Wall clock time and date at job start Fri Apr 10 2020 17:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99908 * 2 1 4 4 H 1.09005 * 110.64094 * 26.86613 * 3 2 1 5 5 C 1.54322 * 110.72468 * 263.52979 * 3 2 1 6 6 N 1.47023 * 107.26915 * 219.44553 * 5 3 2 7 7 C 1.36940 * 125.64613 * 178.96136 * 6 5 3 8 8 H 1.08001 * 119.99655 * 174.79943 * 7 6 5 9 9 C 1.38802 * 120.00107 * 354.79112 * 7 6 5 10 10 N 1.31619 * 120.00173 * 7.05889 * 9 7 6 11 11 Si 1.86807 * 120.00205 * 187.05728 * 9 7 6 12 12 H 1.48500 * 109.46691 * 94.98828 * 11 9 7 13 13 H 1.48503 * 109.47192 * 214.98919 * 11 9 7 14 14 H 1.48497 * 109.46827 * 334.98938 * 11 9 7 15 15 C 1.47423 * 108.70465 * 358.93783 * 6 5 3 16 16 C 1.54901 * 104.83329 * 24.12874 * 15 6 5 17 17 H 1.09001 * 111.03771 * 81.08135 * 16 15 6 18 18 N 1.46502 * 111.00486 * 204.91771 * 16 15 6 19 19 C 1.34772 * 120.00112 * 267.19324 * 18 16 15 20 20 O 1.21287 * 120.00106 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00411 * 180.02562 * 19 18 16 22 22 C 1.50698 * 109.47359 * 180.02562 * 21 19 18 23 23 O 1.34307 * 125.78316 * 270.02141 * 22 21 19 24 24 C 1.34309 * 109.47293 * 179.97438 * 23 22 21 25 25 C 1.34508 * 108.41994 * 0.24157 * 24 23 22 26 26 C 1.34506 * 125.79425 * 89.99547 * 22 21 19 27 27 C 1.50699 * 126.57960 * 0.04815 * 26 22 21 28 28 H 1.09004 * 109.46854 * 299.99442 * 1 2 3 29 29 H 1.08996 * 109.47626 * 59.99403 * 1 2 3 30 30 H 1.09005 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.87848 * 338.85474 * 5 3 2 32 32 H 1.08990 * 109.88556 * 100.02430 * 5 3 2 33 33 H 0.97006 * 120.00642 * 179.97438 * 10 9 7 34 34 H 1.09004 * 110.36514 * 265.29022 * 15 6 5 35 35 H 1.08998 * 110.36768 * 142.96857 * 15 6 5 36 36 H 0.96999 * 120.00145 * 87.20108 * 18 16 15 37 37 H 1.09000 * 109.46920 * 60.00133 * 21 19 18 38 38 H 1.09004 * 109.46902 * 300.00125 * 21 19 18 39 39 H 1.08000 * 125.78619 * 179.97438 * 24 23 22 40 40 H 1.08000 * 126.58027 * 179.76642 * 25 24 23 41 41 H 1.09001 * 109.47451 * 89.99782 * 27 26 22 42 42 H 1.09001 * 109.47368 * 209.99613 * 27 26 22 43 43 H 1.09003 * 109.47051 * 329.99577 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3352 2.0266 0.4610 5 6 2.3809 1.7382 -1.4342 6 7 3.6684 2.4440 -1.3580 7 6 4.3539 2.9704 -2.4202 8 1 5.2527 3.5451 -2.2515 9 6 3.8939 2.7652 -3.7136 10 7 2.7289 2.1864 -3.9137 11 14 4.9282 3.3107 -5.1705 12 1 5.7406 2.1666 -5.6566 13 1 4.0375 3.7840 -6.2604 14 1 5.8286 4.4150 -4.7523 15 6 4.0987 2.4918 0.0512 16 6 3.3817 1.2958 0.7256 17 1 3.9156 0.3639 0.5394 18 7 3.2169 1.5251 2.1631 19 6 4.1463 1.0738 3.0284 20 8 5.1195 0.4782 2.6170 21 6 3.9766 1.3091 4.5072 22 6 5.1442 0.7105 5.2484 23 8 5.2137 -0.5442 5.7224 24 6 6.3993 -0.7299 6.3256 25 6 7.1006 0.4151 6.2460 26 6 6.2937 1.3420 5.5471 27 6 6.6505 2.7662 5.2073 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.4767 0.8603 -2.0731 32 1 1.6152 2.4054 -1.8297 33 1 2.4071 2.0433 -4.8176 34 1 3.7871 3.4295 0.5114 35 1 5.1801 2.3746 0.1217 36 1 2.4387 2.0016 2.4922 37 1 3.0523 0.8409 4.8458 38 1 3.9338 2.3807 4.7020 39 1 6.7313 -1.6424 6.7984 40 1 8.0911 0.5918 6.6386 41 1 6.3325 3.4235 6.0166 42 1 7.7292 2.8488 5.0747 43 1 6.1478 3.0564 4.2846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082104193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:16 Heat of formation + Delta-G solvation = -61.358407 kcal Electronic energy + Delta-G solvation = -25694.050274 eV Core-core repulsion = 21934.125510 eV Total energy + Delta-G solvation = -3759.924764 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.49718 -41.03514 -39.60260 -37.51006 -35.61750 -35.18470 -33.80760 -32.93487 -30.65264 -29.80999 -28.75708 -27.52821 -27.00919 -25.87985 -22.74148 -22.31380 -22.12115 -21.58482 -20.50921 -19.16797 -18.38073 -18.06604 -17.62695 -17.22731 -16.71472 -16.51325 -16.36937 -15.82397 -15.75521 -15.33858 -15.08528 -14.83326 -14.51305 -14.35599 -14.02203 -13.91866 -13.63423 -13.59477 -13.41102 -13.20681 -13.01967 -12.87968 -12.78774 -12.58467 -12.33856 -12.28566 -12.06280 -11.88380 -11.63218 -11.09784 -10.76524 -10.60048 -10.48048 -10.09305 -9.24945 -8.96670 -7.89600 -5.26157 0.76596 1.44631 1.48038 1.56061 1.60311 1.64914 2.02694 2.29897 2.46655 2.78604 3.30315 3.53387 3.61577 3.78432 3.92977 3.95351 4.01821 4.08756 4.14203 4.32139 4.38852 4.45222 4.47978 4.60777 4.65461 4.65665 4.82825 4.83153 4.88361 4.91530 4.96227 5.03323 5.17854 5.32087 5.35362 5.37853 5.47782 5.65354 5.70418 6.13078 6.24751 6.32810 6.54353 7.03876 7.25889 7.69335 8.32072 9.20359 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.003442 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.166237 B = 8133.203077 C = 9330.620932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.077 3.923 4 H 0.102 0.898 5 C 0.173 3.827 6 N -0.622 5.622 7 C -0.249 4.249 8 H 0.083 0.917 9 C -0.060 4.060 10 N -0.946 5.946 11 Si 0.978 3.022 12 H -0.291 1.291 13 H -0.290 1.290 14 H -0.266 1.266 15 C 0.132 3.868 16 C 0.150 3.850 17 H 0.069 0.931 18 N -0.698 5.698 19 C 0.512 3.488 20 O -0.581 6.581 21 C -0.049 4.049 22 C -0.023 4.023 23 O -0.192 6.192 24 C -0.041 4.041 25 C -0.230 4.230 26 C -0.180 4.180 27 C -0.083 4.083 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.098 0.902 31 H 0.016 0.984 32 H 0.022 0.978 33 H 0.249 0.751 34 H 0.048 0.952 35 H 0.032 0.968 36 H 0.420 0.580 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.235 0.765 40 H 0.165 0.835 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 -0.273 23.182 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C 0.018 3.982 4 H 0.120 0.880 5 C 0.047 3.953 6 N -0.350 5.350 7 C -0.377 4.377 8 H 0.101 0.899 9 C -0.254 4.254 10 N -0.595 5.595 11 Si 0.806 3.194 12 H -0.218 1.218 13 H -0.217 1.217 14 H -0.190 1.190 15 C 0.005 3.995 16 C 0.043 3.957 17 H 0.087 0.913 18 N -0.350 5.350 19 C 0.300 3.700 20 O -0.460 6.460 21 C -0.088 4.088 22 C -0.073 4.073 23 O -0.089 6.089 24 C -0.108 4.108 25 C -0.249 4.249 26 C -0.182 4.182 27 C -0.140 4.140 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.258 0.742 37 H 0.159 0.841 38 H 0.175 0.825 39 H 0.251 0.749 40 H 0.182 0.818 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.317 -1.050 22.656 22.718 hybrid contribution 0.286 0.354 -1.280 1.358 sum -1.031 -0.696 21.376 21.412 Atomic orbital electron populations 1.22997 0.79254 1.03845 1.00887 1.87903 1.21856 1.27199 1.94927 1.23514 0.93669 0.85266 0.95752 0.88047 1.21304 0.87109 0.94734 0.92143 1.44519 1.21845 1.66454 1.02194 1.19447 1.06067 1.26970 0.85231 0.89869 1.25677 0.98448 1.01314 0.99941 1.70163 1.19724 1.49440 1.20123 0.85068 0.77776 0.77737 0.78802 1.21778 1.21654 1.19009 1.21936 0.97122 0.95862 0.84556 1.21803 0.95601 0.98238 0.80073 0.91288 1.45607 1.25907 1.58659 1.04876 1.21133 0.81890 0.77585 0.89430 1.90751 1.31978 1.42693 1.80534 1.20191 0.96629 1.04888 0.87108 1.21712 0.99084 0.83108 1.03427 1.83967 1.36566 1.30501 1.57896 1.24685 0.83565 1.01811 1.00742 1.22045 1.02772 0.93896 1.06164 1.20602 0.94249 0.99524 1.03801 1.20231 1.02157 0.89924 1.01672 0.91382 0.94632 0.88349 0.96533 0.96017 0.94194 0.93414 0.94911 0.74169 0.84104 0.82486 0.74894 0.81779 0.89268 0.91436 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -14.45 10.43 -148.98 -1.55 -16.00 16 3 C 0.08 2.83 3.09 31.78 0.10 2.92 16 4 H 0.10 2.94 7.68 -2.38 -0.02 2.92 16 5 C 0.17 8.64 5.16 86.73 0.45 9.09 16 6 N -0.62 -32.79 3.39 -692.03 -2.35 -35.14 16 7 C -0.25 -14.27 10.26 84.03 0.86 -13.41 16 8 H 0.08 4.59 7.84 -2.91 -0.02 4.56 16 9 C -0.06 -3.48 5.48 84.86 0.46 -3.02 16 10 N -0.95 -57.33 10.36 21.65 0.22 -57.11 16 11 Si 0.98 46.44 29.56 68.60 2.03 48.47 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 C 0.13 5.60 6.93 86.85 0.60 6.20 16 16 C 0.15 5.55 3.15 46.38 0.15 5.70 16 17 H 0.07 3.13 7.54 -2.39 -0.02 3.11 16 18 N -0.70 -18.07 5.20 -435.97 -2.27 -20.33 16 19 C 0.51 14.42 7.82 87.66 0.69 15.11 16 20 O -0.58 -23.30 15.67 -3.05 -0.05 -23.35 16 21 C -0.05 -0.89 5.85 29.10 0.17 -0.72 16 22 C -0.02 -0.57 5.81 24.83 0.14 -0.43 16 23 O -0.19 -4.98 10.65 -2.58 -0.03 -5.01 16 24 C -0.04 -0.84 12.09 66.97 0.81 -0.03 16 25 C -0.23 -4.91 10.87 22.19 0.24 -4.67 16 26 C -0.18 -4.26 6.16 -19.94 -0.12 -4.38 16 27 C -0.08 -1.58 9.99 71.24 0.71 -0.86 16 28 H 0.07 1.30 8.11 -2.38 -0.02 1.28 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.02 0.96 7.21 -2.39 -0.02 0.95 16 32 H 0.02 1.17 7.61 -2.39 -0.02 1.15 16 33 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.42 7.00 8.57 -92.71 -0.79 6.20 16 37 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.16 1.67 7.76 -2.39 -0.02 1.65 16 39 H 0.23 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.18 7.78 -2.39 -0.02 1.16 16 Total: -1.00 -82.37 361.62 2.72 -79.65 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.22 Total: 15.40 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 6.49 Total: 13.41 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -4.39 Total: -112.58 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.63 Total: -44.35 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -82.37 2.72 -79.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082104193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.290 kcal (2) G-P(sol) polarization free energy of solvation -82.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds