Wall clock time and date at job start Fri Apr 10 2020 17:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00064 * 2 1 4 4 H 1.09005 * 110.91397 * 26.10025 * 3 2 1 5 5 C 1.54910 * 111.00506 * 262.20031 * 3 2 1 6 6 N 1.47426 * 104.83438 * 204.91610 * 5 3 2 7 7 C 1.36930 * 125.65129 * 204.16423 * 6 5 3 8 8 H 1.08003 * 120.00275 * 179.97438 * 7 6 5 9 9 C 1.38820 * 119.99994 * 359.95748 * 7 6 5 10 10 N 1.31621 * 119.99514 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99960 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46997 * 59.99916 * 11 9 7 13 13 H 1.48498 * 109.47037 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47176 * 299.99794 * 11 9 7 15 15 C 1.47027 * 108.70068 * 24.12653 * 6 5 3 16 16 C 1.54329 * 107.27332 * 358.94253 * 15 6 5 17 17 H 1.08997 * 110.71635 * 96.34319 * 16 15 6 18 18 N 1.46496 * 110.72041 * 219.44740 * 16 15 6 19 19 C 1.34774 * 119.99544 * 273.54376 * 18 16 15 20 20 O 1.21279 * 120.00472 * 0.02562 * 19 18 16 21 21 C 1.50706 * 120.00020 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.46953 * 299.99667 * 21 19 18 23 23 C 1.52997 * 109.47103 * 59.99861 * 21 19 18 24 24 C 1.50698 * 109.47294 * 180.02562 * 21 19 18 25 25 C 1.34505 * 125.79170 * 119.71250 * 24 21 19 26 26 C 1.41382 * 106.84275 * 179.88694 * 25 24 21 27 27 C 1.34522 * 106.84127 * 0.37678 * 26 25 24 28 28 O 1.34307 * 125.78472 * 300.02066 * 24 21 19 29 29 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46688 * 299.99673 * 1 2 3 31 31 H 1.08998 * 109.47315 * 60.00000 * 1 2 3 32 32 H 1.08999 * 110.37000 * 86.07613 * 5 3 2 33 33 H 1.09004 * 110.36616 * 323.75505 * 5 3 2 34 34 H 0.97004 * 119.99233 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.88353 * 239.52522 * 15 6 5 36 36 H 1.08994 * 110.01108 * 118.43230 * 15 6 5 37 37 H 0.96994 * 120.00700 * 93.54496 * 18 16 15 38 38 H 1.09002 * 109.46777 * 180.02562 * 23 21 19 39 39 H 1.09000 * 109.47140 * 300.00046 * 23 21 19 40 40 H 1.08992 * 109.47280 * 59.99899 * 23 21 19 41 41 H 1.08000 * 126.58310 * 0.02562 * 25 24 21 42 42 H 1.07998 * 126.58347 * 180.11895 * 26 25 24 43 43 H 1.07995 * 125.79404 * 179.75334 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3332 2.0329 0.4480 5 6 2.4154 1.7329 -1.4328 6 7 3.4909 2.7230 -1.2414 7 6 3.8421 3.7021 -2.1319 8 1 4.6479 4.3818 -1.8973 9 6 3.1625 3.8208 -3.3366 10 7 2.1810 2.9919 -3.6229 11 14 3.6411 5.1569 -4.5512 12 1 5.0584 4.9740 -4.9552 13 1 2.7699 5.0707 -5.7506 14 1 3.4760 6.4877 -3.9135 15 6 4.1233 2.4855 0.0645 16 6 3.3825 1.3033 0.7242 17 1 3.9136 0.3681 0.5469 18 7 3.2109 1.5357 2.1604 19 6 4.1857 1.1822 3.0213 20 8 5.2050 0.6721 2.6071 21 6 4.0090 1.4206 4.4989 22 1 3.8707 2.4864 4.6809 23 6 2.7813 0.6548 4.9959 24 6 5.2331 0.9406 5.2351 25 6 6.0412 1.6997 5.9967 26 6 7.0548 0.8483 6.4934 27 6 6.8102 -0.3786 5.9988 28 8 5.7056 -0.3167 5.2374 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.5685 2.1874 -1.9469 33 1 2.7851 0.8749 -1.9943 34 1 1.7064 3.0747 -4.4649 35 1 4.0316 3.3749 0.6880 36 1 5.1753 2.2347 -0.0707 37 1 2.3958 1.9439 2.4917 38 1 2.6533 0.8277 6.0645 39 1 1.8961 1.0025 4.4633 40 1 2.9195 -0.4108 4.8139 41 1 5.9348 2.7563 6.1932 42 1 7.8713 1.1298 7.1418 43 1 7.4019 -1.2632 6.1826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082126852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:18 Heat of formation + Delta-G solvation = -55.682548 kcal Electronic energy + Delta-G solvation = -25888.591314 eV Core-core repulsion = 22128.912674 eV Total energy + Delta-G solvation = -3759.678640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.48526 -41.15780 -39.64435 -37.53234 -35.70313 -35.20029 -33.80472 -33.48465 -30.61799 -29.54518 -28.75216 -27.50101 -26.32435 -25.29620 -22.78929 -22.61548 -22.31264 -21.57533 -20.82492 -19.22997 -18.48229 -18.14058 -17.73060 -17.20110 -16.76186 -16.62781 -16.25415 -15.85137 -15.69500 -15.52384 -15.08142 -15.02587 -14.52046 -14.32067 -13.92004 -13.77381 -13.66725 -13.50764 -13.31238 -13.18167 -13.02874 -12.70790 -12.61152 -12.54570 -12.48943 -12.33611 -12.09460 -11.90110 -11.58578 -11.00085 -10.80018 -10.77649 -10.55131 -10.14351 -9.36876 -8.98435 -7.81478 -5.28955 0.80711 1.47018 1.50673 1.55426 1.57115 1.69862 2.07939 2.18074 2.45034 2.74808 3.29192 3.52733 3.57236 3.64911 3.84636 3.95309 4.01451 4.06326 4.14761 4.23930 4.34518 4.35659 4.48273 4.62150 4.67496 4.76311 4.81136 4.83071 4.89901 4.90580 4.97551 5.04018 5.16962 5.27708 5.29106 5.42063 5.43507 5.65738 5.67656 6.18407 6.27547 6.31569 6.48773 7.03740 7.19632 7.68268 8.30832 9.19746 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.003456 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.898368 B = 8099.944619 C = 9201.825450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.080 3.920 4 H 0.095 0.905 5 C 0.146 3.854 6 N -0.618 5.618 7 C -0.247 4.247 8 H 0.082 0.918 9 C -0.061 4.061 10 N -0.947 5.947 11 Si 0.985 3.015 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.272 1.272 15 C 0.132 3.868 16 C 0.153 3.847 17 H 0.073 0.927 18 N -0.698 5.698 19 C 0.513 3.487 20 O -0.577 6.577 21 C -0.022 4.022 22 H 0.159 0.841 23 C -0.139 4.139 24 C -0.013 4.013 25 C -0.214 4.214 26 C -0.226 4.226 27 C -0.051 4.051 28 O -0.189 6.189 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.089 0.911 33 H -0.014 1.014 34 H 0.250 0.750 35 H 0.044 0.956 36 H 0.010 0.990 37 H 0.418 0.582 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.047 0.953 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 -3.183 22.130 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.020 3.980 4 H 0.113 0.887 5 C 0.020 3.980 6 N -0.346 5.346 7 C -0.375 4.375 8 H 0.100 0.900 9 C -0.253 4.253 10 N -0.596 5.596 11 Si 0.812 3.188 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.197 1.197 15 C 0.006 3.994 16 C 0.047 3.953 17 H 0.091 0.909 18 N -0.350 5.350 19 C 0.300 3.700 20 O -0.456 6.456 21 C -0.042 4.042 22 H 0.177 0.823 23 C -0.196 4.196 24 C -0.063 4.063 25 C -0.233 4.233 26 C -0.245 4.245 27 C -0.118 4.118 28 O -0.085 6.085 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.004 0.996 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.256 0.744 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.185 0.815 42 H 0.188 0.812 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.617 -3.890 21.492 21.901 hybrid contribution 0.287 0.811 -1.029 1.341 sum -1.330 -3.079 20.463 20.736 Atomic orbital electron populations 1.23004 0.79170 1.03920 1.00877 1.87853 1.21871 1.26861 1.94949 1.23598 0.93052 0.84971 0.96344 0.88696 1.22070 0.93261 0.90153 0.92549 1.44543 1.38108 1.35133 1.16811 1.19422 1.14272 1.06771 0.97057 0.90038 1.25659 0.98605 1.01583 0.99488 1.69987 1.25365 1.39957 1.24252 0.85067 0.77122 0.78722 0.77872 1.20884 1.21642 1.19730 1.21659 0.94848 0.95753 0.87190 1.21622 0.96019 0.97495 0.80179 0.90904 1.45703 1.21003 1.63133 1.05171 1.21151 0.82544 0.76954 0.89344 1.90733 1.30035 1.44566 1.80244 1.20047 0.92175 1.04623 0.87391 0.82337 1.21823 0.94550 0.99554 1.03691 1.21993 0.99140 0.82680 1.02514 1.21927 0.96675 1.01771 1.02890 1.22159 1.02851 0.93180 1.06333 1.24748 0.89213 1.01930 0.95937 1.84020 1.37049 1.31005 1.56451 0.87992 0.91676 0.94614 0.89319 0.99617 0.93989 0.93810 0.97175 0.74425 0.88843 0.88830 0.93347 0.81452 0.81233 0.75481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -14.00 10.51 -148.98 -1.57 -15.57 16 3 C 0.08 2.99 3.15 31.99 0.10 3.09 16 4 H 0.10 3.05 7.69 -2.38 -0.02 3.03 16 5 C 0.15 7.31 5.62 86.86 0.49 7.80 16 6 N -0.62 -32.69 3.39 -691.95 -2.35 -35.04 16 7 C -0.25 -14.00 10.27 84.04 0.86 -13.14 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 10 N -0.95 -55.72 10.09 21.65 0.22 -55.50 16 11 Si 0.98 45.33 29.55 68.60 2.03 47.36 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.13 5.90 6.99 86.73 0.61 6.51 16 16 C 0.15 5.81 2.97 46.18 0.14 5.95 16 17 H 0.07 3.21 7.69 -2.39 -0.02 3.19 16 18 N -0.70 -19.37 5.02 -436.91 -2.19 -21.57 16 19 C 0.51 15.30 7.15 87.66 0.63 15.93 16 20 O -0.58 -23.64 15.53 3.54 0.05 -23.58 16 21 C -0.02 -0.43 3.13 -12.29 -0.04 -0.47 16 22 H 0.16 2.03 8.10 -2.39 -0.02 2.01 16 23 C -0.14 -2.01 9.07 71.98 0.65 -1.35 16 24 C -0.01 -0.32 5.20 24.83 0.13 -0.19 16 25 C -0.21 -4.59 10.78 22.19 0.24 -4.35 16 26 C -0.23 -4.54 10.91 22.19 0.24 -4.29 16 27 C -0.05 -1.09 12.09 66.97 0.81 -0.28 16 28 O -0.19 -5.32 10.35 4.00 0.04 -5.28 16 29 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 4.88 5.87 -2.39 -0.01 4.87 16 33 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.04 1.83 8.03 -2.38 -0.02 1.81 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.42 8.12 7.94 -92.71 -0.74 7.38 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.93 7.56 -2.39 -0.02 0.91 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 43 H 0.23 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -78.99 359.61 3.06 -75.93 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.28 Total: 19.10 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 6.55 Total: 14.14 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -4.32 Total: -112.10 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -1.47 Total: -44.43 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -78.99 3.06 -75.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082126852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.243 kcal (2) G-P(sol) polarization free energy of solvation -78.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds