Wall clock time and date at job start Fri Apr 10 2020 17:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00403 * 2 1 4 4 H 1.08998 * 110.88442 * 32.42780 * 3 2 1 5 5 C 1.54917 * 111.00398 * 268.54749 * 3 2 1 6 6 N 1.47422 * 104.83074 * 204.87574 * 5 3 2 7 7 C 1.36938 * 125.64571 * 204.09198 * 6 5 3 8 8 H 1.07998 * 120.00058 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99997 * 0.02987 * 7 6 5 10 10 N 1.31620 * 120.00091 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47071 * 89.99686 * 11 9 7 13 13 H 1.48497 * 109.47157 * 209.99349 * 11 9 7 14 14 H 1.48494 * 109.47207 * 329.99972 * 11 9 7 15 15 C 1.47020 * 108.70191 * 24.12901 * 6 5 3 16 16 C 1.54316 * 107.27568 * 358.94070 * 15 6 5 17 17 H 1.09003 * 110.72351 * 96.16743 * 16 15 6 18 18 N 1.46496 * 110.87374 * 219.37532 * 16 15 6 19 19 C 1.34781 * 119.99704 * 268.60454 * 18 16 15 20 20 O 1.21286 * 120.00058 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00099 * 179.97438 * 19 18 16 22 22 H 1.08997 * 109.47099 * 60.00012 * 21 19 18 23 23 C 1.53001 * 109.47400 * 300.00708 * 21 19 18 24 24 C 1.50693 * 109.47343 * 180.02562 * 21 19 18 25 25 C 1.34517 * 125.78946 * 240.00393 * 24 21 19 26 26 C 1.41383 * 106.84221 * 179.97438 * 25 24 21 27 27 C 1.34513 * 106.84202 * 359.97438 * 26 25 24 28 28 O 1.34303 * 125.79484 * 59.69329 * 24 21 19 29 29 H 1.08995 * 109.47537 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46919 * 300.00196 * 1 2 3 31 31 H 1.08999 * 109.47310 * 59.99456 * 1 2 3 32 32 H 1.08998 * 110.36726 * 323.71587 * 5 3 2 33 33 H 1.09005 * 110.36534 * 86.04108 * 5 3 2 34 34 H 0.96998 * 119.99446 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.88493 * 239.51822 * 15 6 5 36 36 H 1.09005 * 110.00581 * 118.43132 * 15 6 5 37 37 H 0.97001 * 120.00701 * 88.60833 * 18 16 15 38 38 H 1.09005 * 109.46656 * 299.99417 * 23 21 19 39 39 H 1.09006 * 109.47264 * 59.99304 * 23 21 19 40 40 H 1.08997 * 109.47359 * 179.97438 * 23 21 19 41 41 H 1.08008 * 126.58028 * 359.95948 * 25 24 21 42 42 H 1.07997 * 126.57856 * 179.97438 * 26 25 24 43 43 H 1.07994 * 125.79063 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5461 5 6 2.2697 1.7977 -1.4458 6 7 3.3606 2.7813 -1.3195 7 6 3.6227 3.7994 -2.1969 8 1 4.4496 4.4698 -2.0147 9 6 2.8254 3.9700 -3.3204 10 7 1.8179 3.1527 -3.5426 11 14 3.1826 5.3593 -4.5168 12 1 4.1233 4.8827 -5.5624 13 1 1.9164 5.8012 -5.1545 14 1 3.7921 6.4985 -3.7848 15 6 4.1210 2.4873 -0.0960 16 6 3.4486 1.2747 0.5813 17 1 3.9556 0.3495 0.3072 18 7 3.4228 1.4378 2.0369 19 6 4.4340 0.9566 2.7869 20 8 5.3655 0.3890 2.2567 21 6 4.4078 1.1248 4.2842 22 1 3.5228 0.6343 4.6895 23 6 4.3681 2.6148 4.6295 24 6 5.6445 0.5041 4.8812 25 6 5.6672 -0.5000 5.7760 26 6 7.0266 -0.7650 6.0599 27 6 7.7534 0.0926 5.3212 28 8 6.9111 0.8557 4.6057 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.5795 0.9669 -2.0796 33 1 1.3760 2.2725 -1.8509 34 1 1.2611 3.2717 -4.3279 35 1 4.0942 3.3475 0.5728 36 1 5.1537 2.2458 -0.3478 37 1 2.6780 1.8920 2.4611 38 1 5.2531 3.1054 4.2242 39 1 3.4737 3.0641 4.1976 40 1 4.3487 2.7365 5.7125 41 1 4.8112 -1.0065 6.1970 42 1 7.4083 -1.5126 6.7394 43 1 8.8314 0.1544 5.3035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082126853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:21 Heat of formation + Delta-G solvation = -31.804521 kcal Electronic energy + Delta-G solvation = -25886.218203 eV Core-core repulsion = 22127.574992 eV Total energy + Delta-G solvation = -3758.643211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.61080 -39.80397 -38.14450 -35.92942 -34.39387 -33.93658 -32.88102 -31.69206 -28.97835 -28.52411 -27.12971 -26.12166 -24.88378 -23.98329 -21.82259 -21.41392 -20.65377 -20.12810 -19.66301 -17.76056 -17.13354 -16.85942 -16.37663 -15.80916 -15.57227 -15.17432 -14.94160 -14.44225 -14.30349 -14.29126 -13.73385 -13.55156 -13.20876 -12.91048 -12.84702 -12.71269 -12.46015 -12.26044 -11.93272 -11.82177 -11.69673 -11.40805 -11.30192 -11.02765 -10.84631 -10.80635 -10.20213 -9.95166 -9.91068 -9.81645 -9.69085 -9.09744 -8.72084 -8.68526 -8.50588 -6.91625 -5.71187 -3.14200 1.69646 2.54612 2.73830 2.95165 3.31603 3.38307 3.43287 3.44926 4.11154 4.37006 4.47118 4.66276 4.78899 4.89539 5.01476 5.10684 5.20870 5.40279 5.41696 5.50075 5.50885 5.60832 5.67074 5.68258 5.74625 5.80487 5.84191 5.89783 5.95837 6.04960 6.07439 6.19593 6.43325 6.46443 6.67254 6.88185 7.13340 7.24053 7.53564 7.64235 7.71626 7.78036 8.24766 8.36983 9.14474 9.74831 10.37312 11.32635 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.003430 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.497220 B = 8161.701249 C = 9136.399660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.054 3.946 4 H 0.066 0.934 5 C 0.140 3.860 6 N -0.600 5.600 7 C -0.223 4.223 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.137 3.863 17 H 0.103 0.897 18 N -0.713 5.713 19 C 0.515 3.485 20 O -0.525 6.525 21 C -0.031 4.031 22 H 0.124 0.876 23 C -0.145 4.145 24 C 0.018 3.982 25 C -0.211 4.211 26 C -0.218 4.218 27 C -0.038 4.038 28 O -0.158 6.158 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.026 0.974 33 H 0.112 0.888 34 H 0.253 0.747 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.397 0.603 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 -4.773 19.504 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.014 3.986 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.098 0.902 9 C -0.206 4.206 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.033 3.967 17 H 0.121 0.879 18 N -0.364 5.364 19 C 0.300 3.700 20 O -0.400 6.400 21 C -0.052 4.052 22 H 0.141 0.859 23 C -0.203 4.203 24 C -0.033 4.033 25 C -0.230 4.230 26 C -0.237 4.237 27 C -0.107 4.107 28 O -0.053 6.053 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.130 0.870 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.742 -5.037 18.703 19.447 hybrid contribution -0.324 0.773 -0.277 0.883 sum 1.419 -4.264 18.426 18.966 Atomic orbital electron populations 1.22694 0.81565 1.01896 1.00027 1.87846 1.19263 1.27718 1.95137 1.24027 0.92170 0.83764 1.00534 0.91590 1.22333 0.95346 0.91891 0.89051 1.44300 1.31852 1.33124 1.23517 1.19101 1.11150 1.04157 1.00659 0.90191 1.24804 0.98023 0.99351 0.98396 1.69754 1.19985 1.38675 1.28755 0.86027 0.77064 0.81195 0.80942 1.21517 1.21631 1.20634 1.21591 0.95193 0.93615 0.89225 1.22129 0.96453 1.00437 0.77726 0.87907 1.45938 1.23650 1.59195 1.07595 1.20295 0.82602 0.78721 0.88375 1.90751 1.33931 1.41584 1.73776 1.19916 0.93615 0.98746 0.92919 0.85856 1.21819 1.03730 0.91965 1.02772 1.21555 0.83748 0.98774 0.99269 1.21512 0.97989 1.00402 1.03094 1.21750 0.93258 1.03547 1.05156 1.24021 0.96033 0.94666 0.95936 1.84050 1.15361 1.51593 1.54269 0.90348 0.94811 0.93408 0.95584 0.86996 0.93605 0.95202 0.94905 0.76853 0.91231 0.90890 0.90978 0.83604 0.83618 0.78298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.89 101.05 1.10 1.60 16 2 O -0.38 -6.94 10.52 -35.23 -0.37 -7.32 16 3 C 0.05 1.04 3.11 -24.58 -0.08 0.96 16 4 H 0.07 1.15 7.77 -51.93 -0.40 0.74 16 5 C 0.14 3.38 5.62 -2.53 -0.01 3.36 16 6 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 7 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 10 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 11 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.13 2.85 7.00 -3.07 -0.02 2.83 16 16 C 0.14 2.59 3.05 -66.10 -0.20 2.39 16 17 H 0.10 2.18 7.55 -51.93 -0.39 1.79 16 18 N -0.71 -10.48 5.01 -52.03 -0.26 -10.75 16 19 C 0.52 7.93 7.15 -10.98 -0.08 7.85 16 20 O -0.53 -10.54 15.44 -1.69 -0.03 -10.56 16 21 C -0.03 -0.34 3.13 -92.93 -0.29 -0.63 16 22 H 0.12 1.00 8.10 -51.93 -0.42 0.58 16 23 C -0.15 -1.32 9.07 37.16 0.34 -0.98 16 24 C 0.02 0.23 5.21 -35.63 -0.19 0.05 16 25 C -0.21 -2.43 10.78 -39.70 -0.43 -2.86 16 26 C -0.22 -2.35 10.91 -39.70 -0.43 -2.78 16 27 C -0.04 -0.43 12.09 29.42 0.36 -0.08 16 28 O -0.16 -2.27 10.33 -1.53 -0.02 -2.29 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 2.97 5.88 -51.93 -0.31 2.67 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 4.55 7.98 -40.82 -0.33 4.22 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.55 7.57 -51.93 -0.39 0.15 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 42 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -34.38 359.56 -6.91 -41.29 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.43 Total: 4.20 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.19 Total: 5.00 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.28 Total: -52.59 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.41 Total: -20.16 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.38 -6.91 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082126853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.488 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds