Wall clock time and date at job start Fri Apr 10 2020 17:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00313 * 2 1 4 4 H 1.09004 * 110.63525 * 26.86212 * 3 2 1 5 5 C 1.54336 * 110.84993 * 263.69702 * 3 2 1 6 6 N 1.47021 * 107.26378 * 219.67069 * 5 3 2 7 7 C 1.36930 * 125.64701 * 178.85098 * 6 5 3 8 8 H 1.08001 * 120.00119 * 189.75453 * 7 6 5 9 9 C 1.38810 * 119.99961 * 9.75277 * 7 6 5 10 10 N 1.31631 * 119.99846 * 195.14253 * 9 7 6 11 11 Si 1.86798 * 120.00326 * 15.13878 * 9 7 6 12 12 H 1.48505 * 109.47267 * 174.49184 * 11 9 7 13 13 H 1.48507 * 109.46844 * 54.49250 * 11 9 7 14 14 H 1.48496 * 109.47237 * 294.49670 * 11 9 7 15 15 C 1.47425 * 108.70462 * 358.58474 * 6 5 3 16 16 C 1.54912 * 104.83156 * 24.35748 * 15 6 5 17 17 H 1.08997 * 111.00807 * 81.06150 * 16 15 6 18 18 N 1.46497 * 111.00379 * 204.91948 * 16 15 6 19 19 C 1.34785 * 119.99606 * 273.54230 * 18 16 15 20 20 O 1.21276 * 119.99934 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99740 * 180.02562 * 19 18 16 22 22 C 1.50698 * 109.46927 * 180.02562 * 21 19 18 23 23 C 1.34519 * 125.79016 * 89.99838 * 22 21 19 24 24 C 1.41378 * 106.84122 * 179.97438 * 23 22 21 25 25 C 1.34514 * 106.84289 * 0.02562 * 24 23 22 26 26 C 1.50701 * 125.79249 * 179.97438 * 25 24 23 27 27 O 1.34300 * 125.79355 * 269.69282 * 22 21 19 28 28 H 1.08995 * 109.47526 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46922 * 299.99711 * 1 2 3 30 30 H 1.09002 * 109.47445 * 59.99457 * 1 2 3 31 31 H 1.09008 * 109.99015 * 100.19468 * 5 3 2 32 32 H 1.08998 * 109.77984 * 339.02594 * 5 3 2 33 33 H 0.96996 * 119.99667 * 2.97181 * 10 9 7 34 34 H 1.08997 * 110.36537 * 143.19228 * 15 6 5 35 35 H 1.09001 * 110.36586 * 265.40897 * 15 6 5 36 36 H 0.97002 * 120.00823 * 93.54760 * 18 16 15 37 37 H 1.09001 * 109.47114 * 299.99504 * 21 19 18 38 38 H 1.09000 * 109.47365 * 60.00070 * 21 19 18 39 39 H 1.07999 * 126.57633 * 359.96239 * 23 22 21 40 40 H 1.08004 * 126.57886 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.46546 * 89.99503 * 26 25 24 42 42 H 1.08993 * 109.47330 * 209.99949 * 26 25 24 43 43 H 1.09002 * 109.46924 * 330.00326 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3784 1.7428 -1.4336 6 7 3.6685 2.4439 -1.3582 7 6 4.3539 2.9704 -2.4202 8 1 5.3647 3.3270 -2.2874 9 6 3.7497 3.0457 -3.6676 10 7 4.4801 3.2647 -4.7406 11 14 1.9001 2.8363 -3.8238 12 1 1.4898 3.0908 -5.2281 13 1 1.2152 3.8004 -2.9255 14 1 1.5248 1.4513 -3.4417 15 6 4.0989 2.4917 0.0511 16 6 3.3817 1.2957 0.7256 17 1 3.9158 0.3641 0.5389 18 7 3.2169 1.5251 2.1630 19 6 4.2043 1.1888 3.0167 20 8 5.2289 0.6960 2.5947 21 6 4.0345 1.4242 4.4954 22 6 5.2724 0.9658 5.2224 23 6 6.3513 1.7223 5.4930 24 6 7.2674 0.8968 6.1844 25 6 6.6939 -0.3149 6.2945 26 6 7.3037 -1.5215 6.9604 27 8 5.4833 -0.2656 5.7151 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6143 2.4138 -1.8263 32 1 2.4699 0.8661 -2.0747 33 1 5.4449 3.3305 -4.6653 34 1 5.1802 2.3744 0.1216 35 1 3.7890 3.4303 0.5107 36 1 2.3972 1.9189 2.5006 37 1 3.8788 2.4874 4.6786 38 1 3.1723 0.8633 4.8560 39 1 6.4909 2.7610 5.2320 40 1 8.2413 1.1838 6.5527 41 1 7.0294 -1.5316 8.0153 42 1 6.9340 -2.4273 6.4801 43 1 8.3889 -1.4780 6.8676 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081555191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:10 Heat of formation + Delta-G solvation = -24.847246 kcal Electronic energy + Delta-G solvation = -25518.221834 eV Core-core repulsion = 21759.880313 eV Total energy + Delta-G solvation = -3758.341521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.67811 -39.90293 -38.47795 -36.25472 -34.25401 -33.27921 -33.15061 -32.05852 -30.32246 -28.98212 -27.91404 -26.37542 -25.29679 -23.66436 -21.92020 -21.24715 -20.99680 -20.25171 -20.06250 -17.84899 -17.23834 -17.00845 -16.54883 -16.19320 -15.93042 -15.34012 -15.06539 -14.71847 -14.40030 -14.29311 -13.87790 -13.52194 -13.45908 -13.24714 -13.11829 -12.90549 -12.89140 -12.71659 -12.34059 -12.15360 -11.93307 -11.85840 -11.71142 -11.27610 -11.15914 -10.69431 -10.11526 -10.00292 -9.91592 -9.80717 -9.27977 -9.08315 -8.95851 -8.64080 -8.36205 -7.09721 -6.33322 -3.24786 1.57116 2.48831 2.61724 2.74049 3.23229 3.37818 3.43175 3.67006 3.80327 4.35061 4.58874 4.66701 4.73543 4.78213 4.90337 4.93641 5.04345 5.07596 5.17730 5.19983 5.25371 5.25683 5.34613 5.42932 5.46567 5.48539 5.64955 5.72570 5.77434 5.82074 5.87576 6.04327 6.15440 6.32905 6.45235 6.48861 6.51754 6.69520 7.07772 7.32358 7.48971 7.60520 8.23694 8.31243 9.01694 9.51571 10.16546 11.17871 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.003229 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.815751 B = 8668.306514 C = 9538.471882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.072 3.928 4 H 0.074 0.926 5 C 0.095 3.905 6 N -0.606 5.606 7 C -0.322 4.322 8 H 0.081 0.919 9 C -0.021 4.021 10 N -0.926 5.926 11 Si 1.069 2.931 12 H -0.299 1.299 13 H -0.299 1.299 14 H -0.284 1.284 15 C 0.131 3.869 16 C 0.136 3.864 17 H 0.108 0.892 18 N -0.717 5.717 19 C 0.513 3.487 20 O -0.522 6.522 21 C -0.059 4.059 22 C 0.005 3.995 23 C -0.191 4.191 24 C -0.211 4.211 25 C -0.014 4.014 26 C -0.072 4.072 27 O -0.171 6.171 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.263 0.737 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.398 0.602 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 -5.499 24.492 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.013 3.987 4 H 0.092 0.908 5 C -0.031 4.031 6 N -0.335 5.335 7 C -0.449 4.449 8 H 0.099 0.901 9 C -0.221 4.221 10 N -0.567 5.567 11 Si 0.903 3.097 12 H -0.228 1.228 13 H -0.228 1.228 14 H -0.212 1.212 15 C 0.004 3.996 16 C 0.030 3.970 17 H 0.126 0.874 18 N -0.369 5.369 19 C 0.298 3.702 20 O -0.396 6.396 21 C -0.099 4.099 22 C -0.046 4.046 23 C -0.211 4.211 24 C -0.230 4.230 25 C -0.064 4.064 26 C -0.129 4.129 27 O -0.068 6.068 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.232 0.768 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.277 -6.230 22.989 24.396 hybrid contribution 0.729 0.736 1.227 1.606 sum -4.548 -5.494 24.216 25.245 Atomic orbital electron populations 1.22802 0.81332 1.02634 0.99951 1.87957 1.19441 1.26988 1.94900 1.23412 0.93818 0.84638 0.96793 0.90835 1.22420 0.89542 0.96604 0.94495 1.44606 1.20687 1.66003 1.02232 1.20187 0.97673 1.39679 0.87394 0.90091 1.25832 1.06630 0.98962 0.90680 1.70895 1.07089 1.50550 1.28198 0.83867 0.75909 0.76146 0.73804 1.22751 1.22755 1.21151 1.21852 0.98482 0.93833 0.85455 1.22350 0.95505 1.01241 0.77862 0.87431 1.45832 1.19311 1.64633 1.07080 1.20336 0.83711 0.78388 0.87768 1.90779 1.27726 1.42361 1.78771 1.20085 0.94679 1.03942 0.91206 1.21385 0.98329 0.82858 1.02003 1.21504 0.93866 1.01418 1.04273 1.21525 1.01896 0.93271 1.06327 1.22387 0.84701 0.98037 1.01317 1.20286 1.00258 0.92826 0.99497 1.83909 1.33275 1.31982 1.57627 0.89678 0.94255 0.93784 0.94893 0.91961 0.92726 0.92463 0.95418 0.76819 0.85831 0.87136 0.83533 0.83575 0.90276 0.90559 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.85 101.05 1.10 1.44 16 2 O -0.37 -6.10 10.44 -35.23 -0.37 -6.47 16 3 C 0.07 1.23 3.06 -24.89 -0.08 1.15 16 4 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 5 C 0.09 2.09 4.39 -3.06 -0.01 2.08 16 6 N -0.61 -15.16 3.33 -170.06 -0.57 -15.72 16 7 C -0.32 -9.42 10.56 -15.06 -0.16 -9.58 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 10 N -0.93 -29.49 13.71 55.49 0.76 -28.73 16 11 Si 1.07 26.80 24.52 -169.99 -4.17 22.63 16 12 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 13 H -0.30 -7.08 6.82 56.52 0.39 -6.70 16 14 H -0.28 -6.56 5.41 56.52 0.31 -6.26 16 15 C 0.13 2.73 6.93 -2.53 -0.02 2.71 16 16 C 0.14 2.38 3.04 -65.78 -0.20 2.18 16 17 H 0.11 2.18 7.73 -51.93 -0.40 1.78 16 18 N -0.72 -9.36 5.23 -51.73 -0.27 -9.63 16 19 C 0.51 7.25 7.82 -10.98 -0.09 7.16 16 20 O -0.52 -10.09 15.78 5.56 0.09 -10.00 16 21 C -0.06 -0.58 6.23 -29.04 -0.18 -0.76 16 22 C 0.00 0.06 5.81 -35.62 -0.21 -0.15 16 23 C -0.19 -2.37 10.81 -39.70 -0.43 -2.80 16 24 C -0.21 -2.45 10.81 -39.70 -0.43 -2.88 16 25 C -0.01 -0.17 7.32 -35.62 -0.26 -0.43 16 26 C -0.07 -0.54 10.42 36.01 0.38 -0.16 16 27 O -0.17 -2.33 10.65 5.72 0.06 -2.27 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.37 8.11 -51.93 -0.42 -0.05 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.75 3.89 -51.92 -0.20 0.55 16 32 H 0.06 1.49 6.61 -51.93 -0.34 1.15 16 33 H 0.26 8.29 8.73 -40.82 -0.36 7.93 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.40 3.64 8.51 -40.82 -0.35 3.29 16 37 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -37.65 355.25 -6.25 -43.90 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.45 Total: 1.70 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.68 Total: -0.76 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.08 Total: -54.08 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.22 Total: -18.74 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -4.17 Total: 22.63 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.65 -6.25 -43.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081555191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.048 kcal (2) G-P(sol) polarization free energy of solvation -37.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds