Wall clock time and date at job start Fri Apr 10 2020 17:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00078 * 2 1 4 4 H 1.08996 * 110.63804 * 26.85563 * 3 2 1 5 5 C 1.54327 * 110.86901 * 263.61029 * 3 2 1 6 6 N 1.47024 * 107.26774 * 219.37128 * 5 3 2 7 7 C 1.36941 * 125.64618 * 179.20447 * 6 5 3 8 8 H 1.08005 * 119.99780 * 179.68989 * 7 6 5 9 9 C 1.38813 * 119.99913 * 359.69358 * 7 6 5 10 10 N 1.31616 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99719 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47311 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47271 * 120.00121 * 11 9 7 14 14 H 1.48501 * 109.46665 * 239.99715 * 11 9 7 15 15 C 1.47426 * 108.70449 * 358.94057 * 6 5 3 16 16 C 1.54912 * 104.83261 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00012 * 81.06132 * 16 15 6 18 18 N 1.46497 * 111.00243 * 204.87751 * 16 15 6 19 19 C 1.34773 * 120.00133 * 273.54537 * 18 16 15 20 20 O 1.21692 * 119.99873 * 359.97438 * 19 18 16 21 21 C 1.46654 * 119.99980 * 180.02562 * 19 18 16 22 22 C 1.36547 * 125.98657 * 179.97438 * 21 19 18 23 23 C 1.40363 * 106.70835 * 179.97438 * 22 21 19 24 24 C 1.50698 * 126.44329 * 180.02562 * 23 22 21 25 25 C 1.35140 * 107.11586 * 0.02562 * 23 22 21 26 26 C 1.50696 * 125.61515 * 180.02562 * 25 23 22 27 27 O 1.33933 * 108.76362 * 359.75148 * 25 23 22 28 28 H 1.09000 * 109.46708 * 60.00384 * 1 2 3 29 29 H 1.08994 * 109.46840 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47089 * 300.00153 * 1 2 3 31 31 H 1.08995 * 109.88184 * 99.95552 * 5 3 2 32 32 H 1.09002 * 109.88385 * 338.78559 * 5 3 2 33 33 H 0.97001 * 119.99407 * 180.02562 * 10 9 7 34 34 H 1.09002 * 110.36518 * 142.96440 * 15 6 5 35 35 H 1.08997 * 110.36787 * 265.28818 * 15 6 5 36 36 H 0.97002 * 119.99825 * 93.54988 * 18 16 15 37 37 H 1.07996 * 126.64806 * 0.02562 * 22 21 19 38 38 H 1.09003 * 109.47360 * 90.03160 * 24 23 22 39 39 H 1.09002 * 109.47026 * 210.02484 * 24 23 22 40 40 H 1.08994 * 109.47457 * 330.02635 * 24 23 22 41 41 H 1.08991 * 109.47110 * 90.00392 * 26 25 23 42 42 H 1.09009 * 109.46644 * 210.00028 * 26 25 23 43 43 H 1.08997 * 109.47467 * 329.99574 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3805 1.7424 -1.4331 6 7 3.6669 2.4499 -1.3550 7 6 4.3496 2.9841 -2.4151 8 1 5.2891 3.4914 -2.2521 9 6 3.8341 2.8737 -3.6992 10 7 2.6894 2.2551 -3.8979 11 14 4.7657 3.6017 -5.1454 12 1 6.0157 4.2389 -4.6589 13 1 5.1018 2.5244 -6.1107 14 1 3.9197 4.6212 -5.8164 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9172 0.3655 0.5364 18 7 3.2173 1.5207 2.1639 19 6 4.2053 1.1831 3.0160 20 8 5.2339 0.6910 2.5908 21 6 4.0405 1.4078 4.4559 22 6 4.9571 1.1129 5.4240 23 6 4.3862 1.4917 6.6491 24 6 5.0199 1.3622 8.0102 25 6 3.1612 1.9942 6.3785 26 6 2.1865 2.5266 7.3970 27 8 2.9587 1.9466 5.0554 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6138 2.4096 -1.8269 32 1 2.4776 0.8664 -2.0743 33 1 2.3294 2.1776 -4.7953 34 1 5.1787 2.3788 0.1248 35 1 3.7842 3.4306 0.5171 36 1 2.3972 1.9125 2.5029 37 1 5.9328 0.6742 5.2759 38 1 5.5794 2.2695 8.2383 39 1 4.2428 1.2164 8.7604 40 1 5.6960 0.5073 8.0164 41 1 2.3586 3.5930 7.5418 42 1 1.1679 2.3676 7.0428 43 1 2.3278 2.0040 8.3431 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081537961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:07 Heat of formation + Delta-G solvation = -62.421706 kcal Electronic energy + Delta-G solvation = -25548.195332 eV Core-core repulsion = 21788.224461 eV Total energy + Delta-G solvation = -3759.970872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.77494 -41.06208 -39.62081 -37.55597 -35.90171 -35.30921 -33.76652 -32.95943 -30.70155 -29.64920 -29.06166 -27.60321 -27.25135 -25.94887 -23.61810 -22.40259 -22.14862 -21.95655 -20.71221 -19.33769 -18.71485 -18.03832 -17.58579 -17.28302 -16.70335 -16.54914 -15.95006 -15.85288 -15.81056 -15.39256 -15.07504 -14.65291 -14.54560 -14.20730 -14.08295 -13.99891 -13.66857 -13.64298 -13.59242 -13.27673 -13.01718 -12.93083 -12.79622 -12.63242 -12.44650 -12.35888 -12.05001 -11.89817 -11.71161 -11.55317 -10.80620 -10.76843 -10.65467 -10.29247 -9.38075 -8.99899 -7.89385 -5.27914 -0.04886 1.26724 1.44979 1.46965 1.49963 1.57644 2.00423 2.02498 2.44816 2.71881 3.30245 3.43231 3.51285 3.76373 3.79390 3.85845 3.88692 4.03825 4.27322 4.32736 4.39188 4.48021 4.55858 4.62311 4.69730 4.71843 4.75290 4.78238 4.85014 4.88067 4.91050 5.06477 5.08989 5.13570 5.22383 5.32312 5.38975 5.57823 5.62981 5.83760 6.10868 6.26449 6.34720 6.91738 7.02769 7.66678 8.29376 9.20493 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.003186 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.530775 B = 8785.730626 C = 9590.649605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.078 3.922 4 H 0.096 0.904 5 C 0.176 3.824 6 N -0.621 5.621 7 C -0.248 4.248 8 H 0.083 0.917 9 C -0.062 4.062 10 N -0.949 5.949 11 Si 0.983 3.017 12 H -0.267 1.267 13 H -0.292 1.292 14 H -0.287 1.287 15 C 0.132 3.868 16 C 0.149 3.851 17 H 0.081 0.919 18 N -0.691 5.691 19 C 0.603 3.397 20 O -0.559 6.559 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.204 4.204 24 C -0.080 4.080 25 C 0.022 3.978 26 C -0.077 4.077 27 O -0.168 6.168 28 H 0.038 0.962 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.025 0.975 32 H 0.021 0.979 33 H 0.249 0.751 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.416 0.584 37 H 0.158 0.842 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -0.169 26.278 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.019 3.981 4 H 0.114 0.886 5 C 0.050 3.950 6 N -0.349 5.349 7 C -0.376 4.376 8 H 0.101 0.899 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.811 3.189 12 H -0.191 1.191 13 H -0.219 1.219 14 H -0.214 1.214 15 C 0.005 3.995 16 C 0.043 3.957 17 H 0.099 0.901 18 N -0.342 5.342 19 C 0.391 3.609 20 O -0.439 6.439 21 C -0.154 4.154 22 C -0.138 4.138 23 C -0.206 4.206 24 C -0.136 4.136 25 C -0.030 4.030 26 C -0.133 4.133 27 O -0.065 6.065 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.253 0.747 37 H 0.176 0.824 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.604 -0.574 25.589 26.006 hybrid contribution 0.130 0.455 -1.429 1.505 sum -4.475 -0.119 24.160 24.571 Atomic orbital electron populations 1.23011 0.79167 1.04034 1.00818 1.87892 1.21915 1.26826 1.94933 1.23474 0.93288 0.85373 0.96007 0.88631 1.21292 0.87213 0.94851 0.91659 1.44525 1.22190 1.66196 1.01956 1.19493 1.03007 1.29245 0.85864 0.89886 1.25693 0.98484 1.01363 0.99964 1.70162 1.20760 1.48092 1.20674 0.84949 0.77936 0.77260 0.78781 1.19100 1.21860 1.21370 1.21906 0.97453 0.95410 0.84745 1.21957 0.96304 0.98786 0.78657 0.90131 1.45592 1.19522 1.63173 1.05889 1.16808 0.83238 0.77601 0.83252 1.90871 1.29332 1.46357 1.77343 1.21535 0.89794 1.11403 0.92651 1.22085 1.00225 1.00037 0.91498 1.20599 0.95549 1.06952 0.97466 1.20290 1.00909 1.02961 0.89444 1.23520 0.97724 1.00473 0.81303 1.20675 0.96069 1.02677 0.93878 1.83983 1.38152 1.63533 1.20784 0.94365 0.87965 0.91851 0.95685 0.96069 0.94123 0.94292 0.94226 0.74677 0.82436 0.90381 0.89170 0.91179 0.87990 0.89315 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.85 113.37 1.23 1.92 16 2 O -0.40 -14.74 10.44 -148.98 -1.56 -16.29 16 3 C 0.08 3.01 3.07 31.78 0.10 3.10 16 4 H 0.10 3.09 7.68 -2.39 -0.02 3.07 16 5 C 0.18 8.95 5.15 86.73 0.45 9.39 16 6 N -0.62 -33.48 3.39 -691.96 -2.35 -35.83 16 7 C -0.25 -14.40 10.28 84.03 0.86 -13.54 16 8 H 0.08 4.66 7.83 -2.91 -0.02 4.63 16 9 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 10 N -0.95 -57.66 10.31 21.65 0.22 -57.44 16 11 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 15 C 0.13 5.91 6.93 86.86 0.60 6.51 16 16 C 0.15 5.90 3.04 46.38 0.14 6.04 16 17 H 0.08 3.66 7.73 -2.39 -0.02 3.64 16 18 N -0.69 -22.12 5.23 -439.95 -2.30 -24.42 16 19 C 0.60 20.69 7.78 86.44 0.67 21.36 16 20 O -0.56 -23.38 16.61 -4.32 -0.07 -23.45 16 21 C -0.10 -2.89 7.13 24.07 0.17 -2.72 16 22 C -0.12 -2.94 10.57 22.39 0.24 -2.70 16 23 C -0.20 -3.76 6.14 -20.06 -0.12 -3.88 16 24 C -0.08 -0.84 10.17 71.24 0.72 -0.12 16 25 C 0.02 0.38 7.31 24.97 0.18 0.56 16 26 C -0.08 -0.56 10.21 71.23 0.73 0.17 16 27 O -0.17 -3.93 10.40 -5.07 -0.05 -3.98 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 2.29 8.14 -2.39 -0.02 2.28 16 30 H 0.06 1.34 8.11 -2.39 -0.02 1.33 16 31 H 0.03 1.37 7.51 -2.39 -0.02 1.36 16 32 H 0.02 1.24 7.30 -2.39 -0.02 1.22 16 33 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.42 10.71 8.27 -92.71 -0.77 9.94 16 37 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 0.52 7.13 -2.39 -0.02 0.51 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.12 0.30 7.13 -2.39 -0.02 0.28 16 Total: -1.00 -76.58 361.54 2.62 -73.96 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.26 Total: 15.74 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 6.44 Total: 22.98 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -4.43 Total: -117.69 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.68 Total: -43.72 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -76.58 2.62 -73.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081537961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.539 kcal (2) G-P(sol) polarization free energy of solvation -76.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds