Wall clock time and date at job start Fri Apr 10 2020 17:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99908 * 2 1 4 4 H 1.09005 * 110.64094 * 26.86613 * 3 2 1 5 5 C 1.54322 * 110.72468 * 263.52979 * 3 2 1 6 6 N 1.47023 * 107.26915 * 219.44553 * 5 3 2 7 7 C 1.36940 * 125.64613 * 178.96136 * 6 5 3 8 8 H 1.08001 * 119.99655 * 174.79943 * 7 6 5 9 9 C 1.38802 * 120.00107 * 354.79112 * 7 6 5 10 10 N 1.31619 * 120.00173 * 7.05889 * 9 7 6 11 11 Si 1.86807 * 120.00205 * 187.05728 * 9 7 6 12 12 H 1.48500 * 109.46691 * 94.98828 * 11 9 7 13 13 H 1.48503 * 109.47192 * 214.98919 * 11 9 7 14 14 H 1.48497 * 109.46827 * 334.98938 * 11 9 7 15 15 C 1.47423 * 108.70465 * 358.93783 * 6 5 3 16 16 C 1.54901 * 104.83329 * 24.12874 * 15 6 5 17 17 H 1.09001 * 111.03771 * 81.08135 * 16 15 6 18 18 N 1.46502 * 111.00486 * 204.91771 * 16 15 6 19 19 C 1.34772 * 120.00112 * 267.19324 * 18 16 15 20 20 O 1.21287 * 120.00106 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00411 * 180.02562 * 19 18 16 22 22 C 1.50698 * 109.47359 * 180.02562 * 21 19 18 23 23 O 1.34307 * 125.78316 * 270.02141 * 22 21 19 24 24 C 1.34309 * 109.47293 * 179.97438 * 23 22 21 25 25 C 1.34508 * 108.41994 * 0.24157 * 24 23 22 26 26 C 1.34506 * 125.79425 * 89.99547 * 22 21 19 27 27 C 1.50699 * 126.57960 * 0.04815 * 26 22 21 28 28 H 1.09004 * 109.46854 * 299.99442 * 1 2 3 29 29 H 1.08996 * 109.47626 * 59.99403 * 1 2 3 30 30 H 1.09005 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.87848 * 338.85474 * 5 3 2 32 32 H 1.08990 * 109.88556 * 100.02430 * 5 3 2 33 33 H 0.97006 * 120.00642 * 179.97438 * 10 9 7 34 34 H 1.09004 * 110.36514 * 265.29022 * 15 6 5 35 35 H 1.08998 * 110.36768 * 142.96857 * 15 6 5 36 36 H 0.96999 * 120.00145 * 87.20108 * 18 16 15 37 37 H 1.09000 * 109.46920 * 60.00133 * 21 19 18 38 38 H 1.09004 * 109.46902 * 300.00125 * 21 19 18 39 39 H 1.08000 * 125.78619 * 179.97438 * 24 23 22 40 40 H 1.08000 * 126.58027 * 179.76642 * 25 24 23 41 41 H 1.09001 * 109.47451 * 89.99782 * 27 26 22 42 42 H 1.09001 * 109.47368 * 209.99613 * 27 26 22 43 43 H 1.09003 * 109.47051 * 329.99577 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3352 2.0266 0.4610 5 6 2.3809 1.7382 -1.4342 6 7 3.6684 2.4440 -1.3580 7 6 4.3539 2.9704 -2.4202 8 1 5.2527 3.5451 -2.2515 9 6 3.8939 2.7652 -3.7136 10 7 2.7289 2.1864 -3.9137 11 14 4.9282 3.3107 -5.1705 12 1 5.7406 2.1666 -5.6566 13 1 4.0375 3.7840 -6.2604 14 1 5.8286 4.4150 -4.7523 15 6 4.0987 2.4918 0.0512 16 6 3.3817 1.2958 0.7256 17 1 3.9156 0.3639 0.5394 18 7 3.2169 1.5251 2.1631 19 6 4.1463 1.0738 3.0284 20 8 5.1195 0.4782 2.6170 21 6 3.9766 1.3091 4.5072 22 6 5.1442 0.7105 5.2484 23 8 5.2137 -0.5442 5.7224 24 6 6.3993 -0.7299 6.3256 25 6 7.1006 0.4151 6.2460 26 6 6.2937 1.3420 5.5471 27 6 6.6505 2.7662 5.2073 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.4767 0.8603 -2.0731 32 1 1.6152 2.4054 -1.8297 33 1 2.4071 2.0433 -4.8176 34 1 3.7871 3.4295 0.5114 35 1 5.1801 2.3746 0.1217 36 1 2.4387 2.0016 2.4922 37 1 3.0523 0.8409 4.8458 38 1 3.9338 2.3807 4.7020 39 1 6.7313 -1.6424 6.7984 40 1 8.0911 0.5918 6.6386 41 1 6.3325 3.4235 6.0166 42 1 7.7292 2.8488 5.0747 43 1 6.1478 3.0564 4.2846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082104193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:16 Heat of formation + Delta-G solvation = -35.292567 kcal Electronic energy + Delta-G solvation = -25692.919974 eV Core-core repulsion = 21934.125510 eV Total energy + Delta-G solvation = -3758.794464 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.63421 -39.68552 -38.12776 -35.91814 -34.31767 -34.04399 -32.33577 -31.59106 -29.19334 -28.60647 -27.21881 -26.13680 -25.96257 -24.13815 -21.63592 -21.08080 -20.53785 -20.06500 -19.55942 -17.56092 -17.11071 -16.83326 -16.35309 -15.72619 -15.55595 -15.32207 -14.90158 -14.42952 -14.25992 -14.19665 -13.62427 -13.46244 -13.23877 -13.16863 -12.86506 -12.76387 -12.56008 -12.32303 -12.09848 -11.89859 -11.57311 -11.47908 -11.22733 -11.02754 -10.81749 -10.74607 -10.16032 -10.01357 -9.83598 -9.76717 -9.63210 -9.15837 -8.75749 -8.56718 -8.37678 -6.89278 -5.75252 -3.09034 1.65546 2.51698 2.74003 2.90951 3.38520 3.42388 3.46805 3.48097 4.13292 4.47313 4.50815 4.80893 4.84248 4.88719 5.04118 5.15111 5.17145 5.37502 5.40624 5.46797 5.55657 5.56756 5.63826 5.70026 5.72523 5.79223 5.84346 5.91346 5.98190 6.04752 6.14340 6.15550 6.50198 6.51771 6.61951 6.84293 7.10901 7.24317 7.46860 7.64218 7.71849 7.86011 8.19480 8.37515 9.16514 9.77014 10.40366 11.36531 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.003442 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.166237 B = 8133.203077 C = 9330.620932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.231 4.231 8 H 0.081 0.919 9 C -0.005 4.005 10 N -0.920 5.920 11 Si 0.912 3.088 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.107 0.893 18 N -0.716 5.716 19 C 0.512 3.488 20 O -0.524 6.524 21 C -0.061 4.061 22 C 0.005 3.995 23 O -0.171 6.171 24 C -0.038 4.038 25 C -0.211 4.211 26 C -0.165 4.165 27 C -0.084 4.084 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.253 0.747 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.397 0.603 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.201 0.799 40 H 0.146 0.854 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 -1.175 20.822 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.359 4.359 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.027 3.973 17 H 0.125 0.875 18 N -0.367 5.367 19 C 0.297 3.703 20 O -0.399 6.399 21 C -0.101 4.101 22 C -0.045 4.045 23 O -0.067 6.067 24 C -0.106 4.106 25 C -0.230 4.230 26 C -0.166 4.166 27 C -0.141 4.141 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.230 0.770 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.218 0.782 40 H 0.164 0.836 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.682 -1.982 20.238 20.347 hybrid contribution 0.065 0.685 -0.597 0.912 sum -0.617 -1.296 19.641 19.693 Atomic orbital electron populations 1.22709 0.81759 1.02064 0.99710 1.87920 1.19062 1.27590 1.95030 1.23851 0.92944 0.84063 0.99453 0.91910 1.21569 0.88140 0.97342 0.89082 1.44252 1.21168 1.66597 1.00781 1.19072 1.05798 1.26956 0.84035 0.90121 1.24836 0.97292 1.00674 0.97351 1.69950 1.18364 1.48258 1.20099 0.86092 0.79307 0.78022 0.82312 1.21482 1.21755 1.20558 1.21823 0.97800 0.93772 0.86258 1.22420 0.96412 1.01131 0.77352 0.87545 1.45896 1.24956 1.58656 1.07160 1.20302 0.83147 0.79193 0.87632 1.90767 1.29625 1.40225 1.79324 1.20094 0.96065 1.02536 0.91380 1.21245 0.97850 0.83005 1.02398 1.83981 1.35437 1.29989 1.57336 1.23913 0.84430 1.00593 1.01670 1.21670 1.01800 0.93761 1.05806 1.20155 0.94070 0.98428 1.03957 1.20185 1.02169 0.90514 1.01222 0.94844 0.93656 0.90254 0.91805 0.93539 0.93639 0.95972 0.93175 0.76977 0.87198 0.86074 0.78231 0.83619 0.91610 0.91434 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.58 16 2 O -0.38 -6.97 10.43 -35.23 -0.37 -7.34 16 3 C 0.06 1.05 3.09 -24.90 -0.08 0.97 16 4 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 5 C 0.16 3.97 5.16 -3.06 -0.02 3.96 16 6 N -0.60 -15.43 3.39 -170.09 -0.58 -16.01 16 7 C -0.23 -6.47 10.26 -15.06 -0.15 -6.63 16 8 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 9 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 10 N -0.92 -26.91 10.36 55.49 0.57 -26.33 16 11 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 15 C 0.13 2.78 6.93 -2.53 -0.02 2.76 16 16 C 0.13 2.47 3.15 -65.78 -0.21 2.26 16 17 H 0.11 2.33 7.54 -51.93 -0.39 1.94 16 18 N -0.72 -10.08 5.20 -51.73 -0.27 -10.35 16 19 C 0.51 7.62 7.82 -10.99 -0.09 7.54 16 20 O -0.52 -10.43 15.67 5.55 0.09 -10.35 16 21 C -0.06 -0.64 5.85 -29.04 -0.17 -0.81 16 22 C 0.01 0.07 5.81 -35.63 -0.21 -0.14 16 23 O -0.17 -2.32 10.65 5.68 0.06 -2.26 16 24 C -0.04 -0.42 12.09 29.41 0.36 -0.06 16 25 C -0.21 -2.40 10.87 -39.70 -0.43 -2.83 16 26 C -0.16 -2.06 6.16 -104.75 -0.65 -2.71 16 27 C -0.08 -0.87 9.99 36.01 0.36 -0.51 16 28 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.77 7.21 -51.93 -0.37 1.39 16 32 H 0.05 1.21 7.61 -51.93 -0.40 0.81 16 33 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 4.12 8.57 -40.82 -0.35 3.77 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.12 0.90 7.76 -51.93 -0.40 0.50 16 39 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.72 7.78 -51.93 -0.40 0.31 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -35.52 361.62 -6.85 -42.37 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.49 Total: 2.49 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.30 Total: 5.14 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.27 Total: -52.69 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.22 Total: -19.94 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.52 -6.85 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082104193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.082 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds