Wall clock time and date at job start Fri Apr 10 2020 17:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00403 * 2 1 4 4 H 1.08998 * 110.88442 * 32.42780 * 3 2 1 5 5 C 1.54917 * 111.00398 * 268.54749 * 3 2 1 6 6 N 1.47422 * 104.83074 * 204.87574 * 5 3 2 7 7 C 1.36938 * 125.64571 * 204.09198 * 6 5 3 8 8 H 1.07998 * 120.00058 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99997 * 0.02987 * 7 6 5 10 10 N 1.31620 * 120.00091 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47071 * 89.99686 * 11 9 7 13 13 H 1.48497 * 109.47157 * 209.99349 * 11 9 7 14 14 H 1.48494 * 109.47207 * 329.99972 * 11 9 7 15 15 C 1.47020 * 108.70191 * 24.12901 * 6 5 3 16 16 C 1.54316 * 107.27568 * 358.94070 * 15 6 5 17 17 H 1.09003 * 110.72351 * 96.16743 * 16 15 6 18 18 N 1.46496 * 110.87374 * 219.37532 * 16 15 6 19 19 C 1.34781 * 119.99704 * 268.60454 * 18 16 15 20 20 O 1.21286 * 120.00058 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00099 * 179.97438 * 19 18 16 22 22 H 1.08997 * 109.47099 * 60.00012 * 21 19 18 23 23 C 1.53001 * 109.47400 * 300.00708 * 21 19 18 24 24 C 1.50693 * 109.47343 * 180.02562 * 21 19 18 25 25 C 1.34517 * 125.78946 * 240.00393 * 24 21 19 26 26 C 1.41383 * 106.84221 * 179.97438 * 25 24 21 27 27 C 1.34513 * 106.84202 * 359.97438 * 26 25 24 28 28 O 1.34303 * 125.79484 * 59.69329 * 24 21 19 29 29 H 1.08995 * 109.47537 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46919 * 300.00196 * 1 2 3 31 31 H 1.08999 * 109.47310 * 59.99456 * 1 2 3 32 32 H 1.08998 * 110.36726 * 323.71587 * 5 3 2 33 33 H 1.09005 * 110.36534 * 86.04108 * 5 3 2 34 34 H 0.96998 * 119.99446 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.88493 * 239.51822 * 15 6 5 36 36 H 1.09005 * 110.00581 * 118.43132 * 15 6 5 37 37 H 0.97001 * 120.00701 * 88.60833 * 18 16 15 38 38 H 1.09005 * 109.46656 * 299.99417 * 23 21 19 39 39 H 1.09006 * 109.47264 * 59.99304 * 23 21 19 40 40 H 1.08997 * 109.47359 * 179.97438 * 23 21 19 41 41 H 1.08008 * 126.58028 * 359.95948 * 25 24 21 42 42 H 1.07997 * 126.57856 * 179.97438 * 26 25 24 43 43 H 1.07994 * 125.79063 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5461 5 6 2.2697 1.7977 -1.4458 6 7 3.3606 2.7813 -1.3195 7 6 3.6227 3.7994 -2.1969 8 1 4.4496 4.4698 -2.0147 9 6 2.8254 3.9700 -3.3204 10 7 1.8179 3.1527 -3.5426 11 14 3.1826 5.3593 -4.5168 12 1 4.1233 4.8827 -5.5624 13 1 1.9164 5.8012 -5.1545 14 1 3.7921 6.4985 -3.7848 15 6 4.1210 2.4873 -0.0960 16 6 3.4486 1.2747 0.5813 17 1 3.9556 0.3495 0.3072 18 7 3.4228 1.4378 2.0369 19 6 4.4340 0.9566 2.7869 20 8 5.3655 0.3890 2.2567 21 6 4.4078 1.1248 4.2842 22 1 3.5228 0.6343 4.6895 23 6 4.3681 2.6148 4.6295 24 6 5.6445 0.5041 4.8812 25 6 5.6672 -0.5000 5.7760 26 6 7.0266 -0.7650 6.0599 27 6 7.7534 0.0926 5.3212 28 8 6.9111 0.8557 4.6057 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.5795 0.9669 -2.0796 33 1 1.3760 2.2725 -1.8509 34 1 1.2611 3.2717 -4.3279 35 1 4.0942 3.3475 0.5728 36 1 5.1537 2.2458 -0.3478 37 1 2.6780 1.8920 2.4611 38 1 5.2531 3.1054 4.2242 39 1 3.4737 3.0641 4.1976 40 1 4.3487 2.7365 5.7125 41 1 4.8112 -1.0065 6.1970 42 1 7.4083 -1.5126 6.7394 43 1 8.8314 0.1544 5.3035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082126853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:20 Heat of formation + Delta-G solvation = -56.100855 kcal Electronic energy + Delta-G solvation = -25887.271772 eV Core-core repulsion = 22127.574992 eV Total energy + Delta-G solvation = -3759.696779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.48451 -41.15421 -39.65385 -37.52816 -35.70666 -35.20157 -33.80005 -33.48778 -30.61235 -29.52514 -28.77630 -27.54122 -26.29036 -25.29748 -22.79859 -22.59271 -22.29934 -21.60623 -20.82460 -19.22150 -18.48758 -18.21536 -17.64900 -17.21512 -16.76810 -16.64789 -16.16973 -15.89467 -15.71845 -15.53485 -15.07977 -14.86570 -14.77422 -14.20719 -13.94770 -13.72511 -13.65773 -13.51756 -13.34413 -13.18889 -12.99423 -12.74777 -12.60980 -12.59396 -12.49498 -12.34721 -12.04675 -11.91045 -11.55125 -10.99950 -10.81254 -10.77373 -10.56207 -10.14258 -9.36740 -8.98654 -7.81867 -5.29308 0.81127 1.46821 1.49148 1.54889 1.57915 1.70273 2.08054 2.19076 2.44634 2.73964 3.28964 3.53194 3.56799 3.64874 3.88014 3.97157 3.98910 4.06362 4.15374 4.24247 4.33910 4.36659 4.46578 4.61450 4.67360 4.75988 4.80577 4.82587 4.89757 4.90467 4.97455 5.04289 5.17182 5.27804 5.29263 5.42094 5.43497 5.66488 5.67274 6.17865 6.28436 6.30872 6.48767 7.03520 7.19480 7.67940 8.30396 9.19521 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.003430 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.497220 B = 8161.701249 C = 9136.399660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.079 3.921 4 H 0.094 0.906 5 C 0.144 3.856 6 N -0.618 5.618 7 C -0.245 4.245 8 H 0.082 0.918 9 C -0.061 4.061 10 N -0.947 5.947 11 Si 0.984 3.016 12 H -0.290 1.290 13 H -0.288 1.288 14 H -0.267 1.267 15 C 0.132 3.868 16 C 0.154 3.846 17 H 0.075 0.925 18 N -0.697 5.697 19 C 0.513 3.487 20 O -0.578 6.578 21 C -0.020 4.020 22 H 0.162 0.838 23 C -0.141 4.141 24 C -0.014 4.014 25 C -0.212 4.212 26 C -0.225 4.225 27 C -0.053 4.053 28 O -0.191 6.191 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.033 0.967 32 H -0.014 1.014 33 H 0.089 0.911 34 H 0.250 0.750 35 H 0.045 0.955 36 H 0.011 0.989 37 H 0.418 0.582 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.170 0.830 42 H 0.171 0.829 43 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 -4.432 22.022 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C 0.019 3.981 4 H 0.111 0.889 5 C 0.018 3.982 6 N -0.346 5.346 7 C -0.373 4.373 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.596 5.596 11 Si 0.812 3.188 12 H -0.217 1.217 13 H -0.215 1.215 14 H -0.192 1.192 15 C 0.005 3.995 16 C 0.048 3.952 17 H 0.093 0.907 18 N -0.350 5.350 19 C 0.300 3.700 20 O -0.456 6.456 21 C -0.041 4.041 22 H 0.180 0.820 23 C -0.199 4.199 24 C -0.064 4.064 25 C -0.231 4.231 26 C -0.244 4.244 27 C -0.120 4.120 28 O -0.087 6.087 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.004 0.996 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.256 0.744 38 H 0.064 0.936 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.188 0.812 42 H 0.189 0.811 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.692 -4.687 21.276 21.797 hybrid contribution 0.036 0.584 -1.051 1.204 sum 0.728 -4.102 20.224 20.649 Atomic orbital electron populations 1.22974 0.79229 1.03875 1.00801 1.87839 1.21809 1.26864 1.95009 1.23611 0.92720 0.84833 0.96945 0.88868 1.22107 0.93828 0.90186 0.92076 1.44547 1.32806 1.32861 1.24358 1.19456 1.11396 1.04859 1.01607 0.90011 1.25652 0.97959 1.01769 0.99999 1.69989 1.20620 1.40029 1.28947 0.84999 0.76715 0.78626 0.78476 1.21718 1.21453 1.19212 1.21654 0.93975 0.95372 0.88468 1.21576 0.95712 0.97748 0.80198 0.90653 1.45688 1.24508 1.59217 1.05548 1.21160 0.81369 0.77150 0.90274 1.90732 1.35908 1.43853 1.75150 1.20034 0.94551 1.00519 0.88966 0.82032 1.21845 1.03523 0.90217 1.04288 1.22014 0.83852 1.00062 1.00490 1.21932 0.99165 0.99572 1.02403 1.22159 0.93129 1.03818 1.05303 1.24742 0.97292 0.94415 0.95541 1.84027 1.16436 1.52812 1.55416 0.87897 0.91790 0.94793 0.99643 0.89322 0.94004 0.93694 0.97125 0.74404 0.93586 0.88914 0.88727 0.81210 0.81148 0.75636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.89 113.37 1.23 1.95 16 2 O -0.40 -14.07 10.52 -148.98 -1.57 -15.64 16 3 C 0.08 2.95 3.11 31.99 0.10 3.05 16 4 H 0.09 3.02 7.77 -2.39 -0.02 3.00 16 5 C 0.14 7.22 5.62 86.86 0.49 7.70 16 6 N -0.62 -32.57 3.39 -691.99 -2.35 -34.92 16 7 C -0.24 -13.85 10.27 84.03 0.86 -12.98 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 10 N -0.95 -55.63 10.09 21.65 0.22 -55.42 16 11 Si 0.98 45.34 29.55 68.60 2.03 47.36 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 15 C 0.13 5.86 7.00 86.73 0.61 6.47 16 16 C 0.15 5.84 3.05 46.18 0.14 5.98 16 17 H 0.08 3.32 7.55 -2.39 -0.02 3.30 16 18 N -0.70 -19.40 5.01 -436.92 -2.19 -21.58 16 19 C 0.51 15.29 7.15 87.66 0.63 15.92 16 20 O -0.58 -23.63 15.44 3.88 0.06 -23.57 16 21 C -0.02 -0.40 3.13 -12.29 -0.04 -0.44 16 22 H 0.16 1.94 8.10 -2.39 -0.02 1.92 16 23 C -0.14 -2.19 9.07 71.98 0.65 -1.54 16 24 C -0.01 -0.34 5.21 24.83 0.13 -0.21 16 25 C -0.21 -4.42 10.78 22.19 0.24 -4.18 16 26 C -0.23 -4.43 10.91 22.19 0.24 -4.19 16 27 C -0.05 -1.14 12.09 66.97 0.81 -0.33 16 28 O -0.19 -5.46 10.33 4.44 0.05 -5.41 16 29 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H 0.09 4.87 5.88 -2.38 -0.01 4.85 16 34 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 35 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 36 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.42 8.18 7.98 -92.71 -0.74 7.44 16 38 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.09 1.05 7.57 -2.38 -0.02 1.03 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.23 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -78.83 359.56 3.08 -75.75 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.27 Total: 19.19 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 6.56 Total: 14.24 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.32 Total: -111.92 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.46 Total: -44.62 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -78.83 3.08 -75.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082126853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.649 kcal (2) G-P(sol) polarization free energy of solvation -78.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds