12736 -14.10347 -13.81577 -13.28702 -13.12379 -13.02585 -12.79864 -12.72959 -12.64559 -12.16225 -12.10052 -12.02469 -11.57773 -11.09700 -10.76002 -10.73554 -10.18435 -10.02953 -9.71303 -9.05804 -8.19811 -5.50267 -0.38665 0.15757 1.27268 1.40468 1.48931 1.68220 1.99900 2.39168 2.62030 3.00621 3.07825 3.13181 3.30162 3.60662 3.63776 3.66821 3.77253 3.79136 4.07418 4.12585 4.21834 4.28825 4.56757 4.61687 4.70814 4.72942 4.76675 4.80692 4.81692 4.92291 4.98350 5.02841 5.06478 5.21086 5.39854 5.53132 5.64512 5.75758 6.07079 6.52937 6.70373 6.87726 7.18489 7.48711 8.03665 9.00424 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.027897 B = 0.003188 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.466156 B = 8780.722456 C = 9087.671866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.004 4.004 3 C -0.166 4.166 4 C 0.121 3.879 5 F -0.138 7.138 6 C -0.164 4.164 7 C -0.045 4.045 8 C -0.164 4.164 9 C 0.554 3.446 10 O -0.562 6.562 11 N -0.694 5.694 12 C 0.152 3.848 13 H 0.109 0.891 14 C 0.129 3.871 15 N -0.617 5.617 16 C -0.239 4.239 17 H 0.049 0.951 18 C -0.037 4.037 19 N -0.958 5.958 20 Si 0.954 3.046 21 H -0.256 1.256 22 H -0.309 1.309 23 H -0.269 1.269 24 C 0.071 3.929 25 C 0.106 3.894 26 H 0.116 0.884 27 O -0.561 6.561 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.418 0.582 35 H 0.026 0.974 36 H 0.019 0.981 37 H 0.264 0.736 38 H 0.059 0.941 39 H 0.038 0.962 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 21.443 -14.112 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.005 4.005 3 C -0.184 4.184 4 C 0.102 3.898 5 F -0.116 7.116 6 C -0.182 4.182 7 C -0.064 4.064 8 C -0.168 4.168 9 C 0.344 3.656 10 O -0.443 6.443 11 N -0.346 5.346 12 C 0.046 3.954 13 H 0.127 0.873 14 C 0.003 3.997 15 N -0.344 5.344 16 C -0.368 4.368 17 H 0.066 0.934 18 C -0.231 4.231 19 N -0.605 5.605 20 Si 0.781 3.219 21 H -0.181 1.181 22 H -0.237 1.237 23 H -0.194 1.194 24 C -0.054 4.054 25 C 0.046 3.954 26 H 0.133 0.867 27 O -0.369 6.369 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.178 0.822 32 H 0.184 0.816 33 H 0.175 0.825 34 H 0.257 0.743 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 4.928 21.776 -13.587 26.136 hybrid contribution 0.149 -1.134 -0.058 1.146 sum 5.077 20.642 -13.646 25.260 Atomic orbital electron populations 1.21107 0.89303 1.04012 1.03435 1.19985 0.97406 0.90784 0.92328 1.21165 0.92287 0.99580 1.05405 1.18100 0.90370 0.81512 0.99866 1.91520 1.80495 1.46127 1.93496 1.21315 1.02435 0.90130 1.04347 1.21393 0.91977 0.99349 0.93685 1.19830 0.94454 0.92518 1.09950 1.18550 0.86959 0.84331 0.75802 1.90725 1.14994 1.87470 1.51063 1.45571 1.11815 1.03983 1.73251 1.21898 0.96234 0.82415 0.94871 0.87288 1.21731 0.97567 0.84032 0.96411 1.44589 1.83571 1.02844 1.03438 1.18512 1.42421 0.89011 0.86855 0.93353 1.25754 1.00584 0.95566 1.01205 1.69959 1.50561 1.01984 1.37978 0.85846 0.79793 0.76004 0.80221 1.18123 1.23735 1.19397 1.22953 0.98660 0.98349 0.85477 1.23112 0.82139 0.91720 0.98459 0.86678 1.86263 1.15827 1.56573 1.78278 0.91004 0.89841 0.89872 0.82248 0.81647 0.82514 0.74305 0.95551 0.96336 0.92697 0.92280 0.94504 0.74783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 8.81 71.24 0.63 -1.88 16 2 C 0.00 -0.08 5.91 -19.62 -0.12 -0.19 16 3 C -0.17 -2.77 9.64 22.27 0.21 -2.56 16 4 C 0.12 2.02 7.31 22.47 0.16 2.18 16 5 F -0.14 -2.39 17.26 44.97 0.78 -1.62 16 6 C -0.16 -2.39 10.01 22.27 0.22 -2.17 16 7 C -0.05 -0.75 9.52 22.51 0.21 -0.53 16 8 C -0.16 -3.59 5.87 -20.09 -0.12 -3.71 16 9 C 0.55 15.16 7.70 86.75 0.67 15.83 16 10 O -0.56 -18.78 12.98 -3.93 -0.05 -18.83 16 11 N -0.69 -17.82 5.03 -439.88 -2.21 -20.03 16 12 C 0.15 4.71 3.15 46.18 0.15 4.86 16 13 H 0.11 3.39 7.62 -2.38 -0.02 3.37 16 14 C 0.13 5.37 7.00 86.73 0.61 5.98 16 15 N -0.62 -29.75 3.18 -691.54 -2.20 -31.95 16 16 C -0.24 -14.10 10.58 84.03 0.89 -13.21 16 17 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 18 C -0.04 -2.16 5.45 84.86 0.46 -1.70 16 19 N -0.96 -60.76 13.97 21.65 0.30 -60.46 16 20 Si 0.95 45.68 24.27 68.60 1.66 47.34 16 21 H -0.26 -10.92 6.57 99.48 0.65 -10.26 16 22 H -0.31 -15.09 7.11 99.48 0.71 -14.39 16 23 H -0.27 -12.47 6.59 99.48 0.66 -11.81 16 24 C 0.07 2.72 4.44 86.93 0.39 3.10 16 25 C 0.11 2.88 4.31 32.06 0.14 3.02 16 26 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 27 O -0.56 -13.58 12.23 -148.98 -1.82 -15.40 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.24 8.05 -2.39 -0.02 1.22 16 30 H 0.08 2.09 5.69 -2.39 -0.01 2.07 16 31 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.16 1.96 6.45 -2.91 -0.02 1.95 16 34 H 0.42 8.88 5.64 -92.71 -0.52 8.36 16 35 H 0.03 1.15 8.03 -2.38 -0.02 1.13 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 38 H 0.06 2.36 6.78 -2.39 -0.02 2.34 16 39 H 0.04 1.44 5.44 -2.39 -0.01 1.42 16 40 H 0.40 6.51 9.12 -74.06 -0.68 5.84 16 Total: -1.00 -75.24 328.63 0.76 -74.47 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.20 Total: 17.46 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 4.51 Total: 9.01 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.11 Total: -112.45 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.87 Total: -34.23 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.62 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.66 Total: 47.34 kcal Total: -75.24 0.76 -74.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083974598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.769 kcal (2) G-P(sol) polarization free energy of solvation -75.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds